Cp4.1LG12g10080 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g10080
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description40S ribosomal protein S27
LocationCp4.1LG12: 9704034 .. 9708818 (-)
RNA-Seq ExpressionCp4.1LG12g10080
SyntenyCp4.1LG12g10080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATATTGACCGGTACGGCGGAGTTGGAAACAAGCGGGAGATTTTGTGGCGGAGGCAGTCTGAAATGGCGCGTGGATGTTTATGTGCCTCCATTCTTTCTCCCTCGAAGCTTCCTTCTTTTAGTTTTTCGGCTGATACTAAAACTAAGTTGCTGCTTCGTTCCCCAGCTTCTTTTCCTCCGCCATCTAAGTTATTAGCTCTCAATTGCATGGTCGCTGGCCAAACCTCGCCCACTCCCACCGTCTAGCAGGGAGTTTATGGCCCTTGGACCGTTGATTCTTCCGACGTTCGAGAGGTTCAGCCTGCTTTCTCTTTCTCTTCTTTACTTATCCTTTAATTCTTTCTAATATTTGTCTCATACGATTTGGATTTGCGTTTTCTTTGTAAGTTGTAACTGATTATTTGTATTAACTCCATTATTCATGTGTATTATTGTATTAACTCCATTTGATTAAAGACTCTCATGTCGATCGAATGAATCATCCTTTCCACGGATTACCCTGGGAAAAAGAAATAGCCTGAATGGTAGAGGAATTTGTGTTTAGATAACTCCTTCCATGAGATTATGTAGGAATACTGTGCAAAAAGGTAATGTAGCCGCTTCTTCTAGCATCTTATCAAAATAAATCTCTTTCTTCTTCTTACAGGTCTCTTATTACCCTTCCTAACCCTTTGATTTTGGGTCTTTAGTCATAAACTCAACATGAAAACCAGTAATGAGTAATTCAACCTTTATATTACTTATTAGTTAAGTGATTTTAGGTTCATAGTTTCTCGATTGCATATGTATATGTGTTTCTCACAATTTATTTCACTCGAATTTCAAGATGATAAAACGAGAAATTCAAATTTCCTGTTTTTCACTACACTTAATGTTGGTGTGTTGTCTGGTTCTGGAATTTTCATGCAGCATACTATTGTAGCCTACCTAATGTTGTGTCATCTAAGCCTCCTTACCGACAAGATCATGGTGCCTGGCTCAATAATTATAAATGATTTGATCATAGTGCTTAAATGTGATAGCTGTCTTCATTTACTTGCTAGTAATTTAGGATTTGACGTGTACTCAATTTTCATTGGTGAAGACAGTCTCATGCGTTTGAACCTGCGTAGAGAGTCTATGACAAGATGAAGATGTTCTTATATATTTCAGTGTTAATTTGCTTACTGTGGCAGGTAATTTCATATAGAGCGGGCTTAGTGACAGCTGCTACCTCTTTCGTGATAACTCTTCATTGAGTGACGCACTTAAAAGCAAAATATTGGTATGTTGTATGCCTATGGTGAAGGAGGACGTTGAGAATTGTTGGGAGAGGAGTCCCAGATTGACTAATCGAAGGGTCATCATGGGTTCATAAGTAAGAATACTATCTTCGTTGGTATGAGACATTTTGGGGAAAGAAAAAGCAAAACTATGAAGCTTATGCTCAAAGTGGACAATATCATACTTATGGAGGATCGTAGTTCCTAATAGAGGATTGGGCTTATCTCGAGTTTTGATTCACATATATTTGACTGCAATTAAGCGCACTCTTCAAGCTCTATGGGTGCTTGATGTTGCTGGATCTTTGTTAACTTGCACAAATCTTGCACAACCAGCTGGGGACAGCATAGTGCAGTATGTTGTTGATAATCCATCGGCAGTCTGGTTTATTGGTCCTCTCTTTGCAGCACCGACTGGACTTGTCTTCAAAGAAGGTATTGGGTATTTTTAATATCTTCCAGGACTTTTAACTTACTATTTATGCCTTTAATGTTGTATTGATATGGCAAGCAAATTATAAGAAGGAAGAAAATATTGAAGATTAGTATGGTCGTATATTGATGAAGTCTCATATATCCCTATTGTAGTCTTGATGAAGCAGGCAAATAATAAGAAGAAAGAAGATACTGATGGCCGAGTCTACAATGCAGTTGAAGAGGACGAAGAGAAGGCCTTGATTCCAAAGCTTGAGCAGCAAGAGCTTAGTAAGAATGGTGATTAGAACATTTGGATGACAACCATCAGGAAGAACAGTGTCAAGGAGTCTTACTGTACAGGACGGTATGTCTGTACTGTCTTAATGCAGCCTGTATTATAATGATTAGTTTATACAGAACGCACTTAATTAGTTTTCTTTCAAACCTGTTTCCAGAATAAATGCCACTCTGATAAGCAAATGGCTCAATTGAGACATGCAATCGTATTTAGGAGAAAACAAAACTATACTCGAAACTCTACAAGCAATCCTATTAGTAAATTTCTCCCCTTTGTCATCTCATCTAAACCATTCAAATCTAGTAATCTGCCTAATCGAATTGGGAGAAGGATCACAGTCTCTCTCCCTCCATAGATGTTAAGTTCGTGATGAGATGTTTTGGTATTAGAATGGTTAAGTCGGAACACAAATGAGGAGAGAAACCCTTTGTTTGAACAAACATCAAGATATAGATCATAAACTTCGGTGCTAATTTATTCAATTGTTGTCCAACAAGTCTAGGGTGACGGGAGTAGGCAGGAAACAACAAGGTTCCAGATAGCAGGAAATAGGGAGCCCCTTAGAACTCCATCCATTACAGGCAAATTCTGGTGGAGAACCCCATTGTTAGCACCACCTCCCTTGCCGTCAAAGCAGTAGACAGGGGCTTGCCATTTCTCATCCTCCAGCACAGCACCCACTTCAAATGTCATCACATGAGCCTGTCTTCCTGCACAATTGGGGAAGGGAAAGTGAAAACCCTAATGTATAGCAGCAGATTAAGAATCGGGCAGACAGAGACAGAGGGTTACCAGTATAAAAGACCCAATGAACAGGCCTTTTGGTCTCAACATCCTCGTAATACCAGATGAAATCGACCTTCTCCCAGACATTGCAAAGGAAGCCATTGACATGGCGTTGACCAACATAATTGGCTCCATCCAGCCAATTGGGTCGGAGAATACCCACCTCGAACTGAAACNGATAATTGGCTCCATCGAGCCAATTGGGTCGGAGAATACCCACCTCGAGCTGAGCCGAAGAGCAAGTCTTGGAGGAGTCCAAAGTGTAGAAGAAGGAAGTGCCGTTGTTCCACTCGAGGTCGTAGAGGACGTTGCCGAGCTGGTGCTGGATGATGTTGAAATTACGACCATTGGGCCAGTCGTACCAGAGGTCGATTATCTGAAGAATTCCGCTGTAATTCATGAACAGAATTGAGTGGAATTGGAGAGGCCATGGGGTCGGAATAGGATCCTCCGAAACGGAACGCCGCACACTCACAGCCAGCAATGAAAGGACAAGGAAGAAGGTCGCCTTGGAAACCATGGCTTCTGGGGTCTCTCTCCTCTCTATGGCCAGTGGCCCAGTAATGGATGGAGGAGAAGATGGAATTTAACTGAAAAAAGAAAAAGTTGCAGAAAACAAACCTTATTTTCTGGATATCGATTTTCAAGTGGGAAAAATTTTAATTATTAAATATATGAATGGACGGTTATACCCTCTCCGAGTGCGTAGCCCTAGGCATTTCAAAAGTTAAAGGCTGAGATTTGTTTCTAAACAAATCCAACGGTGTTCACAGTTTCCAGCCGCTCCTTTATATTCATCCCAGACGGCGCTCTTCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTAAACTCCAAATTTCCCTGCTACATGTGGATTATGCCTCTTCATCTCTTCCGAATTCGGATCCTATAATTTTCACTTTCTTTCACGCTATTGACAGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCGTGTTCCTCCTTTTGACTTTTTTATTTTTTATTTTTTAATCTAATCGTTACTTTGATAATGGTGATCGAGCTGTTCTGTTGATTCTGAATGCAGGACGTGAAGTGTCAGGGTTGCTTTAACATGTAAGTATTCATCTTTTTCATGTATTATGGTTACATGTACTTTGTGTTTTCCCTAAAGGGTTGGATATTTAGGTTGTTTATTAAGTGAGTGATGACATAGAACTCTTTGAATGGAAAACAGAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGTGACTAAGTCCTTGTCTCAGAATTGGCTTGCAGTAGGATCAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCACATTTTGTCTTTGTCTCGGGTTTTCTTCGTTATGGATGTTGATTATTCAATTTTGTTTGAGAAGAAGAGCATTTAGGCACCGTTGTTGCAGTACATTGATCTTAATGTTGTCCATGAAACTAAGTTTTGTTTGAAGGAATTCACATCAAGTGTTTTTGCGAGCTCCCCAATTCCTTTTAATTGATCGGTCTGTTTAGATTTGCTTGCCTTTATGCCATGAGTTATAAATTTGTATCGTATTTTTAGCTGCATTTAATCTTTTGAAGTATTGACTTGTTCTTTCTCGAATAGTTTGTCATTTGTAAACCATTAGAATTATTTGTTCTTGTCTCAATGTCCTGGAGAGTATAGTGGTTGCCTATTTGCTCTGCTTTTAACCCCTTTTTTCAAGTGCGCTCATCACGTAGGTGTAGTGGTTGTCTATTTGTATGATATTTGCATTGTCATACAA

