Cp4.1LG12g11180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g11180
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	thioredoxin-like protein 4B
Location	Cp4.1LG12: 8916050 .. 8917179 (-)
RNA-Seq Expression	Cp4.1LG12g11180
Synteny	Cp4.1LG12g11180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTGCCTCCCCCAACGTGACTGAACCAGAGAATCCCCGCCTTCAGCCGCGATCGCGCGTCCTTCCTCCGCAAATACTTGATTAATCAACCCAATAGCCACCGCCCAATCGGATTTTATCCTCTTCGCTGCCTTTAATCCCTCAACCATGCCTGTTATTTCGAACAATTTGATGCTCCAGCTACTTTGAACGCTACATTACCCACCTGTTTCAATTCGTCTTTCCCGATAGCTGCATCTCCCGGTGCTACATTCTTCCTCTCATCGCGCATTAAGTCTCCTCATTGTCTCTTGATTAAGCTTTGTTTGTTCCTTGAATTAATTTCTAGTATCTGGGTATTGTTGCTATTTACCTTTCCTGATTGCCCTTAATCTTAATTTTTCTCTCTCGTTCCAATTTTTTGGTTGATAATCTATGGCGTTAGTATGTTTTAAATTTTGTAGGTTTTAATTGCTGTAATCCGTGTAATCGTATGTTAAATGCACGTCTTTCTCTGTTTCTTGTTATCTACCGTATTCTGCTATAACTTATGATTTTGGGGTGTTTTTGTTTTGTTTTTAGTTTTTGCAAGCTAGTTTATGGTCTGTGGAACATGTAAAGATATGAAGAGTTGCATTATATATGTGTGAATAGTTAAAAAAAAGTTTAATTAGACAACCCTAGGGTGTGTATGAAGCTTGTTTTGTTTCTTTAACTAAATTCGTTTAGGCGGATTGCAGGAGAAGGAGGATGAGCTATCTTTTAAGGACCTTAACAACGAAGAGAGAAGTGGATTCCATCATTAGGGACACTATTGATAAGGTTCTCATTCTCCGATTTGGGCGGTGCTCCGATTCAGTTTGTCTCCTCCTTGACGATATTGTGTGTTACCAATTCCCTGAATTCTGTTTTCATCTTCCATGATTGATATGCTTTTTCAGAATTTATGATTTTGTTTTCCTTATGTTTCACTCTTTTGATGATTTAGCTTGCAAAGTGCGCTCGAGAAGTGTCGAAGTTTTCTTTGATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACATCAAGTACTTTGACATAACTCTTATACCGTCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGTGA

mRNA sequence

TTATTGCCTCCCCCAACGTGACTGAACCAGAGAATCCCCGCCTTCAGCCGCGATCGCGCGTCCTTCCTCCGCAAATACTTGATTAATCAACCCAATAGCCACCGCCCAATCGGATTTTATCCTCTTCGCTGCCTTTAATCCCTCAACCATGCCTGTTATTTCGAACAATTTGATGCTCCAGCTACTTTGAACGCTACATTACCCACCTGTTTCAATTCGTCTTTCCCGATAGCTGCATCTCCCGGAGAAGGAGGATGAGCTATCTTTTAAGGACCTTAACAACGAAGAGAGAAGTGGATTCCATCATTAGGGACACTATTGATAAGGTTCTCATTCTCCGATTTGGGCGGTGCTCCGATTCAGTTTGTCTCCTCCTTGACGATATTCTTGCAAAGTGCGCTCGAGAAGTGTCGAAGTTTTCTTTGATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACATCAAGTACTTTGACATAACTCTTATACCGTCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGTGA

Coding sequence (CDS)

ATGAGCTATCTTTTAAGGACCTTAACAACGAAGAGAGAAGTGGATTCCATCATTAGGGACACTATTGATAAGGTTCTCATTCTCCGATTTGGGCGGTGCTCCGATTCAGTTTGTCTCCTCCTTGACGATATTCTTGCAAAGTGCGCTCGAGAAGTGTCGAAGTTTTCTTTGATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACATCAAGTACTTTGACATAACTCTTATACCGTCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGTGA

Protein sequence

MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG

Homology

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy Swiss-Prot
Match: Q9NX01 (Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MS+LL  LT+K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK + I L
Sbjct: 1  MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 98
          VD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G
Sbjct: 61 VDVD--QTAVYTQYFDISYIPSTVFFFNGQHMKVDYG 95

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy Swiss-Prot
Match: Q8BUH1 (Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-23
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MS+LL  LT+K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK + I L
Sbjct: 1  MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 98
          VD+D     VY +YFDI+ IPSTVFFFN  HMK+D G
Sbjct: 61 VDVD--HTPVYTQYFDISYIPSTVFFFNGQHMKVDYG 95

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy Swiss-Prot
Match: Q06819 (Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DIB1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-07
Identity = 32/96 (33.33%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 2  SYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIALV 61
          S LL  L T   VD  I     +++++RFGR +D  C+++D++L+  A  V  F++I L 
Sbjct: 3  SVLLPQLRTGWHVDQAIVTETKRLVVIRFGRKNDRQCMIMDELLSSIAERVRNFAVIYLC 62

Query: 62 DIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 98
          DID  E+  + + +++T   + +FF++  HM  D G
Sbjct: 63 DID--EVSDFDEMYELTDPMTVMFFYHNKHMMCDFG 96

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy Swiss-Prot
Match: P83876 (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-07
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  F++I L
Sbjct: 1  MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 98
          VDI   E+  + K +++    + +FFF   H+ +D G
Sbjct: 61 VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLG 95

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy Swiss-Prot
Match: P83877 (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-07
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  F++I L
Sbjct: 1  MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 98
          VDI   E+  + K +++    + +FFF   H+ +D G
Sbjct: 61 VDI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLG 95

[Close]

BLAST of Cp4.1LG12g11180 vs. NCBI nr
Match: XP_023548641.1 (thioredoxin-like protein 4B [Cucurbita pepo subsp. pepo] >XP_023548642.1 thioredoxin-like protein 4B [Cucurbita pepo subsp. pepo] >XP_023548643.1 thioredoxin-like protein 4B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183 bits (464), Expect = 3.34e-57
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL
Sbjct: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. NCBI nr
Match: KAG6575968.1 (Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014491.1 Thioredoxin-like protein 4B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179 bits (455), Expect = 7.85e-56
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. NCBI nr
Match: XP_022953679.1 (thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-like protein 4B [Cucurbita moschata])

HSP 1 Score: 179 bits (455), Expect = 7.85e-56
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. NCBI nr
Match: XP_022991475.1 (thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like protein 4B [Cucurbita maxima])

HSP 1 Score: 179 bits (453), Expect = 1.58e-55
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEE+QVYIKYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEELQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. NCBI nr
Match: XP_022152114.1 (thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-like protein 4B [Momordica charantia])

HSP 1 Score: 176 bits (445), Expect = 2.62e-54
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy TrEMBL
Match: A0A6J1GQC5 (thioredoxin-like protein 4B OS=Cucurbita moschata OX=3662 GN=LOC111456136 PE=3 SV=1)

HSP 1 Score: 179 bits (455), Expect = 3.80e-56
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy TrEMBL
Match: A0A6J1JT18 (thioredoxin-like protein 4B OS=Cucurbita maxima OX=3661 GN=LOC111488081 PE=3 SV=1)

HSP 1 Score: 179 bits (453), Expect = 7.66e-56
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEE+QVYIKYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEELQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy TrEMBL
Match: A0A6J1DGN8 (thioredoxin-like protein 4B OS=Momordica charantia OX=3673 GN=LOC111019903 PE=3 SV=1)

HSP 1 Score: 176 bits (445), Expect = 1.27e-54
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEEIQVYIKYFDISLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy TrEMBL
Match: A0A1S3BH38 (thioredoxin-like protein 4B OS=Cucumis melo OX=3656 GN=LOC103489754 PE=3 SV=1)

HSP 1 Score: 172 bits (436), Expect = 2.97e-53
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IAL
Sbjct: 1  MSYLLRTLTKKGEVDSLIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEEMQVYVKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. ExPASy TrEMBL
Match: A0A1R3HWL9 (mRNA splicing factor, thioredoxin-like U5 snRNP OS=Corchorus capsularis OX=210143 GN=CCACVL1_16490 PE=3 SV=1)

HSP 1 Score: 161 bits (408), Expect = 5.45e-49
Identity = 83/97 (85.57%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLL+TLT KREVD+IIRDTIDKVL+LRFGR SD+VCL LDDILAK AREVSKF+ +AL
Sbjct: 1  MSYLLQTLTKKREVDTIIRDTIDKVLVLRFGRASDAVCLQLDDILAKTAREVSKFATVAL 60

Query: 61 VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 97
          VDIDSE++QVY+KYFDITLIPSTVFFFNAHHMKMDSG
Sbjct: 61 VDIDSEDVQVYVKYFDITLIPSTVFFFNAHHMKMDSG 97

[Close]

BLAST of Cp4.1LG12g11180 vs. TAIR 10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-37
Identity = 72/97 (74.23%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1   MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
           MSYLL+TLTTK E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKF+ +AL
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSG 98
           VD+DSE++QVY+KYFDITL PST+FFFNAHHMK+DSG
Sbjct: 69  VDVDSEDVQVYVKYFDITLFPSTIFFFNAHHMKLDSG 105

[Close]

BLAST of Cp4.1LG12g11180 vs. TAIR 10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFSLIAL 60
          MSYLL  L +   VD  I    ++++++RFG   D  C+ +D++LA  A  +  F++I L
Sbjct: 1  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61 VDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSG 98
          VDI +  +     + +D    PSTV FFF   H+ +D G
Sbjct: 61 VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLG 95

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g11180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NX01	2.3e-23	58.76	Thioredoxin-like protein 4B OS=Homo sapiens OX=9606 GN=TXNL4B PE=1 SV=1	[more]
Q8BUH1	4.0e-23	58.76	Thioredoxin-like protein 4B OS=Mus musculus OX=10090 GN=Txnl4b PE=2 SV=2	[more]
Q06819	2.3e-07	33.33	Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...	[more]
P83876	4.0e-07	34.02	Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1	[more]
P83877	4.0e-07	34.02	Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1	[more]

BLAST of Cp4.1LG12g11180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548641.1	3.34e-57	100.00	thioredoxin-like protein 4B [Cucurbita pepo subsp. pepo] >XP_023548642.1 thiored...	[more]
KAG6575968.1	7.85e-56	97.94	Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_022953679.1	7.85e-56	97.94	thioredoxin-like protein 4B [Cucurbita moschata] >XP_022953680.1 thioredoxin-lik...	[more]
XP_022991475.1	1.58e-55	96.91	thioredoxin-like protein 4B [Cucurbita maxima] >XP_022991476.1 thioredoxin-like ...	[more]
XP_022152114.1	2.62e-54	95.88	thioredoxin-like protein 4B [Momordica charantia] >XP_022152121.1 thioredoxin-li...	[more]

BLAST of Cp4.1LG12g11180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQC5	3.80e-56	97.94	thioredoxin-like protein 4B OS=Cucurbita moschata OX=3662 GN=LOC111456136 PE=3 S...	[more]
A0A6J1JT18	7.66e-56	96.91	thioredoxin-like protein 4B OS=Cucurbita maxima OX=3661 GN=LOC111488081 PE=3 SV=...	[more]
A0A6J1DGN8	1.27e-54	95.88	thioredoxin-like protein 4B OS=Momordica charantia OX=3673 GN=LOC111019903 PE=3 ...	[more]
A0A1S3BH38	2.97e-53	92.78	thioredoxin-like protein 4B OS=Cucumis melo OX=3656 GN=LOC103489754 PE=3 SV=1	[more]
A0A1R3HWL9	5.45e-49	85.57	mRNA splicing factor, thioredoxin-like U5 snRNP OS=Corchorus capsularis OX=21014...	[more]

BLAST of Cp4.1LG12g11180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24730.1	1.3e-37	74.23	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]
AT5G08290.1	1.8e-07	35.35	mRNA splicing factor, thioredoxin-like U5 snRNP	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004123	Dim1 family	SMART	SM01410	DIM1_2	coord: 4..97 e-value: 4.7E-26 score: 102.6
IPR004123	Dim1 family	PFAM	PF02966	DIM1	coord: 4..97 e-value: 2.8E-28 score: 98.3
IPR004123	Dim1 family	PANTHER	PTHR12052	THIOREDOXIN-LIKE PROTEN 4A, 4B	coord: 1..97
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..97 e-value: 6.6E-29 score: 102.2
None	No IPR available	PANTHER	PTHR12052:SF4	THIOREDOXIN-LIKE PROTEIN 4B	coord: 1..97
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 5..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g11180.1	Cp4.1LG12g11180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP