Cp4.1LG12g09150 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g09150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontranscription initiation factor TFIID subunit 9
LocationCp4.1LG12: 5904659 .. 5907882 (-)
RNA-Seq ExpressionCp4.1LG12g09150
SyntenyCp4.1LG12g09150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCTTAGATCCATTTTGGGCCTTGAATCCATCGGAAATCGGGTGCCATTATTCGGGGCACCGGATCCGACACCACGACTTCCATGCGCTTAATTTGGGGGAGAGGAGACGAGACGAGACGAGAACGAAGAGCGACGTCTGGGCTTGGAAGCCGATCTTTGAAGCTTTGGGTGAAACTCAAATTACAAAATTGTTAGGGCGAGGAATCAAGACGATGAGTCGTGGAAGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGATATGACAACCAAAACACTAATTTCTCGCCCGAAGCTCGACCTTCTCAACTGGGTACGTTGCTGTTTATCTTCTTTCCGTTCATGATTCCTCCATCGAGTTCCTACTTTTTTTCCACTTTCATTCAATTGTTTCTGGATGATTTCAGACGATTTTAGGGCATTTGATTTTACGGGTCGAATTTGTTCGTTATTTGATTGTTATTTTGATTTTGATGTTTTCTATTTTGAATTGCTGACTCTTGAAACAAAATCGTAGCATATAATTTAGAAATTTCGTTTTCTCGCGTCACTTGGATGTTTGAAGTTGAGAGAAATTAGGATGGAAAAGTGGAAATAGTGTGAAATTTTAAGTTTGAGAAGCCAATTTGTTGTCGTTCTCTGTTTATTTTCAAGCTTCAAGATTGGCCTATGGATTGCAAAATCAATTTCGAAAGACATTGAATTCATCTCTAGAGTATGCTGTATCTGAAAGTTGCTGGAATTTTTCATACCGGAAATCAAATCCTATTCGATCACTGAACTGTTTATTTTGTTCACGTTGTTACTTAAACAATCAAACGATTTTTTTGCTTAAATTCAATTCTTATACAAGTTTAGAGAAAAGAGCAAAACATAAGTACGAAGCATATGAAAGTCTAGGAACTTATAATTGTTATTGCCTTCTTCAAATAATGCTCTACTTCATAATTATCAAACGTGCAATGTAAAACAAGCTGGTTATGTTTGATAGAATATCAGTTTAGCAGATTGCAAGAATGATTTAAATCTCTTGTGCAGGTGACAGGGGCGTTAAGGAGATGTCTGAGGGAGACGAGGATCTGCCCAGAGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCCCGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTACGTTGTTGACGTATTGACGGATGCGCAAGTATACTCGGAGCATGCAGCCAAGGCTGCTATCGACTGTGATGATGTGAAGCTTGCCATCCAGTCCAAAGTTAATTTCAGCTTCTCTCAACCTCCTCCAAGAGAGGTAAGATTGCTTAACAGTCCCATTGGAAGCTTGAAGTATCTGCATGGGAAAGAAAATGTAGTCTCGAAGAAAGAAATTTAGTGTAACGGGCTAATCCTACCACTAGGAGATATTATCCTCTTTGAGCTTTTCCTTTCGGGTTCCTCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTCCACACCTTTATAAAGAATGTTTCGTTGTCCTCCCCAACCGAGGTAGGATCTCACATTTAGATGGGAGTGATACTAGATCATATTCACTGATTTTTGCTATCTTCTCTCCTATTGAAGGAAAAGTGTTTAACCATGTGTTTCTTTTTTGTTAGGTTCTTCTAGAGTTGGCTAGAAACCGGAATAAAATTCCATTGCCAAGGTCAATAGGCGGGCCTGGTATCGCGCTCCCACCCGATCAAGATACATTGCTCAGTCCCAACTATCAACTGGCAATCCCGAGGAAGCGACAAGTTGAAGCCATGGAGGAAACAGAGGAGGACGAAGGTGTCGACGCAGTTCCATCCCAAGAACCCAGCACAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCTTTGTCTAAACGTCCAAAAATAACATAGCTGTTTTCCCTTCTTGTTTCGCTTTCCTCTACTTCCCCAATTAAAAGGGTGTTTGAAATTTCATATAGATTCACTCAAAGTTGGGGGAGGTATTGTTGGATGTTATCAATCTATTGTATAATACTGTGTTTAAGAATGAACTCCAAACAAGAATGCTTCAATTTTGATTATGAACTTTGTTGAATTTCAGTTACTATTGAGTTGTTCTGTACAAAGAGCACTATATATACAGAGTTGTTTGATAATCACAAGACGTTTATCATAGACAATCTAAGTTATGGTCAGCTCCAGAAAACAAACGGTTGTAGGAGCAACTGGGGACAGACCGGGGGTTCGATACCGTGATCCCGCGGTCGTACATTCGCTGGATTTCTTCCCTGCACTCCATCAACGACTTATCGGGTATGGCAGGAGTTAGCTCAACCACATCACCCATCTTCAGCTTGCACTTTGGATCATTCACTCGCTCGTGGTTAACCCTTAGTCTCAAGTCTTCTTTCATGGGAAAGCCATGGGAGGTCGATCTCGAGCTTCCTTGCCCAATTCTTTTCATTAAATCTGTGATCGTCGAATTTGCAGGGAACTCTTGAACTGACATCTGCAGTAAGTAAAATACTGTTGTTCAATGACATCACTTAACCGAACTCGATAACGTTCAACTAATATAACATGAAAACGAGTAACAAACCTTGTCATTCTCAATCATTACGACGAATACAGGTCCATCTTGAAAATCACATTGGGTTTTGTACGAATATGGACAGCCTTCAGAATGAGAAGGGAATTTGCAGTGTGGCTTAATGGAATCAGCGTTGCCAACGGAAGATCCATCTTTGCTCATAGCCATACACTGCCACGTGACAACCCATCGAGCCCATTCGACCATCTGAACGACGAACGAAGAGTACTCACTGTCACCCTCCTTATATCTCCAATGAGCGGCAATGCCAAACTCCGCTTGCAAATGCATCTCTTCTGTCCTAATTTGAACTTCAAGGGGCACCATGTCTTCAAACACTACAACCGTGTGTAGAGATCGATACCTTCAAATCATCGAGTCGAGTAAGAAATGGAAAGAACAAATAAATAAAGGATACAGGAGAAGATGTCATTTTGAGCCACAACATACCCATTAAACTTGGGTCGACTAATGTAATCTTTGCATCGCCCAGGCACTTCAGACCATAACTGGTGAACTATTCTTAAAGCTCTCAGGCAGTCTTCTTCGTTTTTTACAATAAGACGTAAGCCGTGAATGTCGTGGATTTCGTTCATGGTCAACTTCTTTCT