mRNA sequence

AAAATATTGACCGGTACGGCGGAGTTGGAAACAAGCGGGAGATTTTGTGGCGGAGGCAGTCTGAAATGGCGCGTGGATGTTTATGTGCCTCCATTCTTTCTCCCTCGAAGCTTCCTTCTTTTAGTTTTTCGGCTGATACTAAAACTAAGTTGCTGCTTCGTTCCCCAGCTTCTTTTCCTCCGCCATCTAAGTTATTAGCTCTCAATTGCATGGTCGCTGGCCAAACCTCGCCCACTCCCACCCGCACTCTTCAAGCTCTATGGGTGCTTGATGTTGCTGGATCTTTGTTAACTTGCACAAATCTTGCACAACCAGCTGGGGACAGCATAGTGCAGTATGTTGTTGATAATCCATCGGCAGTCTGGTTTATTGGTCCTCTCTTTGCAGCACCGACTGGACTTGTCTTCAAAGAAGGTATTGGATTAGTATGGTCGTATATTGATGAAGTCTCATATATCCCTATTGTAGTCTTGATGAAGCAGGCAAATAATAAGAAGAAAGAAGATACTGATGGCCGAGTCTACAATGCAGTTGAAGAGGACGAAGAGAAGGCCTTGATTCCAAAGCTTGAGCAGCAAGAGCTTAGTAAGAATGAACATTTGGATGACAACCATCAGGAAGAACAGTGTCAAGGAGTCTTACTGTACAGGACGAATAAATGCCACTCTGATAAGCAAATGGCTCAATTGAGACATGCAATCGGTGACGGGAGTAGGCAGGAAACAACAAGGTTCCAGATAGCAGGAAATAGGGAGCCCCTTAGAACTCCATCCATTACAGGCAAATTCTGGTGGAGAACCCCATTGTTAGCACCACCTCCCTTGCCGTCAAAGCAACAGAGACAGAGGGTTACCAGTATAAAAGACCCAATGAACAGGCCTTTTGGTCTCAACATCCTCGTAATACCAGATGAAATCGACCTTCTCCCAGACATTGCAAAGGAAGCCATTGACATGGCGTTGACCAACATAATTGGCTCCATCCAGCCAATTGGGTCGGAGAATACCCACCTCGAACTGAAACNGATAATTGGCTCCATCGAGCCAATTGGGTCGGAGAATACCCACCTCGAGCTGAGCCGAAGAGCAAGTCTTGGAGGAGTCCAAAGTGTAGAAGAAGGAAGTGCCGTTGTTCCACTCGAGGTCGTAGAGGACGTTGCCGAGCTGGTGCTGGATGATGTTGAAATTACGACCATTGGGCCAGTCGTACCAGAGGTCGATTATCTGAAGAATTCCGCTTGGAATTGGAGAGGCCATGGGGTCGGAATAGGATCCTCCGAAACGGAACGCCGCACACTCACAGCCAGCAATGAAAGGACAAGGAAGAAGGTCGCCTTGGAAACCATGGCTTCTGGGGTCTCTCTCCTCTCTATGGCCAGTGGCCCACCGCTCCTTTATATTCATCCCAGACGGCGCTCTTCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGTGACTAAGTCCTTGTCTCAGAATTGGCTTGCAGTAGGATCAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCACATTTTGTCTTTGTCTCGGGTTTTCTTCGTTATGGATGTTGATTATTCAATTTTGTTTGAGAAGAAGAGCATTTAGGCACCGTTGTTGCAGTACATTGATCTTAATGTTGTCCATGAAACTAAGTTTTGTTTGAAGGAATTCACATCAAGTGTTTTTGCGAGCTCCCCAATTCCTTTTAATTGATCGGTCTGTTTAGATTTGCTTGCCTTTATGCCATGAGTTATAAATTTGTATCGTATTTTTAGCTGCATTTAATCTTTTGAAGTATTGACTTGTTCTTTCTCGAATAGTTTGTCATTTGTAAACCATTAGAATTATTTGTTCTTGTCTCAATGTCCTGGAGAGTATAGTGGTTGCCTATTTGCTCTGCTTTTAACCCCTTTTTTCAAGTGCGCTCATCACGTAGGTGTAGTGGTTGTCTATTTGTATGATATTTGCATTGTCATACAA

Coding sequence (CDS)

ATGGCGCGTGGATGTTTATGTGCCTCCATTCTTTCTCCCTCGAAGCTTCCTTCTTTTAGTTTTTCGGCTGATACTAAAACTAAGTTGCTGCTTCGTTCCCCAGCTTCTTTTCCTCCGCCATCTAAGTTATTAGCTCTCAATTGCATGGTCGCTGGCCAAACCTCGCCCACTCCCACCCGCACTCTTCAAGCTCTATGGGTGCTTGATGTTGCTGGATCTTTGTTAACTTGCACAAATCTTGCACAACCAGCTGGGGACAGCATAGTGCAGTATGTTGTTGATAATCCATCGGCAGTCTGGTTTATTGGTCCTCTCTTTGCAGCACCGACTGGACTTGTCTTCAAAGAAGGTATTGGATTAGTATGGTCGTATATTGATGAAGTCTCATATATCCCTATTGTAGTCTTGATGAAGCAGGCAAATAATAAGAAGAAAGAAGATACTGATGGCCGAGTCTACAATGCAGTTGAAGAGGACGAAGAGAAGGCCTTGATTCCAAAGCTTGAGCAGCAAGAGCTTAGTAAGAATGAACATTTGGATGACAACCATCAGGAAGAACAGTGTCAAGGAGTCTTACTGTACAGGACGAATAAATGCCACTCTGATAAGCAAATGGCTCAATTGAGACATGCAATCGGTGACGGGAGTAGGCAGGAAACAACAAGGTTCCAGATAGCAGGAAATAGGGAGCCCCTTAGAACTCCATCCATTACAGGCAAATTCTGGTGGAGAACCCCATTGTTAGCACCACCTCCCTTGCCGTCAAAGCAACAGAGACAGAGGGTTACCAGTATAAAAGACCCAATGAACAGGCCTTTTGGTCTCAACATCCTCGTAATACCAGATGAAATCGACCTTCTCCCAGACATTGCAAAGGAAGCCATTGACATGGCGTTGACCAACATAATTGGCTCCATCCAGCCAATTGGGTCGGAGAATACCCACCTCGAACTGAAACNGATAATTGGCTCCATCGAGCCAATTGGGTCGGAGAATACCCACCTCGAGCTGAGCCGAAGAGCAAGTCTTGGAGGAGTCCAAAGTGTAGAAGAAGGAAGTGCCGTTGTTCCACTCGAGGTCGTAGAGGACGTTGCCGAGCTGGTGCTGGATGATGTTGAAATTACGACCATTGGGCCAGTCGTACCAGAGGTCGATTATCTGAAGAATTCCGCTTGGAATTGGAGAGGCCATGGGGTCGGAATAGGATCCTCCGAAACGGAACGCCGCACACTCACAGCCAGCAATGAAAGGACAAGGAAGAAGGTCGCCTTGGAAACCATGGCTTCTGGGGTCTCTCTCCTCTCTATGGCCAGTGGCCCACCGCTCCTTTATATTCATCCCAGACGGCGCTCTTCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGTGACTAA

Protein sequence

MARGCLCASILSPSKLPSFSFSADTKTKLLLRSPASFPPPSKLLALNCMVAGQTSPTPTRTLQALWVLDVAGSLLTCTNLAQPAGDSIVQYVVDNPSAVWFIGPLFAAPTGLVFKEGIGLVWSYIDEVSYIPIVVLMKQANNKKKEDTDGRVYNAVEEDEEKALIPKLEQQELSKNEHLDDNHQEEQCQGVLLYRTNKCHSDKQMAQLRHAIGDGSRQETTRFQIAGNREPLRTPSITGKFWWRTPLLAPPPLPSKQQRQRVTSIKDPMNRPFGLNILVIPDEIDLLPDIAKEAIDMALTNIIGSIQPIGSENTHLELKXIIGSIEPIGSENTHLELSRRASLGGVQSVEEGSAVVPLEVVEDVAELVLDDVEITTIGPVVPEVDYLKNSAWNWRGHGVGIGSSETERRTLTASNERTRKKVALETMASGVSLLSMASGPPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Homology
[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 8.3e-44
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 571
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 3.8e-41
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 571
           CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 8.6e-41
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRK 569
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-40
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRK 569
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.2e-36
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 571
           C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 273 bits (699), Expect = 5.69e-86
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 441 PLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAEL 500
           PLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAEL
Sbjct: 20  PLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAEL 79

Query: 501 EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLT 560
           EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLT
Sbjct: 80  EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLT 139

Query: 561 EGCSFRRKGD 570
           EGCSFRRKGD
Sbjct: 140 EGCSFRRKGD 149

[Close]
BLAST of Cp4.1LG12g10080 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 271 bits (694), Expect = 2.46e-84
Identity = 134/147 (91.16%), Postives = 137/147 (93.20%), Query Frame = 0 

Query: 425 ETMASGVSLL-SMASGPPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLI 484
           E MA G  +L +  S  PLLYI PRRRS+PVSLHSSYRPVSLANSRWDFRVRDPDGCFLI
Sbjct: 63  EFMALGPLILPTFESFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLI 122

Query: 485 IMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 544
           IMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG
Sbjct: 123 IMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 182

Query: 545 NCQTVLCQPTGGRARLTEGCSFRRKGD 570
           NCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 183 NCQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]
BLAST of Cp4.1LG12g10080 vs. NCBI nr
Match: KAG6592828.1 (40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (562), Expect = 1.75e-62
Identity = 202/652 (30.98%), Postives = 229/652 (35.12%), Query Frame = 0 

Query: 1   MARGCLCASILSPSKLPSFSFSADTKTKLLLRSPASFPPPSKLLALNCMVAGQTSPTPT- 60
           MA GCLCASILSPS L S  +SAD KTKLLL SP +FP PSKL AL C  AGQ+SPT T 
Sbjct: 1   MACGCLCASILSPSNLRSLDYSADIKTKLLLPSPVAFPSPSKLSALKCKAAGQSSPTSTV 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YRGIYGPWTVDPSDVREVILYRAGLVTAATSFVIASSVAFLPENSSLSDTLKQNLDLLYA 120

Query: 121 ---------------------RTLQALWVLDVAGSLLTCTNLAQPAGDSIVQYVVDNPSA 180
                                RTLQA WVL VAGSL+   NLAQPAGDS+VQYVVDNPSA
Sbjct: 121 LGGGGLGLSLVLIHIYVTAIKRTLQAFWVLGVAGSLVAYVNLAQPAGDSLVQYVVDNPSA 180

Query: 181 VWFIGPLFAAPTGLVFKEGIGLVWSYIDEVSYIPIVVLMKQANNKKKEDTDGRVYNAVEE 240
           VWFIGPLFAA TGLVFKEG+                                        
Sbjct: 181 VWFIGPLFAALTGLVFKEGL---------------------------------------- 240

Query: 241 DEEKALIPKLEQQELSKNEHLDDNHQEEQCQGVLLYRTNKCHSDKQMAQLRHAIGDGSRQ 300
                                        C G L                          
Sbjct: 241 -----------------------------CYGKL-------------------------- 300

Query: 301 ETTRFQIAGNREPLRTPSITGKFWWRTPLLAPPPLPSKQQRQRVTSIKDPMNRPFGLNIL 360
                                                                  G+   
Sbjct: 301 -----------------------------------------------------EAGILTF 360

Query: 361 VIPDEIDLLPDIAKEAIDMALTNIIGSIQPIGSENTHLELKXIIGSIEPIGSENTHLELS 420
           VIP                  T ++G +  +      L L         +GS        
Sbjct: 361 VIP------------------TLLLGHLSGLMDNGAKLGL---------LGS-------- 379

Query: 421 RRASLGGVQSVEEGSAVVPLEVVEDVAELVLDDVEITTIGPVVPEVDYLKNSAWNWRGHG 480
                          A+  +       + + DD+   ++        ++ N         
Sbjct: 421 -------------WMALFVIFAGRKFTQPIKDDIGDKSV--------FMFNDL------- 379

Query: 481 VGIGSSETERRTLTASNERTRKKVALETMASGVSLLSMASGPPLLYIHPRRRSSPVSLHS 540
                 E E++ L A  E+                                         
Sbjct: 481 -----GEDEKKALIAKLEQ----------------------------------------- 379

Query: 541 SYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFF 570
                           ++ D   LI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFF
Sbjct: 541 ----------------QELDSSLLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFF 379

[Close]
BLAST of Cp4.1LG12g10080 vs. NCBI nr
Match: KAF5449188.1 (hypothetical protein F2P56_029664, partial [Juglans regia])

HSP 1 Score: 184 bits (467), Expect = 4.28e-52
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 481 FLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV 540
           FL  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV
Sbjct: 25  FLFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV 84

Query: 541 VCGNCQTVLCQPTGGRARLTEGCSFRRKGD 570
           VCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 85  VCGNCQTVLCQPTGGRARLTEGCSFRRKGD 114

[Close]
BLAST of Cp4.1LG12g10080 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010028919.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010057712.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 40S ribosomal protein S27-2 [Juglans regia] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >XP_030450730.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030452017.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030513362.1 40S ribosomal protein S27-2 [Rhodamnia argentea] >XP_030956657.1 40S ribosomal protein S27-2 [Quercus lobata] >XP_031276672.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_031276714.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_038906694.1 40S ribosomal protein S27-2-like [Benincasa hispida] >XP_041012643.1 40S ribosomal protein S27-2 [Juglans microcarpa x Juglans regia] >XP_042982589.1 40S ribosomal protein S27-2 [Carya illinoinensis] >KAA0066103.1 Ribosomal protein S27e [Cucumis melo var. makuwa] >KAF3943728.1 hypothetical protein CMV_029739 [Castanea mollissima] >KAF8013305.1 hypothetical protein BT93_I1220 [Corymbia citriodora subsp. variegata] >KAG6579093.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014613.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181 bits (460), Expect = 1.87e-51
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 570
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy TrEMBL
Match: A0A6J1JM72 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1)

HSP 1 Score: 273 bits (699), Expect = 2.76e-86
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 441 PLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAEL 500
           PLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAEL
Sbjct: 20  PLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAEL 79

Query: 501 EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLT 560
           EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLT
Sbjct: 80  EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLT 139

Query: 561 EGCSFRRKGD 570
           EGCSFRRKGD
Sbjct: 140 EGCSFRRKGD 149

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy TrEMBL
Match: A0A6J1GP15 (40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=1)

HSP 1 Score: 271 bits (694), Expect = 1.19e-84
Identity = 134/147 (91.16%), Postives = 137/147 (93.20%), Query Frame = 0 

Query: 425 ETMASGVSLL-SMASGPPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLI 484
           E MA G  +L +  S  PLLYI PRRRS+PVSLHSSYRPVSLANSRWDFRVRDPDGCFLI
Sbjct: 63  EFMALGPLILPTFESFQPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLI 122

Query: 485 IMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 544
           IMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG
Sbjct: 123 IMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCG 182

Query: 545 NCQTVLCQPTGGRARLTEGCSFRRKGD 570
           NCQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 183 NCQTVLCQPTGGRARLTEGCSFRRKGD 209

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy TrEMBL
Match: A0A0A0K9G0 (40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 208 bits (529), Expect = 4.49e-61
Identity = 108/141 (76.60%), Postives = 115/141 (81.56%), Query Frame = 0 

Query: 434 LSMASGPPLLYIHPRRRSSPVSLHSSYRPVSLANSR----WDFRVRDPDGCFLIIMVLQN 493
           L +  G PLLYIHPRRRSSP+S  SS+R   + +        F +       LIIMVLQN
Sbjct: 6   LCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAP-LPLIIMVLQN 65

Query: 494 DIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVL 553
           DIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVL
Sbjct: 66  DIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVL 125

Query: 554 CQPTGGRARLTEGCSFRRKGD 570
           CQPTGGRA+LTEGCSFRRKGD
Sbjct: 126 CQPTGGRAKLTEGCSFRRKGD 145

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy TrEMBL
Match: A0A6J1JTM3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 9.08e-52
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 570
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. ExPASy TrEMBL
Match: B9RG16 (40S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 9.08e-52
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 570
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 179.9 bits (455), Expect = 5.9e-45
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 571
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 169.9 bits (429), Expect = 6.1e-42
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRK 569
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]
BLAST of Cp4.1LG12g10080 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 169.5 bits (428), Expect = 7.9e-42
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRK 569
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]
BLAST of Cp4.1LG12g10080 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 150.6 bits (379), Expect = 3.8e-36
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 485 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 544
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 545 CQTVLCQPTGGRARLTEGCSFRRKGD 571
           CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]
BLAST of Cp4.1LG12g10080 vs. TAIR 10
Match: AT1G28140.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 60  RTLQALWVLDVAGSLLTCTNLAQPAGDSIVQYVVDNPSAVWFIGPLFAAPTGLVFKEGI 119
           RTLQALW L   GS  T   LA+PAGD++V YVVD+PSAVWF+GPLFA+ TGLVFKEG+
Sbjct: 135 RTLQALWALGFVGSFATYAALARPAGDNLVHYVVDHPSAVWFVGPLFASLTGLVFKEGL 193

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g10080 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2F18.3e-4496.5140S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2[more]
Q965643.8e-4194.1940S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2[more]
O646508.6e-4192.8640S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1[more]
Q8L9531.1e-4094.0540S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2[more]
P479032.2e-3684.8840S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=... [more]
BLAST of Cp4.1LG12g10080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022991567.15.69e-86100.0040S ribosomal protein S27-2-like [Cucurbita maxima][more]
XP_022953224.12.46e-8491.16uncharacterized protein LOC111455834 [Cucurbita moschata][more]
KAG6592828.11.75e-6230.9840S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF5449188.14.28e-5297.78hypothetical protein F2P56_029664, partial [Juglans regia][more]
XP_002512685.11.87e-51100.0040S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro... [more]
BLAST of Cp4.1LG12g10080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JM722.76e-86100.0040S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1[more]
A0A6J1GP151.19e-8491.1640S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=... [more]
A0A0A0K9G04.49e-6176.6040S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1[more]
A0A6J1JTM39.08e-52100.0040S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1[more]
B9RG169.08e-52100.0040S ribosomal protein S27 OS=Ricinus communis OX=3988 GN=RCOM_1300070 PE=3 SV=1[more]
BLAST of Cp4.1LG12g10080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G61110.15.9e-4596.51ribosomal protein S27 [more]
AT2G45710.16.1e-4292.86Zinc-binding ribosomal protein family protein [more]
AT5G47930.17.9e-4294.05Zinc-binding ribosomal protein family protein [more]
AT3G61111.13.8e-3681.40Zinc-binding ribosomal protein family protein [more]
AT1G28140.11.4e-1769.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023407Ribosomal protein S27, zinc-binding domain superfamilyGENE3D2.20.25.100coord: 488..568
e-value: 1.0E-47
score: 162.0
IPR000592Ribosomal protein S27PFAMPF01667Ribosomal_S27ecoord: 513..567
e-value: 8.3E-26
score: 89.5
IPR000592Ribosomal protein S27PANTHERPTHR1159440S RIBOSOMAL PROTEIN S27coord: 438..569
IPR000592Ribosomal protein S27PROSITEPS01168RIBOSOMAL_S27Ecoord: 521..553
IPR000592Ribosomal protein S27HAMAPMF_00371Ribosomal_S27ecoord: 507..567
score: 16.744337
IPR019275Protein of unknown function DUF2301PFAMPF10063DUF2301coord: 60..122
e-value: 7.8E-11
score: 42.6
NoneNo IPR availablePANTHERPTHR11594:SF1640S RIBOSOMAL PROTEIN S27-1-RELATEDcoord: 438..569
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 513..567

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g10080.1Cp4.1LG12g10080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome