Cp4.1LG12g11270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g11270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	glycine-rich protein 5-like
Location	Cp4.1LG12: 8884826 .. 8887122 (-)
RNA-Seq Expression	Cp4.1LG12g11270
Synteny	Cp4.1LG12g11270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAAGAAGAAGAAGAAGTCAAAGAAGAAAATGGCCAAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACTTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATCGGCGGTGCAGTCGGATCGGGTGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAGATGGCGGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGAAGTTGTTCAATCTCGTTTGATTTCTACTTAACATGTTATTGGTCGTTTGAAGTTTAATTACGTTGTTGTAGGTTATGAGTCGTTAATGTTTTCCTTCTAGGCTTTATCAAATTTTCATTAAACTAGTTTGCTTTATGTTGTTAAATTATTTCATTAACTTTATGTCGTTTTTGGTTGATTGATCGAGTTTGGTTGATGCGTTGATGTAGACTCTTGCCTTTATCTAGATAAGTTAATTGAAGATATTCTAACCGTCCCTACCTCATGATATTGCATATCATATGCATTTAGGACACGAGAGCTAGTCAACTCCTTCTTCAACCTCGTTGCCCGTGTATCGTTTACTTTTGACAAGATGGGTTTCGTCCTCCCGTGTCCATGTTTCCACGATGTTCAACTATCTCTAAAACATTTTCAGTTACAAAAGAAACAACGATAATTTTGTAAATATTCAGTCGAAAAATGAAAAGAAACACCTAATGCGTACAATGATTTTTCAACGACCATGGACGGTGACTCTACGACGGAGAATACTCTAAATGGAAATCACAAATCGATAGCTCAACTTTGTCAGATATGGAACGAAAATCCCTTTAAACAAAATTTAGAAGGGAGAAATTCATGGTATATAAAAGAAGACAATTATCTTTATGGGTACCCGATATTTTACGTGATTATATATAAAAATAAATAAATTGAGAAACTAATATCTAAGTGAACAATATTACGCCATCGTGCCAGATATGATATGGAAAATTGAGTAAAATCTTTTTGAAAAAAATAATTACCACTTTTTTACTAGCAATTGACTATAAATAATAATATAGGACAATTACACCATACAAACATGAAAGTTATTGGTCATAACTTCAGGTCGACCATTATTTAAACGCAAAATAATAATAATAAAAAAGGTCGACCATTATTTGTGACTTTAAATTATTTTCCAATTGTTTCGTGTCGATATTCATCTACTCAATTATGGTAATGGTATCAGAGCCAAACACTTGGAGGTGTGTCAATGAAGACACTGAGTCTCGAAGGGAGGTGGACACCAGGTAGTGTGCTAGCAAGGACATTGAGCCCCGAACGAAGGTGGATTGTGAGATCTCACATCGATTGGAGAAACCTAATGCAAATGGAAGCACAAAAAAGACTGATGGTGGACTTGAGCTGTTACAGTTTAATAGCTCGTCTATAACTTATATATGGTTATTGAAATTAAAACCCTAATGCAAATGGACAGATACCATAAGAAGGGTATGTGTGTGAAAAGTTCTTATTTTGGTGAAGACTTGGTGCAGTGGGCTATAGCAATTGCAGAAATTACCACTTTAATTACCCCATTTGGTAATTTCATACGGCCTGGCTCTGCCTTCGCATTTAAACTCATTTACTTTCTTCAACTGTTTCTCAACGCTCTGTGCCCTTTAAAACCCTAAGCTCACAGTGCCATTGGCCAACAACTCACACACAAACACAAGTGTAAGTGTTGGATTAGAGAAGAAGAAAATGGGCAAATTGTTTATGGCTTTGCTTTTGGCACTTGTGGCCACTCACGCCGTAGCTAGACCTGCGCCAACCCACGCCACTTTCAATGACCAAAAGAATCTCCTTGGTGGGGTTGGTGGCATCTCCGGCCTCCCGTTCGGTGGATTGGGTGGTGGTCTTGGTTTTCCTGGTGGAATTGGTGGTCTCGGTGGCCCTGGTGGTATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCTTTCCTGGTGGCATTGGTGGTCTTGGCGGGCTCGGTGGCCCCGGTGGGATTGGTGGTCTCGGTGGCCCTGGTGGAATTGGTGGAGTAGGTGGAGTTGGAGGACTGGGAGGCACTGGCGGTGGCTTGGGTGGAGGTGGCAGCGGAGGCACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTACCCT

mRNA sequence

AACAAAAGAAGAAGAAGAAGTCAAAGAAGAAAATGGCCAAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACTTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATCGGCGGTGCAGTCGGATCGGGTGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAGATGGCGGTGGTCTCGGTGGTGGCTCTGGTGGAGTTGGAGGACTGGGAGGCACTGGCGGTGGCTTGGGTGGAGGTGGCAGCGGAGGCACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTACCCT

Coding sequence (CDS)

ATGGCCAAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACCCCACCCGACGCCACTTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCCGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATCGGCGGTGCAGTCGGATCGGGTGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGCTGGGAGGCACCGGCGGTGGCATTGGAGGCGGAGATGGCGGTGGTCTCGGTGGTGGCTCTGGTGGAGTTGGAGGACTGGGAGGCACTGGCGGTGGCTTGGGTGGAGGTGGCAGCGGAGGCACCGGTGGTGTTGGTGGCGGTTCTGGTGGCCCTTACCCT

Protein sequence

MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGTGGGLGGGGSGGTGGVGGGSGGPYP

Homology

[Close]

BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: XP_023549421.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162 bits (410), Expect = 6.41e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSG 103
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSG
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSG 103

[Close]

BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: KAG6575963.1 (hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (392), Expect = 3.53e-46
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKLLMALFLALM THALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSG 103
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGG G GLGGGSG
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSG 103

[Close]

BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: KAG7014487.1 (hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (400), Expect = 4.24e-46
Identity = 132/204 (64.71%), Postives = 132/204 (64.71%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKLLMALFLALM THALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGS------------------ 120
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGG G GLGGGS                  
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSEKKKMGKLFMALLLALVA 120

Query: 121 ---------------------------------------------------GGVGGLGGT 135
                                                              GGVGGLGGT
Sbjct: 121 THAVARPAPTHATFNDQKNLLGGVGAISGLPFGGLGGGLGFPGGIGGLGGPGGVGGLGGT 180

[Close]

BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: XP_022953896.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 149 bits (377), Expect = 5.81e-44
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 65
           MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60

Query: 66  LGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSG 103
           LGGGLGGPAGGIGGLGGLGGTGGGIGGG G GLGGGSG
Sbjct: 61  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSG 98

[Close]

BLAST of Cp4.1LG12g11270 vs. NCBI nr
Match: KAA0050560.1 (acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 3.37e-30
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
          MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+
Sbjct: 1  MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61 GSGG---DLGGGLGGPAGGIGGLGGLGGTGGGIGG 92
          G GG    LGGGLGG  G  GGLGGLGGTGGG+GG
Sbjct: 61 GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGG 95

[Close]

BLAST of Cp4.1LG12g11270 vs. ExPASy TrEMBL
Match: A0A6J1GPC7 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.82e-44
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 65
           MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60

Query: 66  LGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSG 103
           LGGGLGGPAGGIGGLGGLGGTGGGIGGG G GLGGGSG
Sbjct: 61  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSG 98

[Close]

BLAST of Cp4.1LG12g11270 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 1.63e-30
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
          MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+
Sbjct: 1  MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61 GSGG---DLGGGLGGPAGGIGGLGGLGGTGGGIGG 92
          G GG    LGGGLGG  G  GGLGGLGGTGGG+GG
Sbjct: 61 GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGG 95

[Close]

BLAST of Cp4.1LG12g11270 vs. ExPASy TrEMBL
Match: A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 8.48e-29
Identity = 85/111 (76.58%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MAKL MA+ LAL+ATHALARPTP DATF DQKNFLTYGG+G YSGIGSNGLPFGG+GGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGGVGGLGGT 111
           G  G      GG  GGIGGLGG GG G G+GGG GGGLGGG GG GGLGGT
Sbjct: 61  GGTGP-----GGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGG-GGLGGT 105

[Close]

BLAST of Cp4.1LG12g11270 vs. ExPASy TrEMBL
Match: A0A1S3CGR1 (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 2.64e-28
Identity = 71/90 (78.89%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 6  MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGG- 65
          MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+G GG 
Sbjct: 1  MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66 --DLGGGLGGPAGGIGGLGGLGGTGGGIGG 92
             LGGGLGG  G  GGLGGLGGTGGG+GG
Sbjct: 61 GGGLGGGLGGATGIGGGLGGLGGTGGGLGG 90

[Close]

BLAST of Cp4.1LG12g11270 vs. ExPASy TrEMBL
Match: A0A0A0K9U1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 6.12e-28
Identity = 73/99 (73.74%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1  MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
          MAKL MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIG+NGLPFGG+GGA+
Sbjct: 1  MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61 GSGG-------DLGGGLGGPAGGIGGLGGLGGTGGGIGG 92
          G GG        LGGGLGG  G  GGLGGLGG GGG GG
Sbjct: 61 GGGGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGG 99

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g11270 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g11270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549421.1	6.41e-49	100.00	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575963.1	3.53e-46	97.09	hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014487.1	4.24e-46	64.71	hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022953896.1	5.81e-44	97.96	glycine-rich protein 5-like [Cucurbita moschata]	[more]
KAA0050560.1	3.37e-30	78.95	acanthoscurrin-1-like [Cucumis melo var. makuwa] >TYK18800.1 acanthoscurrin-1-li...	[more]

BLAST of Cp4.1LG12g11270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPC7	2.82e-44	97.96	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 S...	[more]
A0A5A7U5T7	1.63e-30	78.95	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]
A0A6J1KVV3	8.48e-29	76.58	acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1	[more]
A0A1S3CGR1	2.64e-28	78.89	acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1	[more]
A0A0A0K9U1	6.12e-28	73.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g11270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..135
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..104
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g11270.1	Cp4.1LG12g11270.1	mRNA