mRNA sequence

GCCTTAGATCCATTTTGGGCCTTGAATCCATCGGAAATCGGGTGCCATTATTCGGGGCACCGGATCCGACACCACGACTTCCATGCGCTTAATTTGGGGGAGAGGAGACGAGACGAGACGAGAACGAAGAGCGACGTCTGGGCTTGGAAGCCGATCTTTGAAGCTTTGGGTGAAACTCAAATTACAAAATTGTTAGGGCGAGGAATCAAGACGATGAGTCGTGGAAGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGATATGACAACCAAAACACTAATTTCTCGCCCGAAGCTCGACCTTCTCAACTGGGTGACAGGGGCGTTAAGGAGATGTCTGAGGGAGACGAGGATCTGCCCAGAGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCCCGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTACGTTGTTGACGTATTGACGGATGCGCAAGTATACTCGGAGCATGCAGCCAAGGCTGCTATCGACTGTGATGATGTGAAGCTTGCCATCCAGTCCAAAGTTCTTCTAGAGTTGGCTAGAAACCGGAATAAAATTCCATTGCCAAGGTCAATAGGCGGGCCTGGTATCGCGCTCCCACCCGATCAAGATACATTGCTCAGTCCCAACTATCAACTGGCAATCCCGAGGAAGCGACAAGTTGAAGCCATGGAGGAAACAGAGGAGGACGAAGGTGTCGACGCAGTTCCATCCCAAGAACCCAGCACAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCTTTGTCTAAACGTCCAAAAATAACATAGCTGTTTTCCCTTCTTGTTTCGCTTTCCTCTACTTCCCCAATTAAAAGGGTGTTTGAAATTTCATATAGATTCACTCAAAGTTGGGGGAGGTATTGTTGGATGTTATCAATCTATTGTATAATACTGTGTTTAAGAATGAACTCCAAACAAGAATGCTTCAATTTTGATTATGAACTTTGTTGAATTTCAGTTACTATTGAGTTGTTCTGTACAAAGAGCACTATATATACAGAGTTGTTTGATAATCACAAGACGTTTATCATAGACAATCTAAGTTATGGTCAGCTCCAGAAAACAAACGGTTGTAGGAGCAACTGGGGACAGACCGGGGGTTCGATACCGTGATCCCGCGGTCGTACATTCGCTGGATTTCTTCCCTGCACTCCATCAACGACTTATCGGGTATGGCAGGAGTTAGCTCAACCACATCACCCATCTTCAGCTTGCACTTTGGATCATTCACTCGCTCGTGGTTAACCCTTAGTCTCAAGTCTTCTTTCATGGGAAAGCCATGGGAGGTCGATCTCGAGCTTCCTTGCCCAATTCTTTTCATTAAATCTGTGATCGTCGAATTTGCAGGGAACTCTTGAACTGACATCTGCAGTAAGTAAAATACTGTTGTTCAATGACATCACTTAACCGAACTCGATAACGTTCAACTAATATAACATGAAAACGAGTAACAAACCTTGTCATTCTCAATCATTACGACGAATACAGGTCCATCTTGAAAATCACATTGGGTTTTGTACGAATATGGACAGCCTTCAGAATGAGAAGGGAATTTGCAGTGTGGCTTAATGGAATCAGCGTTGCCAACGGAAGATCCATCTTTGCTCATAGCCATACACTGCCACGTGACAACCCATCGAGCCCATTCGACCATCTGAACGACGAACGAAGAGTACTCACTGTCACCCTCCTTATATCTCCAATGAGCGGCAATGCCAAACTCCGCTTGCAAATGCATCTCTTCTGTCCTAATTTGAACTTCAAGGGGCACCATGTCTTCAAACACTACAACCGTGTGTAGAGATCGATACCCATTAAACTTGGGTCGACTAATGTAATCTTTGCATCGCCCAGGCACTTCAGACCATAACTGGTGAACTATTCTTAAAGCTCTCAGGCAGTCTTCTTCGTTTTTTACAATAAGACGTAAGCCGTGAATGTCGTGGATTTCGTTCATGGTCAACTTCTTTCT

Coding sequence (CDS)

GCCTTAGATCCATTTTGGGCCTTGAATCCATCGGAAATCGGGTGCCATTATTCGGGGCACCGGATCCGACACCACGACTTCCATGCGCTTAATTTGGGGGAGAGGAGACGAGACGAGACGAGAACGAAGAGCGACGTCTGGGCTTGGAAGCCGATCTTTGAAGCTTTGGGTGAAACTCAAATTACAAAATTGTTAGGGCGAGGAATCAAGACGATGAGTCGTGGAAGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGATATGACAACCAAAACACTAATTTCTCGCCCGAAGCTCGACCTTCTCAACTGGGTGACAGGGGCGTTAAGGAGATGTCTGAGGGAGACGAGGATCTGCCCAGAGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCCCGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTACGTTGTTGACGTATTGACGGATGCGCAAGTATACTCGGAGCATGCAGCCAAGGCTGCTATCGACTGTGATGATGTGAAGCTTGCCATCCAGTCCAAAGTTCTTCTAGAGTTGGCTAGAAACCGGAATAAAATTCCATTGCCAAGGTCAATAGGCGGGCCTGGTATCGCGCTCCCACCCGATCAAGATACATTGCTCAGTCCCAACTATCAACTGGCAATCCCGAGGAAGCGACAAGTTGAAGCCATGGAGGAAACAGAGGAGGACGAAGGTGTCGACGCAGTTCCATCCCAAGAACCCAGCACAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCTTTGTCTAAACGTCCAAAAATAACATAG

Protein sequence

ALDPFWALNPSEIGCHYSGHRIRHHDFHALNLGERRRDETRTKSDVWAWKPIFEALGETQITKLLGRGIKTMSRGSGGGGGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT
Homology
[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.4e-58
Identity = 122/181 (67.40%), Postives = 141/181 (77.90%), Query Frame = 0 

Query: 116 EGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAI 175
           EG+ED+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA+K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 176 DCDDVKLAIQSK------------VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 235
           DCDDVKLAIQSK            VLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 236 YQLAIPRKRQVEAMEETEEDEGV--------DAVPSQEPSTEVPQQHTPQRVSFPLSKRP 277
           YQL IP+K      EETE+DE +        +    Q+ ++++P Q TPQRVSFPLS+RP
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy Swiss-Prot
Match: Q16594 (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 0 

