Cp4.1LG12g10620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g10620
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	vacuolar protein sorting-associated protein 2 homolog 3-like
Location	Cp4.1LG12: 9268501 .. 9270445 (-)
RNA-Seq Expression	Cp4.1LG12g10620
Synteny	Cp4.1LG12g10620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATCTTTTCGAAGAAACCTACCGCCAAAGGTCGTCACCAATTGCTGCCGTTTGTTTTTCTTAATCGATTTCGTTCATTTGATGATTCTTTTTTCTAAATTTGTAGCGGAAACTTGTTCATCTGTTTCTGCATTGCTCTCAGTTCCTCCTTTTTGCTTTGATATTTTTGTTCTGGGTTGCTTTGATTCGGTTGTTCTTTATGTGATTAAACTTGTTTCGATTACAGAAGCTCTTCGGGAGAGTAAAAGGGAAATGACGCGCTCTACGAGAGGTATCTTATTGATGTTTCTTAAGTGCACTTAATTAGTAAGGGATTCATCTGGTTTCAAAGTCATGATTGCGCTTATGTCTCGAGTAATTAAATTTATTCATGTTTCTCATCATATTTGTGTATATTGCAACTCGTCCATATGCTCATGATGATGTTTATTTTGGACTGAATGGAGCAAAGAAGCATGTAATTTATGATTGCATATGGTACTAGCGAGAACCACTTACCCCCAACCGGTTTCCTCACAGAGAAAAGGAGATGAAAATTTGGGCTTGAACTTAGAGTTTGCTTGTGAGATCCCACGTTGGTTAGGGAGGAGAATGAAACATTCTTTACAAGGGTGTGGAAACCTCTCCAAGCAGACGCGTTTTAAAAATCTTGAGGGGAAGCTTGAAAGGGAAAGCCCAAAAAGGACAGTATTTGCTGGCGGTGGGCTTGGACTGTTACAAATGGTATAAGAGCTAGACATCGGGCTATGTGCCAGCGAGGAGGTTGAGCCCTGAAGGGGGGTGGAGTGTGAGATCCCACATCGGTTGAGAGGAGAACAAAGCATTCTTTATAAGAGTGTAGAAACCTCTCCCTAACAGACATGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAGGATAATATCTATAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGTCAGACACCGGGCAATGTGCTACGAGGAGACTAAGCCCCGAAGGTGGGTGGATTGTGATATCCCACATCAGTTGGGGAGGAGAATGAAGCATTCTTTATAAGAGTGTGAAAACCTCTCCCTAGCAGATGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATCGGATAGCGGTGAATTTGGGTTCTTACACTCAATATGCCATACCAATAATGCTATGGCTTCAATATGCCATACCAATAATGGTATGGCTTTGAGTTGGGATAAGATGGTACTAATGTTTTGGGATTACATTTTGCAATTGTTTTCAGAATAGAATGATATTCTGTGGTTATGTTTCTCGACACTTCTTGAAGTTAAGAATGCCATTTCCTTACCTTGAATTGATATTCCTTTGCACGTAACTACGTTGTTTAATTCCTTATACTATTTTTTGTAAAGTGTCACTTCCTTAGATGTTTTTGTTTCATTTTCATACTATAATAATTGTTCTTTTCTCTTTTCTTTGTGATATCACTGAGTGGTCTCATCTTTTTGCCACTTTTTCTCAGGTATAGAGAAGGAAATTGGGGCATTGCAATTAGAAGTACGTGAAGAGCTTCTAAACATGGGTTTAATCTAAATATTCTGTGTTTTAACTGTGATTTGGTTTATAATCTTATCAGGAAAAGAAGCTGGTCGCTGAGATAAAGAGAACTGCCAAAACAGGAAACGAGGTACATTTCATATTCTCGACCAGATTGTATCGGTCCTAGTCCTACGGAGGGTTGATTCTTTTTGAAAAATTCTTCTTCTGGGGTCGAGCATTAATTATGTTTATCATCATCCATTCGATTCTTCAGGCAGCGACGAAGATTCTTGCTCGGCAGTTAGTTAGGCTCAGGCAACAAATAGCAAAATTACAAGGTAGTCGAGCTCAAATGAGAGGCATAGCAACTCACACACAGGTTAAGTCAAGTGCCTAA

mRNA sequence

ATGAATATCTTTTCGAAGAAACCTACCGCCAAAGCGGAAACTTGTTCATCTGTTTCTGCATTGCTCTCAGTTCCTCCTTTTTGCTTTGATATTTTTGTTCTGGGTTGCTTTGATTCGGTTGTTCTTTATGTGATTAAACTTGTTTCGATTACAGAAGCTCTTCGGGAGAGTAAAAGGGAAATGACGCGCTCTACGAGAGGTATAGAGAAGGAAATTGGGGCATTGCAATTAGAAGAAAAGAAGCTGGTCGCTGAGATAAAGAGAACTGCCAAAACAGGAAACGAGGCAGCGACGAAGATTCTTGCTCGGCAGTTAGTTAGGCTCAGGCAACAAATAGCAAAATTACAAGGTAGTCGAGCTCAAATGAGAGGCATAGCAACTCACACACAGGTTAAGTCAAGTGCCTAA

Coding sequence (CDS)

ATGAATATCTTTTCGAAGAAACCTACCGCCAAAGCGGAAACTTGTTCATCTGTTTCTGCATTGCTCTCAGTTCCTCCTTTTTGCTTTGATATTTTTGTTCTGGGTTGCTTTGATTCGGTTGTTCTTTATGTGATTAAACTTGTTTCGATTACAGAAGCTCTTCGGGAGAGTAAAAGGGAAATGACGCGCTCTACGAGAGGTATAGAGAAGGAAATTGGGGCATTGCAATTAGAAGAAAAGAAGCTGGTCGCTGAGATAAAGAGAACTGCCAAAACAGGAAACGAGGCAGCGACGAAGATTCTTGCTCGGCAGTTAGTTAGGCTCAGGCAACAAATAGCAAAATTACAAGGTAGTCGAGCTCAAATGAGAGGCATAGCAACTCACACACAGGTTAAGTCAAGTGCCTAA

Protein sequence

MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRAQMRGIATHTQVKSSA

Homology

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy Swiss-Prot
Match: Q941D5 (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRESKREMT++TRGIEKEIG+LQ EEKKLV EIKRTAK+GNE ATKILARQL+RLRQQ
Sbjct: 12  EVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy Swiss-Prot
Match: Q0WTY4 (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=VPS2.2 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 9.1e-26
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           +ALR SKREM  +TRGIE+EI +LQLEEK+LVAEIK+TAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  DALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           I  LQGSRAQ+RG+ THTQ
Sbjct: 72  ITNLQGSRAQIRGVTTHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy Swiss-Prot
Match: Q9SKI2 (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS2.1 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRE+KR + +S R IE+E   LQ +EKKL+ EIK+TAK G   A K++A+ L+R R Q
Sbjct: 14  ELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQ 73

Query: 112 IAKLQGSRAQMRGIATHTQVKSS 135
           I K    ++Q++G++   Q   S
Sbjct: 74  IEKFYKLKSQLQGVSLRIQTLKS 96

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy Swiss-Prot
Match: P36108 (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DID4 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 46  KLVSITEALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQL 105
           K V+  E L++++R + R+ R +E+E   L+L++KKLV+EIK++AK G  AA K+ A+ L
Sbjct: 10  KNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDL 69

Query: 106 VRLRQQIAKLQGSRAQMRGIATHTQ-VKSS 135
           VR R  I K    +AQ++ I+   Q V+SS
Sbjct: 70  VRTRNYIQKFDNMKAQLQAISLRIQAVRSS 99

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy Swiss-Prot
Match: Q66IV6 (Charged multivesicular body protein 2b-B OS=Xenopus laevis OX=8355 GN=chmp2b-b PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-08
Identity = 33/91 (36.26%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 44  VIKLVSITEALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILAR 103
           + K  ++ + +RE  +E+  + R I ++  AL+ +EK+L  EIK+ AKTGN+ A ++LA+
Sbjct: 4   LFKKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAK 63

Query: 104 QLVRLRQQIAKLQGSRAQMRGIATHTQVKSS 135
           QLV+LR+Q  +     +++  ++T T+V SS
Sbjct: 64  QLVQLRKQKTRTYAVSSKVTSMSTQTKVMSS 94

[Close]

BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: XP_022991664.1 (vacuolar protein sorting-associated protein 2 homolog 3-like [Cucurbita maxima])

HSP 1 Score: 142 bits (358), Expect = 1.21e-39
Identity = 90/130 (69.23%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 1   MNIFSKKPTAK----------------------------------------EALRESKRE 60

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA
Sbjct: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 90

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 121 QMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: XP_023549260.1 (vacuolar protein sorting-associated protein 2 homolog 3-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549261.1 vacuolar protein sorting-associated protein 2 homolog 3-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023549262.1 vacuolar protein sorting-associated protein 2 homolog 3-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023549263.1 vacuolar protein sorting-associated protein 2 homolog 3-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (358), Expect = 1.21e-39
Identity = 90/130 (69.23%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 1   MNIFSKKPTAK----------------------------------------EALRESKRE 60

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA
Sbjct: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 90

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 121 QMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: XP_022953389.1 (vacuolar protein sorting-associated protein 2 homolog 3-like [Cucurbita moschata] >KAG7014549.1 Vacuolar protein sorting-associated protein 2-like 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (358), Expect = 5.88e-39
Identity = 90/130 (69.23%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 60  MNIFSKKPTAK----------------------------------------EALRESKRE 119

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA
Sbjct: 120 MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 149

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 180 QMRGIATHTQ 149

[Close]

BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: KAG6576028.1 (Vacuolar protein sorting-associated protein 2-like 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (358), Expect = 5.88e-39
Identity = 90/130 (69.23%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 60  MNIFSKKPTAK----------------------------------------EALRESKRE 119

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA
Sbjct: 120 MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 149

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 180 QMRGIATHTQ 149

[Close]

BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: XP_008447230.1 (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo] >XP_038896097.1 vacuolar protein sorting-associated protein 2 homolog 3 [Benincasa hispida])

HSP 1 Score: 140 bits (353), Expect = 6.89e-39
Identity = 89/130 (68.46%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 1   MNIFSKKPTAK----------------------------------------EALRESKRE 60

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIA LQGSRA
Sbjct: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRA 90

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 121 QMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy TrEMBL
Match: A0A6J1JVH0 (vacuolar protein sorting-associated protein 2 homolog 3-like OS=Cucurbita maxima OX=3661 GN=LOC111488210 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 5.86e-40
Identity = 90/130 (69.23%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 1   MNIFSKKPTAK----------------------------------------EALRESKRE 60

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA
Sbjct: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 90

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 121 QMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy TrEMBL
Match: A0A6J1GPI2 (vacuolar protein sorting-associated protein 2 homolog 3-like OS=Cucurbita moschata OX=3662 GN=LOC111455957 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 2.85e-39
Identity = 90/130 (69.23%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 60  MNIFSKKPTAK----------------------------------------EALRESKRE 119

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA
Sbjct: 120 MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 149

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 180 QMRGIATHTQ 149

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy TrEMBL
Match: A0A0A0K5C0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372290 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 3.34e-39
Identity = 89/130 (68.46%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 1   MNIFSKKPTAK----------------------------------------EALRESKRE 60

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIA LQGSRA
Sbjct: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRA 90

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 121 QMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy TrEMBL
Match: A0A6J1DR44 (vacuolar protein sorting-associated protein 2 homolog 3 OS=Momordica charantia OX=3673 GN=LOC111023067 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 3.34e-39
Identity = 89/130 (68.46%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 1   MNIFSKKPTAK----------------------------------------EALRESKRE 60

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIA LQGSRA
Sbjct: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRA 90

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 121 QMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. ExPASy TrEMBL
Match: A0A1S3BGD8 (vacuolar protein sorting-associated protein 2 homolog 3 OS=Cucumis melo OX=3656 GN=LOC103489723 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 3.34e-39
Identity = 89/130 (68.46%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKRE 60
           MNIFSKKPTAK                                        EALRESKRE
Sbjct: 1   MNIFSKKPTAK----------------------------------------EALRESKRE 60

Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIA LQGSRA
Sbjct: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRA 90

Query: 121 QMRGIATHTQ 130
           QMRGIATHTQ
Sbjct: 121 QMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. TAIR 10
Match: AT1G03950.1 (vacuolar protein sorting-associated protein 2.3 )

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRESKREMT++TRGIEKEIG+LQ EEKKLV EIKRTAK+GNE ATKILARQL+RLRQQ
Sbjct: 12  EVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 117.9 bits (294), Expect = 6.5e-27
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           +ALR SKREM  +TRGIE+EI +LQLEEK+LVAEIK+TAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  DALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           I  LQGSRAQ+RG+ THTQ
Sbjct: 72  ITNLQGSRAQIRGVTTHTQ 90

[Close]

BLAST of Cp4.1LG12g10620 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-23
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 61  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 120
           M  +TRGIE+EI +LQLEEK+LVAEIK+TAKTGNEAATKILARQLVRLRQQI  LQGSRA
Sbjct: 1   MAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRA 60

Query: 121 QMRGIATHTQ 131
           Q+RG+ THTQ
Sbjct: 61  QIRGVTTHTQ 70

[Close]

BLAST of Cp4.1LG12g10620 vs. TAIR 10
Match: AT2G06530.1 (SNF7 family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRE+KR + +S R IE+E   LQ +EKKL+ EIK+TAK G   A K++A+ L+R R Q
Sbjct: 14  ELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQ 73

Query: 112 IAKLQGSRAQMRGIATHTQVKSS 135
           I K    ++Q++G++   Q   S
Sbjct: 74  IEKFYKLKSQLQGVSLRIQTLKS 96

[Close]

BLAST of Cp4.1LG12g10620 vs. TAIR 10
Match: AT5G22950.1 (SNF7 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 4.1e-05
Identity = 25/77 (32.47%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           + LR+ +R++ +  R IE++I  +Q EE+ +   IK  AK  +  + K LA+++V  R+ 
Sbjct: 16  QLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRT 75

Query: 112 IAKLQGSRAQMRGIATH 129
           + +L  ++AQM  I+ H
Sbjct: 76  VNRLYENKAQMNSISMH 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g10620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q941D5	1.5e-28	87.34	Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana ...	[more]
Q0WTY4	9.1e-26	81.01	Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana ...	[more]
Q9SKI2	2.4e-10	44.58	Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana ...	[more]
P36108	1.0e-08	42.22	DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q66IV6	5.0e-08	36.26	Charged multivesicular body protein 2b-B OS=Xenopus laevis OX=8355 GN=chmp2b-b P...	[more]

BLAST of Cp4.1LG12g10620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991664.1	1.21e-39	69.23	vacuolar protein sorting-associated protein 2 homolog 3-like [Cucurbita maxima]	[more]
XP_023549260.1	1.21e-39	69.23	vacuolar protein sorting-associated protein 2 homolog 3-like isoform X1 [Cucurbi...	[more]
XP_022953389.1	5.88e-39	69.23	vacuolar protein sorting-associated protein 2 homolog 3-like [Cucurbita moschata...	[more]
KAG6576028.1	5.88e-39	69.23	Vacuolar protein sorting-associated protein 2-like 3, partial [Cucurbita argyros...	[more]
XP_008447230.1	6.89e-39	68.46	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo...	[more]

BLAST of Cp4.1LG12g10620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVH0	5.86e-40	69.23	vacuolar protein sorting-associated protein 2 homolog 3-like OS=Cucurbita maxima...	[more]
A0A6J1GPI2	2.85e-39	69.23	vacuolar protein sorting-associated protein 2 homolog 3-like OS=Cucurbita moscha...	[more]
A0A0A0K5C0	3.34e-39	68.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372290 PE=4 SV=1	[more]
A0A6J1DR44	3.34e-39	68.46	vacuolar protein sorting-associated protein 2 homolog 3 OS=Momordica charantia O...	[more]
A0A1S3BGD8	3.34e-39	68.46	vacuolar protein sorting-associated protein 2 homolog 3 OS=Cucumis melo OX=3656 ...	[more]

BLAST of Cp4.1LG12g10620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03950.1	1.1e-29	87.34	vacuolar protein sorting-associated protein 2.3	[more]
AT5G44560.1	6.5e-27	81.01	SNF7 family protein	[more]
AT5G44560.2	3.3e-23	81.43	SNF7 family protein	[more]
AT2G06530.1	1.7e-11	44.58	SNF7 family protein	[more]
AT5G22950.1	4.1e-05	32.47	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1230		coord: 47..135 e-value: 9.4E-26 score: 92.7
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 49..133
None	No IPR available	PANTHER	PTHR10476:SF40	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 3	coord: 49..133
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 56..132 e-value: 4.5E-13 score: 49.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g10620.1	Cp4.1LG12g10620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane