Cp4.1LG12g09420 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g09420
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiondormancy-associated protein homolog 4-like
LocationCp4.1LG12: 5723738 .. 5723965 (+)
RNA-Seq ExpressionCp4.1LG12g09420
SyntenyCp4.1LG12g09420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCTGTTCTTCACAAGCTATGGGACGGAACGCTGTCAGACACCGGCTTCGGAATGCTTCGCAAGCATGATTCCTTTTCGGTATCGGAATCGCCTCTGGTTAAGATTTCCGGTGACCTTCCTGTAACTCGGAGCATCTTCATTCTCAGGAGTAACTCCGATTTCAGGAGCTTCTTGGATGATCGTAATGGAAGGATGATTGATTCTCCCGCGGGAATAATCTGA

mRNA sequence

ATGACTGCTGTTCTTCACAAGCTATGGGACGGAACGCTGTCAGACACCGGCTTCGGAATGCTTCGCAAGCATGATTCCTTTTCGGTATCGGAATCGCCTCTGGTTAAGATTTCCGGTGACCTTCCTGTAACTCGGAGCATCTTCATTCTCAGGAGTAACTCCGATTTCAGGAGCTTCTTGGATGATCGTAATGGAAGGATGATTGATTCTCCCGCGGGAATAATCTGA

Coding sequence (CDS)

ATGACTGCTGTTCTTCACAAGCTATGGGACGGAACGCTGTCAGACACCGGCTTCGGAATGCTTCGCAAGCATGATTCCTTTTCGGTATCGGAATCGCCTCTGGTTAAGATTTCCGGTGACCTTCCTGTAACTCGGAGCATCTTCATTCTCAGGAGTAACTCCGATTTCAGGAGCTTCTTGGATGATCGTAATGGAAGGATGATTGATTCTCCCGCGGGAATAATCTGA

Protein sequence

MTAVLHKLWDGTLSDTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDFRSFLDDRNGRMIDSPAGII
Homology
BLAST of Cp4.1LG12g09420 vs. NCBI nr
Match: KAG7013965.1 (Dormancy-associated protein-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (270), Expect = 7.55e-29
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1  MTAVLHKLWDGTL----SDTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDF 60
          MTAVLHKLWDGTL    SDTGFGMLRKHDSFSVSESPLVKISGD+PVTRS+FILRSNSDF
Sbjct: 26 MTAVLHKLWDGTLAGPMSDTGFGMLRKHDSFSVSESPLVKISGDIPVTRSVFILRSNSDF 85

BLAST of Cp4.1LG12g09420 vs. NCBI nr
Match: XP_038896212.1 (dormancy-associated protein homolog 4-like [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 6.04e-25
Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFIL-RSNSD 60
          MT  LHKLWD TL+    DTG G LRK+D  S SESP VKISGD+PVTRSI IL R NS 
Sbjct: 1  MTTFLHKLWDETLAGPTPDTGLGKLRKYDPVSASESPPVKISGDIPVTRSITILTRGNSG 60

Query: 61 FRSFLDDRNGRMIDS 70
          FR+FLDDRNGRMIDS
Sbjct: 61 FRNFLDDRNGRMIDS 75

BLAST of Cp4.1LG12g09420 vs. NCBI nr
Match: KAG6593570.1 (Dormancy-associated protein-like 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025915.1 Dormancy-associated protein-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 9.79e-24
Identity = 53/77 (68.83%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDF 60
          M   LHKLWD TL+    DTG G LRK+DS SV+ESP VKIS D+PVTRSI ILRSNSDF
Sbjct: 1  MDTFLHKLWDETLAGPTPDTGLGKLRKYDSLSVAESPPVKISKDIPVTRSITILRSNSDF 60

Query: 61 RSFLDDRNGRMIDSPAG 73
          RS  DDR+ RMID  AG
Sbjct: 61 RSNSDDRSRRMIDLLAG 77

BLAST of Cp4.1LG12g09420 vs. NCBI nr
Match: XP_023514880.1 (dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 2.06e-23
Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDF 60
          M   LHKLWD TL+    DTG G LRK+DS S +ESP VKIS D+PVTRSI ILRSNSDF
Sbjct: 1  MNTFLHKLWDETLAGPTPDTGLGKLRKYDSLSAAESPPVKISKDIPVTRSITILRSNSDF 60

Query: 61 RSFLDDRNGRMIDSPAG 73
          RS  DDR+ RMID  AG
Sbjct: 61 RSNSDDRSRRMIDLLAG 77

BLAST of Cp4.1LG12g09420 vs. NCBI nr
Match: KAG6575424.1 (Trihelix transcription factor ASIL2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 3.28e-22
Identity = 51/62 (82.26%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MTAVLHKLWDGTL----SDTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDF 58
          MTAVLHKLWDGTL    SDTGFGMLRKHDSFSVSESPLVKISGD+PVTRS+FILR    F
Sbjct: 1  MTAVLHKLWDGTLAGPMSDTGFGMLRKHDSFSVSESPLVKISGDIPVTRSVFILRRIISF 60

BLAST of Cp4.1LG12g09420 vs. ExPASy TrEMBL
Match: A0A6J1KIP1 (dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111494315 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.33e-22
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDF 60
          M   LHKLWD TL+    DTG G LRK+DS S +ESP VKIS D+PVTRSI ILRSNSDF
Sbjct: 1  MNTFLHKLWDETLAGPTPDTGLGKLRKYDSLSAAESPPVKISKDIPVTRSITILRSNSDF 60

Query: 61 RSFLDDRNGRMIDSPAG 73
          RS  D R+ RMID  AG
Sbjct: 61 RSNSDYRSRRMIDLLAG 77

BLAST of Cp4.1LG12g09420 vs. ExPASy TrEMBL
Match: A0A0A0K9D5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448700 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.23e-21
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRS-NSD 60
          M++ LHKLWD TL+    D G G LRK+D  S SES  VKISGD+PVTRSI ILR  N D
Sbjct: 1  MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60

Query: 61 FRSFLDDRNGRMIDSP 71
          FR+  DDR+GRMIDSP
Sbjct: 61 FRNLADDRDGRMIDSP 76

BLAST of Cp4.1LG12g09420 vs. ExPASy TrEMBL
Match: A0A6J1DF61 (dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC111019516 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.34e-21
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDF 60
          MT+ LHKLWD T++    DTG G LRK+DS S SE P +KIS ++PVTRSI ILR NSDF
Sbjct: 1  MTSFLHKLWDETVAGPTPDTGLGKLRKYDSISPSELPPIKISDEIPVTRSITILRRNSDF 60

Query: 61 RSFLDDRNGRMIDSPAGI 74
          R+  +DR+ RM DS AGI
Sbjct: 61 RTSSEDRHRRMPDSIAGI 78

BLAST of Cp4.1LG12g09420 vs. ExPASy TrEMBL
Match: A0A5A7UTX0 (Dormancy-associated protein-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001500 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.53e-21
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRS-NSD 60
          MT  LHK+WD TL+    D G G LRK+D  S SESP VKI+GD+PVTRSI ILR  N D
Sbjct: 1  MTTFLHKIWDETLAGPTPDNGLGKLRKYDPVSASESPPVKIAGDVPVTRSITILRRRNYD 60

Query: 61 FRSFLDDRNGRMIDSP 71
            +F DDR+GRMIDSP
Sbjct: 61 LGNFSDDRDGRMIDSP 76

BLAST of Cp4.1LG12g09420 vs. ExPASy TrEMBL
Match: A0A6J1HKD6 (dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111464350 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.07e-19
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1  MTAVLHKLWDGTLS----DTGFGMLRKHDSFSVSESPLVKISGDLPVTRSIFILRSNSDF 60
          M   LHKLWD TL+    DTG G LRK+DS SV+ESP VKIS D+PVTRSI ILRSNSD 
Sbjct: 1  MDTFLHKLWDETLAGPTPDTGLGKLRKYDSLSVAESPPVKISKDIPVTRSITILRSNSD- 60

Query: 61 RSFLDDRNGRMIDSPAG 73
               DR+ RMID  AG
Sbjct: 61 -----DRSRRMIDLLAG 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7013965.17.55e-2985.94Dormancy-associated protein-like 4, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_038896212.16.04e-2572.00dormancy-associated protein homolog 4-like [Benincasa hispida][more]
KAG6593570.19.79e-2468.83Dormancy-associated protein-like 4, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_023514880.12.06e-2367.53dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo][more]
KAG6575424.13.28e-2282.26Trihelix transcription factor ASIL2, partial [Cucurbita argyrosperma subsp. soro... [more]
Match NameE-valueIdentityDescription
A0A6J1KIP12.33e-2266.23dormancy-associated protein homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A0A0K9D51.23e-2164.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448700 PE=3 SV=1[more]
A0A6J1DF611.34e-2161.54dormancy-associated protein homolog 4-like OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A5A7UTX03.53e-2163.16Dormancy-associated protein-like protein 4 isoform X2 OS=Cucumis melo var. makuw... [more]
A0A6J1HKD63.07e-1963.64dormancy-associated protein homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33565:SF26DORMANCY-ASSOCIATED PROTEIN HOMOLOG 4coord: 4..73
IPR008406Dormancy/auxin associated proteinPANTHERPTHR33565DORMANCY-ASSOCIATED PROTEIN 1coord: 4..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g09420.1Cp4.1LG12g09420.1mRNA