Query: 119 EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCD 178
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 179 DVKLAIQSKV------------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 238
           DV+LAIQ +             LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 239 -AIPRKRQVEAMEETEEDEGVDAVPSQEPSTEVPQQHTPQRVS 269
            ++ +K    A   T     V +V S+ PST      TPQ +S
Sbjct: 130 KSLQKKASTSAGRITVPRLSVGSVTSR-PSTPTLGTPTPQTMS 171

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-23
Identity = 68/163 (41.72%), Postives = 96/163 (58.90%), Query Frame = 0 

Query: 119 EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCD 178
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 179 DVKLAIQSKV------------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 238
           DV+LAIQ +             LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 239 -AIPRKRQVEAMEETEEDEGVDAVPSQEPSTEVPQQHTPQRVS 269
            ++ +K    A   T     V +V S  PST      TPQ +S
Sbjct: 130 KSLQKKAPAPAGRITVPRLSVGSV-SSRPSTPTLGTPTPQTMS 171

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy Swiss-Prot
Match: Q17QQ4 (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.7e-23
Identity = 67/163 (41.10%), Postives = 96/163 (58.90%), Query Frame = 0 

Query: 119 EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCD 178
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 179 DVKLAIQSKV------------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 238
           DV+LAIQ +             LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 239 -AIPRKRQVEAMEETEEDEGVDAVPSQEPSTEVPQQHTPQRVS 269
            ++ +K    A   T     V +V S+ PST      TP  +S
Sbjct: 130 KSLQKKASASAGRITVPRLSVGSVTSR-PSTPTLGTPTPPAMS 171

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy Swiss-Prot
Match: Q5BKE0 (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN=Taf9 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.7e-23
Identity = 67/163 (41.10%), Postives = 95/163 (58.28%), Query Frame = 0 

Query: 119 EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCD 178
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 179 DVKLAIQSKV------------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 238
           DV+LAIQ +             LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 239 -AIPRKRQVEAMEETEEDEGVDAVPSQEPSTEVPQQHTPQRVS 269
            ++ +K    A   T     V +V S  PST      TPQ +S
Sbjct: 130 KSLQKKAPTPAGRITVPRLSVGSV-SSRPSTPTLGTPTPQAMS 171

[Close]
BLAST of Cp4.1LG12g09150 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 376 bits (965), Expect = 2.10e-129
Identity = 204/219 (93.15%), Postives = 204/219 (93.15%), Query Frame = 0 

Query: 72  MSRGSGGGGGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 131
           MSRGSGGGGGGGGGGG  YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL
Sbjct: 1   MSRGSGGGGGGGGGGG--YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 60

Query: 132 LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV--- 191
           LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV   
Sbjct: 61  LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFS 120

Query: 192 ---------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 251
                    LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE
Sbjct: 121 FSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 180

Query: 252 TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 278
           TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]
BLAST of Cp4.1LG12g09150 vs. NCBI nr
Match: KAG6575445.1 (Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369 bits (947), Expect = 1.08e-126
Identity = 201/219 (91.78%), Postives = 201/219 (91.78%), Query Frame = 0 

Query: 72  MSRGSGGGGGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 131
           MSRGSGGGGGGGGG    YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL
Sbjct: 1   MSRGSGGGGGGGGG----YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 60

Query: 132 LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV--- 191
           LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV   
Sbjct: 61  LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFS 120

Query: 192 ---------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 251
                    LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE
Sbjct: 121 FSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 180

Query: 252 TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 278
           TEEDEGVDAVPSQE STEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 TEEDEGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 215

[Close]
BLAST of Cp4.1LG12g09150 vs. NCBI nr
Match: KAG7013987.1 (Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363 bits (931), Expect = 2.55e-124
Identity = 197/219 (89.95%), Postives = 197/219 (89.95%), Query Frame = 0 

Query: 72  MSRGSGGGGGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 131
           MSRGSGGGGG        YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL
Sbjct: 1   MSRGSGGGGG--------YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 60

Query: 132 LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV--- 191
           LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV   
Sbjct: 61  LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFS 120

Query: 192 ---------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 251
                    LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE
Sbjct: 121 FSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 180

Query: 252 TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 278
           TEEDEGVDAVPSQE STEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 TEEDEGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 211

[Close]
BLAST of Cp4.1LG12g09150 vs. NCBI nr
Match: XP_022992393.1 (transcription initiation factor TFIID subunit 9 [Cucurbita maxima])

HSP 1 Score: 354 bits (908), Expect = 8.66e-121
Identity = 190/210 (90.48%), Postives = 192/210 (91.43%), Query Frame = 0 

Query: 81  GGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDY 140
           GGGGGGGGGYDNQNTNFSPEAR SQLGDRGVKEMSEGDEDLPRDA+IVKTLLKSMGVEDY
Sbjct: 4   GGGGGGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDY 63

Query: 141 EPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV------------ 200
           EPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV            
Sbjct: 64  EPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREV 123

Query: 201 LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDA 260
           LLELARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIP+KR VEAMEETEEDEGVD 
Sbjct: 124 LLELARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDT 183

Query: 261 VPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 278
           VPSQE STEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 184 VPSQELSTEVPQQHTPQRVSFPLSKRPKIT 213

[Close]
BLAST of Cp4.1LG12g09150 vs. NCBI nr
Match: XP_022144675.1 (transcription initiation factor TFIID subunit 9 [Momordica charantia])

HSP 1 Score: 322 bits (825), Expect = 3.08e-108
Identity = 170/204 (83.33%), Postives = 180/204 (88.24%), Query Frame = 0 

Query: 87  GGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIH 146
           GGGYDNQNTNFSPEARPSQLG+RG KE++EGDEDLPRDA+IVK LLKSMGVEDYEPRVIH
Sbjct: 6   GGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYEPRVIH 65

Query: 147 QFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV------------LLELAR 206
           QFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV            LLELAR
Sbjct: 66  QFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR 125

Query: 207 NRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQEP 266
           NRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIP+K+ VE MEETEE+E VD   SQEP
Sbjct: 126 NRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFASSQEP 185

Query: 267 STEVPQQHTPQRVSFPLSKRPKIT 278
           STEVPQ HTPQRVSFPL+KRPKIT
Sbjct: 186 STEVPQ-HTPQRVSFPLAKRPKIT 208

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 376 bits (965), Expect = 1.02e-129
Identity = 204/219 (93.15%), Postives = 204/219 (93.15%), Query Frame = 0 

Query: 72  MSRGSGGGGGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 131
           MSRGSGGGGGGGGGGG  YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL
Sbjct: 1   MSRGSGGGGGGGGGGG--YDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTL 60

Query: 132 LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV--- 191
           LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV   
Sbjct: 61  LKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFS 120

Query: 192 ---------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 251
                    LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE
Sbjct: 121 FSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEE 180

Query: 252 TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 278
           TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 181 TEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy TrEMBL
Match: A0A6J1JZ27 (transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111488713 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 4.19e-121
Identity = 190/210 (90.48%), Postives = 192/210 (91.43%), Query Frame = 0 

Query: 81  GGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDY 140
           GGGGGGGGGYDNQNTNFSPEAR SQLGDRGVKEMSEGDEDLPRDA+IVKTLLKSMGVEDY
Sbjct: 4   GGGGGGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDY 63

Query: 141 EPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV------------ 200
           EPRVIHQFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV            
Sbjct: 64  EPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREV 123

Query: 201 LLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDA 260
           LLELARNRNKIPLPRSIGGPGIALPPD DTLLSPNYQLAIP+KR VEAMEETEEDEGVD 
Sbjct: 124 LLELARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDT 183

Query: 261 VPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 278
           VPSQE STEVPQQHTPQRVSFPLSKRPKIT
Sbjct: 184 VPSQELSTEVPQQHTPQRVSFPLSKRPKIT 213

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy TrEMBL
Match: A0A6J1CSB1 (transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 GN=LOC111014303 PE=3 SV=1)

HSP 1 Score: 322 bits (825), Expect = 1.49e-108
Identity = 170/204 (83.33%), Postives = 180/204 (88.24%), Query Frame = 0 

Query: 87  GGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIH 146
           GGGYDNQNTNFSPEARPSQLG+RG KE++EGDEDLPRDA+IVK LLKSMGVEDYEPRVIH
Sbjct: 6   GGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYEPRVIH 65

Query: 147 QFLELWYRYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKV------------LLELAR 206
           QFLELWYRYVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKV            LLELAR
Sbjct: 66  QFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR 125

Query: 207 NRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQEP 266
           NRNKIPLPR+IGGPGIALPPD D L+SPNYQLAIP+K+ VE MEETEE+E VD   SQEP
Sbjct: 126 NRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFASSQEP 185

Query: 267 STEVPQQHTPQRVSFPLSKRPKIT 278
           STEVPQ HTPQRVSFPL+KRPKIT
Sbjct: 186 STEVPQ-HTPQRVSFPLAKRPKIT 208

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 286 bits (731), Expect = 2.06e-94
Identity = 154/181 (85.08%), Postives = 161/181 (88.95%), Query Frame = 0 

Query: 112 KEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAA 171
           KEMS+GDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 
Sbjct: 18  KEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG 77

Query: 172 KAAIDCDDVKLAIQSKV------------LLELARNRNKIPLPRSIGGPGIALPPDQDTL 231
           KAAIDCDDVKLAIQSKV            LLELARNRNKIPLPRSIGGPGIALPPDQDTL
Sbjct: 78  KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL 137

Query: 232 LSPNYQLAIPRKRQVEAMEETEEDEGVDAV-PSQEPST-EVPQQHTPQRVSFPLSKRPKI 278
           LSPNYQLAIP+K+ VE MEETEEDEG D V PSQEPS+ EVPQQH PQRVSFPL+KRPK+
Sbjct: 138 LSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKL 197

[Close]
BLAST of Cp4.1LG12g09150 vs. ExPASy TrEMBL
Match: A0A1S3CGN5 (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 282 bits (722), Expect = 2.50e-93
Identity = 152/179 (84.92%), Postives = 159/179 (88.83%), Query Frame = 0 

Query: 114 MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKA 173
           MS+GDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 174 AIDCDDVKLAIQSKV------------LLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 233
           AIDCDDVKLAIQSKV            LLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 234 PNYQLAIPRKRQVEAMEETEEDEGVDAV-PSQEPST-EVPQQHTPQRVSFPLSKRPKIT 278
           PNYQLAIP+K+ VE MEETEEDEG D V PSQEPS+ EVPQQH PQRVSFPL+KRPK+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]
BLAST of Cp4.1LG12g09150 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 225.3 bits (573), Expect = 6.0e-59
Identity = 122/181 (67.40%), Postives = 141/181 (77.90%), Query Frame = 0 

Query: 116 EGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKAAI 175
           EG+ED+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA+K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 176 DCDDVKLAIQSK------------VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 235
           DCDDVKLAIQSK            VLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 236 YQLAIPRKRQVEAMEETEEDEGV--------DAVPSQEPSTEVPQQHTPQRVSFPLSKRP 277
           YQL IP+K      EETE+DE +        +    Q+ ++++P Q TPQRVSFPLS+RP
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g09150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SYH28.4e-5867.40Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ... [more]
Q165941.3e-2341.72Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 ... [more]
Q8VI332.3e-2341.72Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9... [more]
Q17QQ46.7e-2341.10Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE... [more]
Q5BKE08.7e-2341.10Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN... [more]
BLAST of Cp4.1LG12g09150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953465.12.10e-12993.15transcription initiation factor TFIID subunit 9 [Cucurbita moschata][more]
KAG6575445.11.08e-12691.78Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma... [more]
KAG7013987.12.55e-12489.95Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. a... [more]
XP_022992393.18.66e-12190.48transcription initiation factor TFIID subunit 9 [Cucurbita maxima][more]
XP_022144675.13.08e-10883.33transcription initiation factor TFIID subunit 9 [Momordica charantia][more]
BLAST of Cp4.1LG12g09150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GPP81.02e-12993.15transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JZ274.19e-12190.48transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1CSB11.49e-10883.33transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 G... [more]
A0A1S4E4D82.06e-9485.08transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36... [more]
A0A1S3CGN52.50e-9384.92transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36... [more]
BLAST of Cp4.1LG12g09150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G54140.16.0e-5967.40TATA binding protein associated factor 21kDa subunit [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003162Transcription initiation factor TAFII31PFAMPF02291TFIID-31kDacoord: 119..226
e-value: 1.6E-34
score: 118.6
IPR003162Transcription initiation factor TAFII31CDDcd07979TAF9coord: 122..226
e-value: 6.94079E-55
score: 171.261
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 122..188
e-value: 7.5E-30
score: 105.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 122..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 253..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..119
NoneNo IPR availablePANTHERPTHR48068TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTORcoord: 113..263

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g09150.1Cp4.1LG12g09150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043966 histone H3 acetylation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0051123 RNA polymerase II preinitiation complex assembly
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0000124 SAGA complex
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0003713 transcription coactivator activity