Cp4.1LG12g10150 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g10150
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor ERF113-like
Location	Cp4.1LG12: 9710907 .. 9712755 (-)
RNA-Seq Expression	Cp4.1LG12g10150
Synteny	Cp4.1LG12g10150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGTGTCTATATATGCGTTTGATGTTCCACTTGCTTCCCTCTTCCTGGGTTCCTCTGGTGGTGCCATTGTGTGAAAATAAAAAGGAAACAAAATATATGTAACAAAGAGAGCAGTAGAAGTAGAAGTAGAAGTAAAAGAAAGAAAGAAAGAAAGAAAGGTGGATCGGCGGCATGGAAAGCGGGCACTTCCATGGGACGCGGCGGCGGAGGAGAAAGAAACAGATCAACCCTTCCCTCTCTCCGCTACTCTCTCCGCTCCTCTCCCAAATCAAGGTACTTTTTGTTCTTGGTTTCTCATGTGTTTGTTCTTTGTGTTCATCAAATCCTGTTCATTTCCGGTGTGTTCCCATGATTCAATATTAATTCCGTAACTCTCCATCTAACCTAATTGTTATTCTCTTTACGTTTTTGACCATCCACCAAACCCTTTTTTTTTTATTTTTTTTTATTATTATTATATCCATACGCCTTGTTTCATTGTCAAATCTTGAAAATGATGCCTTATTTGGGCATTACCCATGCTTGTTTTATGTTTTTTTATATACTCTCTACTAAACCATTAGAATTCAACATTTTTTTGACGGGTAAAAGTGTGCAATAAAGGTAGGGATTGGTGCATGTTATGCTACACAATTTGGTCACTCACCACTCACCCACTTTTGTTTTTATTATTATGTTCTTTTGTGGTGCATGGGAAGGTTTATGAACTCAAGAACATGGGGGCGCTCTAGGGACACACATCCTTCATCTCATGTGTCTTCATGCTTCTTTTACTTCTTTATTCTATTAAAATACCACAAACATCGACCCTTCCATTTAGTATCATGTTCCAGATGACCACGTTTCTCTAAATTTCTCATATTAATCTTCAATAGATTTACTTTTGATTTCACCCATATATAACATTCCTCCCTCAAAACTCAAAATTTTTTAAAACCCTTATAATCTCTCTTCAATTGATGTGAGGTCTAACAATCCATCCTCGTCAACACTCCTCACCCAAGAATTTTAATTTCTGATAAGCTCAATATAGCATATGGATATAGATTAAAAAATCTATATGTTTGTCGGTCAAGATACAAATTTGAAGTATTTCTATTGTTGGTGTAACGGTTTAAAATTGAGATTCGTAATGTAACGGTTATTGAATAATTTTGTACATACAATGTATTTGTATATAATATATATATATATATATATATATATATATATATATATATATAGAGCGGGGTAGGTCTTGCACATGCAGGCATTTGAATAATATTGGAATGGAGAGATATTGATTATAAATTGATATGATAATACGTGGGAATGTGATGGCAGAAACAGAGAGGAAGATACATTATAGAGGCGTGAGACAAAGACCATGGGGGAAATGGGCGGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACGGCCGAGGCTGCAGCCATTGCGTATGATAACGCCGCTTTGAGGTTTAAAGGGACCAAGGCCAAGCTTAATTTTCCTGAACGAGTTCAAGCCAACCCTGCTGAGTTTGGCTTCCTTCCCTCCACTGGCGGTGCCGCTGCAGCTCCGGCAACCGTAGCATCCTTGTCGTCGTCATCATCATCATCTTCTATTTCTCTTCTCCCGCCGTTGCCGCAGGAAGAAGCCTTCCCCGGCCTTCACCAATACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTATTCTTCCACGCTTCTCAACCAACAACCCCATTACCCTTTCTCTTCCTCACCCAGCCACCCACTCCCACAAGACCACGATCACTACGGCAAAGATTTTGGCGCCGGTGGCTCAACCAATTAG

mRNA sequence

ATGCTCGTAGAAGTAGAAGTAGAAGTAAAAGAAAGAAAGAAAGAAAGAAAGGTGGATCGGCGGCATGGAAAGCGGGCACTTCCATGGGACGCGGCGGCGGAGGAGAAAGAAACAGATCAACCCTTCCCTCTCTCCGCTACTCTCTCCGCTCCTCTCCCAAATCAAGCTCCGGCAACCGTAGCATCCTTGTCGTCGTCATCATCATCATCTTCTATTTCTCTTCTCCCGCCGTTGCCGCAGGAAGAAGCCTTCCCCGGCCTTCACCAATACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTATTCTTCCACGCTTCTCAACCAACAACCCCATTACCCTTTCTCTTCCTCACCCAGCCACCCACTCCCACAAGACCACGATCACTACGGCAAAGATTTTGGCGCCGGTGGCTCAACCAATTAG

Coding sequence (CDS)

ATGCTCGTAGAAGTAGAAGTAGAAGTAAAAGAAAGAAAGAAAGAAAGAAAGGTGGATCGGCGGCATGGAAAGCGGGCACTTCCATGGGACGCGGCGGCGGAGGAGAAAGAAACAGATCAACCCTTCCCTCTCTCCGCTACTCTCTCCGCTCCTCTCCCAAATCAAGCTCCGGCAACCGTAGCATCCTTGTCGTCGTCATCATCATCATCTTCTATTTCTCTTCTCCCGCCGTTGCCGCAGGAAGAAGCCTTCCCCGGCCTTCACCAATACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTATTCTTCCACGCTTCTCAACCAACAACCCCATTACCCTTTCTCTTCCTCACCCAGCCACCCACTCCCACAAGACCACGATCACTACGGCAAAGATTTTGGCGCCGGTGGCTCAACCAATTAG

Protein sequence

MLVEVEVEVKERKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSATLSAPLPNQAPATVASLSSSSSSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPLPQDHDHYGKDFGAGGSTN

Homology

[Close]

BLAST of Cp4.1LG12g10150 vs. NCBI nr
Match: XP_022953884.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita moschata])

HSP 1 Score: 209 bits (532), Expect = 1.34e-65
Identity = 131/222 (59.01%), Postives = 133/222 (59.91%), Query Frame = 0


Query: 7   VEVKERKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSATLSAPLPNQ----------- 66
           VEVKERKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSA LSAPLPNQ           
Sbjct: 12  VEVKERKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSAPLSAPLPNQERKIHYRGVRQ 71

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 72  RPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPAE 131

Query: 127 ------------APATVASLSSSSSSSS--ISLLPPLPQEEAFPGLHQYAQLLSSTDADF 143
                       APATVASLSSSSSSSS  ++LLPPLPQ EAFPGLHQYAQLLSSTDADF
Sbjct: 132 FGFLPSTGGAAAAPATVASLSSSSSSSSSSVALLPPLPQGEAFPGLHQYAQLLSSTDADF 191

[Close]

BLAST of Cp4.1LG12g10150 vs. NCBI nr
Match: XP_022991755.1 (ethylene-responsive transcription factor ERF113-like, partial [Cucurbita maxima])

HSP 1 Score: 192 bits (487), Expect = 1.43e-58
Identity = 120/217 (55.30%), Postives = 125/217 (57.60%), Query Frame = 0


Query: 12  RKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSATLSAPLPNQ---------------- 71
           RK++RKVDRRHGKRALPW+AAAEEKETDQ FPLSATLSAPLPNQ                
Sbjct: 35  RKRKRKVDRRHGKRALPWEAAAEEKETDQSFPLSATLSAPLPNQETERKIHYRGVRQRPW 94

Query: 72  ------------------------------------------------------------ 131
                                                                       
Sbjct: 95  GKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPAEFGF 154

Query: 132 ---------APATVASLSSSSSSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSS 143
                    APATVASLSSSSS   ++LLPPLPQEEAFPGL QYAQLLSSTDADFPYYSS
Sbjct: 155 LPSTGGAAAAPATVASLSSSSS---VALLPPLPQEEAFPGLQQYAQLLSSTDADFPYYSS 214

[Close]

BLAST of Cp4.1LG12g10150 vs. NCBI nr
Match: XP_023548873.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (433), Expect = 2.93e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 56  APATVASLSSSSSSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPHY 115
           APATVASLSSSSSSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPHY
Sbjct: 95  APATVASLSSSSSSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPHY 154

Query: 116 PFSSSPSHPLPQDHDHYGKDFGAGGSTN 143
           PFSSSPSHPLPQDHDHYGKDFGAGGSTN
Sbjct: 155 PFSSSPSHPLPQDHDHYGKDFGAGGSTN 182

[Close]

BLAST of Cp4.1LG12g10150 vs. NCBI nr
Match: KAG6576097.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156 bits (394), Expect = 2.50e-45
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 56  APATVASLSSSSSSSS-ISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPH 115
           APATVASLSSSSSSSS ++L+PPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPH
Sbjct: 95  APATVASLSSSSSSSSSVALVPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPH 154

Query: 116 YPFSSSPSHPLPQDHDHYGKDFGAGGSTN 143
           YPFSSSPSHP  QDHDHYGKDFG GGSTN
Sbjct: 155 YPFSSSPSHPHQQDHDHYGKDFGPGGSTN 183

[Close]

BLAST of Cp4.1LG12g10150 vs. NCBI nr
Match: KAG7014616.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (385), Expect = 4.68e-44
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 56  APATVASLSSSSSSSS-ISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPH 115
           APATVASLSSSSSSSS ++L+P LPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPH
Sbjct: 88  APATVASLSSSSSSSSSVALVPRLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPH 147

Query: 116 YPFSSSPSHPLPQDHDHYGKDFGAGGSTN 143
           YPFSSSPSHP  QDHDHYGKDFG GGSTN
Sbjct: 148 YPFSSSPSHPHQQDHDHYGKDFGPGGSTN 176

[Close]

BLAST of Cp4.1LG12g10150 vs. ExPASy TrEMBL
Match: A0A6J1GR63 (ethylene-responsive transcription factor ERF113-like OS=Cucurbita moschata OX=3662 GN=LOC111456288 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 6.50e-66
Identity = 131/222 (59.01%), Postives = 133/222 (59.91%), Query Frame = 0


Query: 7   VEVKERKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSATLSAPLPNQ----------- 66
           VEVKERKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSA LSAPLPNQ           
Sbjct: 12  VEVKERKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSAPLSAPLPNQERKIHYRGVRQ 71

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 72  RPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPAE 131

Query: 127 ------------APATVASLSSSSSSSS--ISLLPPLPQEEAFPGLHQYAQLLSSTDADF 143
                       APATVASLSSSSSSSS  ++LLPPLPQ EAFPGLHQYAQLLSSTDADF
Sbjct: 132 FGFLPSTGGAAAAPATVASLSSSSSSSSSSVALLPPLPQGEAFPGLHQYAQLLSSTDADF 191

[Close]

BLAST of Cp4.1LG12g10150 vs. ExPASy TrEMBL
Match: A0A6J1JTV1 (ethylene-responsive transcription factor ERF113-like OS=Cucurbita maxima OX=3661 GN=LOC111488287 PE=4 SV=1)

HSP 1 Score: 192 bits (487), Expect = 6.91e-59
Identity = 120/217 (55.30%), Postives = 125/217 (57.60%), Query Frame = 0


Query: 12  RKKERKVDRRHGKRALPWDAAAEEKETDQPFPLSATLSAPLPNQ---------------- 71
           RK++RKVDRRHGKRALPW+AAAEEKETDQ FPLSATLSAPLPNQ                
Sbjct: 35  RKRKRKVDRRHGKRALPWEAAAEEKETDQSFPLSATLSAPLPNQETERKIHYRGVRQRPW 94

Query: 72  ------------------------------------------------------------ 131
                                                                       
Sbjct: 95  GKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPAEFGF 154

Query: 132 ---------APATVASLSSSSSSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSS 143
                    APATVASLSSSSS   ++LLPPLPQEEAFPGL QYAQLLSSTDADFPYYSS
Sbjct: 155 LPSTGGAAAAPATVASLSSSSS---VALLPPLPQEEAFPGLQQYAQLLSSTDADFPYYSS 214

[Close]

BLAST of Cp4.1LG12g10150 vs. ExPASy TrEMBL
Match: A0A6J1KRN4 (ethylene-responsive transcription factor ERF113-like OS=Cucurbita maxima OX=3661 GN=LOC111498070 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 7.18e-24
Identity = 88/227 (38.77%), Postives = 95/227 (41.85%), Query Frame = 0


Query: 14  KERKVDRRHGKRALPWDAAAEEKETDQ--------------------------------- 73
           K RKVDRRHGKR LPW+A AEE+E DQ                                 
Sbjct: 11  KRRKVDRRHGKRPLPWEAPAEEEERDQNELGSSNFSQNQESGSKRHYRGVRQRPWGKWAA 70

Query: 74  -----------------------------------------------PFPL--------S 133
                                                          P P          
Sbjct: 71  EIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGNKAKLNFPERLQPNPPHFAFLPAGG 130

Query: 134 ATLSAPLPNQAPATVASLSSSSSSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYS 143
           A  SAP+   AP  +ASLSS S       LPPL  +EAFPGLHQYAQLLSSTDADFPYYS
Sbjct: 131 AASSAPV---APPALASLSSPSPPP----LPPLSHQEAFPGLHQYAQLLSSTDADFPYYS 190

[Close]

BLAST of Cp4.1LG12g10150 vs. ExPASy TrEMBL
Match: A0A0A0K9G5 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091830 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.58e-22
Identity = 55/80 (68.75%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 68  SSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLL--NQQPHYPF---SSSPS 127
           SS S+SL PPL  EEAFPGLHQYAQLLSS+DADFPYYSS+LL   QQ HYPF   SSS S
Sbjct: 111 SSPSVSLPPPLSHEEAFPGLHQYAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSS 170

Query: 128 HPLPQDHDHYGKDFGAGGST 142
               +D D YG+DFG GGS 
Sbjct: 171 QQQQEDQDRYGEDFGTGGSN 190

[Close]

BLAST of Cp4.1LG12g10150 vs. ExPASy TrEMBL
Match: A0A5D3DLW8 (Ethylene-responsive transcription factor ERF113-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001920 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.01e-21
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 68  SSSSISLLPPLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLL--NQQPHYPF---SSSPS 127
           SS S+SL PPL  EE FPGLHQYAQLLSS+DADFPYYSS+LL   QQ HYPF   SSS S
Sbjct: 97  SSPSVSLPPPLSHEEVFPGLHQYAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSS 156

Query: 128 HPLPQDHDHYGKDFGAGGST 142
               +D D YG+DFG GGS 
Sbjct: 157 QQQQEDQDRYGEDFGTGGSN 176

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g10150 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g10150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953884.1	1.34e-65	59.01	ethylene-responsive transcription factor ERF113-like [Cucurbita moschata]	[more]
XP_022991755.1	1.43e-58	55.30	ethylene-responsive transcription factor ERF113-like, partial [Cucurbita maxima]	[more]
XP_023548873.1	2.93e-51	100.00	ethylene-responsive transcription factor ERF113-like [Cucurbita pepo subsp. pepo...	[more]
KAG6576097.1	2.50e-45	92.13	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
KAG7014616.1	4.68e-44	91.01	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Cp4.1LG12g10150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GR63	6.50e-66	59.01	ethylene-responsive transcription factor ERF113-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1JTV1	6.91e-59	55.30	ethylene-responsive transcription factor ERF113-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1KRN4	7.18e-24	38.77	ethylene-responsive transcription factor ERF113-like OS=Cucurbita maxima OX=3661...	[more]
A0A0A0K9G5	3.58e-22	68.75	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091830 PE=...	[more]
A0A5D3DLW8	1.01e-21	67.50	Ethylene-responsive transcription factor ERF113-like protein OS=Cucumis melo var...	[more]

BLAST of Cp4.1LG12g10150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g10150.1	Cp4.1LG12g10150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0097196	Shu complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003697	single-stranded DNA binding