Cp4.1LG12g08060 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g08060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Cytochrome c-type biogenesis protein
Location	Cp4.1LG12: 6521676 .. 6524693 (-)
RNA-Seq Expression	Cp4.1LG12g08060
Synteny	Cp4.1LG12g08060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTCACTTTTTCTTGCTTGGGCGCCTTCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAGTCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCGACAGATTAATTACGTCTCTCATCTTCAGCAACGGATTGGCTAGATCTCTCCGTCTCCAGCGTGACCTGAGGTTTAATCTCTCTATCTCTGGCTCTCTCTATTTCTATCCAACCACCGCCTCCTTCATTTTACGGCCGCCGGCGAATCTGTCCCGATCCCAACTTTTCCCCCAATATCCCAAACCGGAATAAACCAAACCGAAACAGATCGCGGTTCAAAAACTAATTTCTCTTTTTCCTGATATCGGTTCCGTTTTCGGCTTAAGAAAACCGAATCGATAGTCGTTATATTCGATCGAATTGGTTTAGTGGCTGCATTTGTTGCCCTAATGGTGGGAAACTGGGGCCTGAGTGAATAACGGTTTCCTTCAAGGTTTCTGTTCCAATCCTCGCTTCCTGAATTGCTAATAGCTTCATGTTGATGAATTGATTTTAATACCTGATACGGTGAGCATGCCAATTTTAGTTATTCTAAATCCTTATTTCCTTCTGTGTATTTAGCTGATGTTATGCTCGAAGGCTCCGAATCTAAGAAAATTGAGAACTGAACCAGTTGGTCAGTTTGAATTCACAATTTTTTTTTTCTTGTTTATATTTCAAAATCTTACAGGATTATTTACTCTACACAAATGAATGATGATGATATTAAAAGTTACAAAATACTATATAAAAGAATGACGAACCCTTGATTTTTTTGGTGGAAATTCCTGCTGTTTAAGCTAAACTCTTGAACTTTTGAGCAACCTTCTTAGCTAAATTCGGTATGAATTTATTTTGCTTTTCATTTGATCGATTCCACAGAATCCATTGAGAATTCTTAGTATTCTATATGAGGAAGAACAATGGGAGGTAGATTCGTAATGTTTACTTTTCCCTCTTTGTAGTTTGATAAGATTGTAACTGGAACTTGATCTGCTTTTTTCTTTTTTTCTGACTTCTCGATGTTAATAAGATTTTCAGCTGTAGAAATTTTGAACTTCTAAACTTGATTTATCTTTAACTTGTATTTCGCATTCAAATAATTTTTTGGTATTTTCTTGCAATTGCAGTGCAGTCTGGTCAGAGCTGAGGCATCACAGTGTCTAAGATGGAGAGTGATGCGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCTGATATTGCGATTCTCCTTAGAAAGGTACCAGTTATTTAGATTGAACTCCATGCTTAACAAGTTAACTTAGCCGGAAAATCAGGGAAATTCTGGGAAAGAATTATAGGGAAGTTCAAGAGTCCTTCTCTCTTGTGCAAAATTGTCCCTTTTTTCCTTTTAAAGAAAGACAATATATATATATTAATGATGAAAAACAGGAAAAGCTCCTCATAAGAGTGCACCATACGGAGATTATAAGAATAATTTAGTCCCATGAGTGAAGAGGAGAGCCCAAGCCCACCGCTAACAAATATTGTTTGCTTTGACCCGTTATGTATCGTGGTCAGCCTCACGGTTTTAAAACGCATCTACTAGGGAGAGGTTTCCACACCCTTGTGAGGAATGCTTTCTTAACGATCCACCCCCTCTTGAGGACCCAACGTCCTTGCTGGCACACCGCCCGGTGGTTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCCCGGGGGTGGTTTCATGATTCTTCTAGAGTTGTTGTTTTGATGCAAGAAATCTTCCTTAGAGTTAGAAGATTCCCTTCAAAATAACTATCTATGCTGGCAGCCCTTTGGAAATTCTTAATGCATATTTTTTGATAAACTCCATTGGATCATGAATGATGGACTAAAAAAGACTGACTCACCAGATCATGAATCTTTGCTACATGATGATTTCTCACAGATTTGTTGAGTTTTCTATCTTCTGTCAGTAATTTATGATCAATATTGTTTTGCATTAAACTTGCTTGATGTTTGGTCGTATTTGTAATATCACCATAGTTGATCCGTGATGAGATTCGGTCGGGGAAATCGGACAAGGAGATCTTTAAAAAGCTCGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTCGACCTCCAAACTGCAGCATTATGGCTATCACCGGTCAGTATATATCAGTAAGAAATTCAAAGATTAAATAAATATTTCTTCCCATTTCATGTAAAATTCTAGTTCTAAACATGTTACCTTGGAATATAGGTGTTAGTGGCTGGTGCTGCTGCTGGAGTATGGGCTTATAGCAAGTACAAGCAGAAGTCTAACGTTCATATCATGGCTTTAAATATAGTCAGGGGCGTTCCATTGACCCCTAGAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCACCTCAGAGAGCCGCTTCTTTATGGTGGAGGAGATGGCGTAGCCAGTGAGGTAACTACTCTCCATTGCTAGCTCGAACAACAGTCCTAAGAATTTCATGAGTATGGCACGGAATTTTGGCTCAAAGACAAGCAACACAAAATGAAGCAATGAAAGCTCCTCATTCAAGACAAACCGTGTCGTAATAATCACCTCGAGAAACATGTTTGGCGGTTTCGTTGAATAATTTTTCATGTCGGTGTCTTGTTTCTTCCCTCATTGCCCATTTTATGTATAAATAGGTATATTTCTTCAGTGATGTTATTGTTCAATTGGTTCAGACATGTGTTATCGATCAAGATTTTAGTAGTTTGAGTCACTCGTTTTATTACATTGAATGCAAAAGAAAGAAAGAAAGTATGTAAATTTCTTGAATTTTGATAATAAATGGCAGCCTTGATTGGGTGCTCCTCTAAGATTCTCGGTAAA

mRNA sequence

TATTTCACTTTTTCTTGCTTGGGCGCCTTCTTCTTTCTCCCGCCGTCCACTCTCCTCTGGTTCTCCTTCGCTCACAGTCGCGAACGACTGACGCCGATTCTCCGACTGAAGTCAGTTCTTCTTCAATCGCAGTCGCCACTCTCACCGGCGAGCACTCGGCAGCGACAGATTAATTACGTCTCTCATCTTCAGCAACGGATTGGCTAGATCTCTCCGTCTCCAGCGTGACCTGAGGTTTAATCTCTCTATCTCTGGCTCTCTCTATTTCTATCCAACCACCGCCTCCTTCATTTTACGGCCGCCGGCGAATCTGTCCCGATCCCAACTTTTCCCCCAATATCCCAAACCGGAATAAACCAAACCGAAACAGATCGCGGTTCAAAAACTAATTTCTCTTTTTCCTGATATCGGTTCCGTTTTCGGCTTAAGAAAACCGAATCGATAGTCGTTATATTCGATCGAATTGGTTTAGTGGCTGCATTTGTTGCCCTAATGGTGGGAAACTGGGGCCTGAGTGAATAACGGTTTCCTTCAAGGTTTCTGTTCCAATCCTCGCTTCCTGAATTGCTAATAGCTTCATGTTGATGAATTGATTTTAATACCTGATACGTGCAGTCTGGTCAGAGCTGAGGCATCACAGTGTCTAAGATGGAGAGTGATGCGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCTGATATTGCGATTCTCCTTAGAAAGTTGATCCGTGATGAGATTCGGTCGGGGAAATCGGACAAGGAGATCTTTAAAAAGCTCGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTCGACCTCCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCTGGAGTATGGGCTTATAGCAAGTACAAGCAGAAGTCTAACGTTCATATCATGGCTTTAAATATAGTCAGGGGCGTTCCATTGACCCCTAGAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCACCTCAGAGAGCCGCTTCTTTATGGTGGAGGAGATGGCGTAGCCAGTGAGGTAACTACTCTCCATTGCTAGCTCGAACAACAGTCCTAAGAATTTCATGAGTATGGCACGGAATTTTGGCTCAAAGACAAGCAACACAAAATGAAGCAATGAAAGCTCCTCATTCAAGACAAACCGTGTCGTAATAATCACCTCGAGAAACATGTTTGGCGGTTTCGTTGAATAATTTTTCATGTCGGTGTCTTGTTTCTTCCCTCATTGCCCATTTTATGTATAAATAGGTATATTTCTTCAGTGATGTTATTGTTCAATTGGTTCAGACATGTGTTATCGATCAAGATTTTAGTAGTTTGAGTCACTCGTTTTATTACATTGAATGCAAAAGAAAGAAAGAAAGTATGTAAATTTCTTGAATTTTGATAATAAATGGCAGCCTTGATTGGGTGCTCCTCTAAGATTCTCGGTAAA

Coding sequence (CDS)

ATGGAGAGTGATGCGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCTGATATTGCGATTCTCCTTAGAAAGTTGATCCGTGATGAGATTCGGTCGGGGAAATCGGACAAGGAGATCTTTAAAAAGCTCGAGAATGATTACGGGGAGACGATCCTTTATACCCCAAAGTTCGACCTCCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCTGGAGTATGGGCTTATAGCAAGTACAAGCAGAAGTCTAACGTTCATATCATGGCTTTAAATATAGTCAGGGGCGTTCCATTGACCCCTAGAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCACCTCAGAGAGCCGCTTCTTTATGGTGGAGGAGATGGCGTAGCCAGTGA

Protein sequence

MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ

Homology

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.4e-64
Identity = 117/145 (80.69%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 8   VKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKL 67
           VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSDKEI+KKL
Sbjct: 7   VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIYKKL 66

Query: 68  ENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPL 127
           + DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY K++Q++NVHIMALN+VRGVPL
Sbjct: 67  QADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALNLVRGVPL 126

Query: 128 TPREKQTMLDLLSPPPPQRAASLWW 153
           TPREK+TMLD+L+PPPP   A+ WW
Sbjct: 127 TPREKETMLDVLTPPPP---ANKWW 148

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.4e-64
Identity = 117/145 (80.69%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 8   VKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFKKL 67
           VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGKSDKEI+KKL
Sbjct: 7   VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSDKEIYKKL 66

Query: 68  ENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRGVPL 127
           + DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY K++Q++NVHIMALN+VRGVPL
Sbjct: 67  QADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALNLVRGVPL 126

Query: 128 TPREKQTMLDLLSPPPPQRAASLWW 153
           TPREK+TMLD+L+PPPP   A+ WW
Sbjct: 127 TPREKETMLDVLTPPPP---ANKWW 148

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-51
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME   +  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+ KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y K++ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPP-PPQRAASLWWRRW 156
           ++RGVPLTP+E+ T+LD+L PP PP +      RRW
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-16
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFK 65
           D +      E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G S+ ++  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 66  KLENDYGETILYTPKFDLQTAALW-LSPVLVAGAAAGVWAYSKYKQKSNVHIMALNIVRG 125
            L   YGE +L  P+F+ QT  LW L P+L+ G    +W   + + +S   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 144

Query: 126 VPLTPREKQTMLDLLS 141
            PLTP E+  +  L+S
Sbjct: 145 PPLTPDEEARLAALMS 154

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 4.2e-14
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSDKEIFK 65
           D V     +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G SD+ +  
Sbjct: 24  DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83

Query: 66  KLENDYGETILYTPKFDLQTAALWLSP--VLVAGAAAGVWAYSKYKQKSNVHIMALNIVR 125
            + + YGE +L  P+ + +T  LW  P  +LVAG    V A  +   +          V 
Sbjct: 84  YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VP 143

Query: 126 GVPLTPREKQTMLDLLSP 142
           G PL+  EK+ +  LL P
Sbjct: 144 GAPLSDEEKERLDRLLRP 151

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 316 bits (809), Expect = 1.32e-108
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 291 bits (746), Expect = 5.34e-99
Identity = 142/158 (89.87%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           MES+ DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI++KLE+DYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAY+K+KQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           +VRGVPLTP+EKQTMLDLL+PPPPQR AS WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 288 bits (736), Expect = 1.61e-97
Identity = 141/154 (91.56%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+D DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLENDYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRR 154
           +VRGVPLTP+EKQTMLDLLSPPP QR +S WWRR
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTSSSWWRR 154

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 288 bits (736), Expect = 1.79e-97
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           K+I+KKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (734), Expect = 3.61e-97
Identity = 141/158 (89.24%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 316 bits (809), Expect = 6.38e-109
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy TrEMBL
Match: A0A6J1GPV4 (Cytochrome c-type biogenesis protein OS=Cucurbita moschata OX=3662 GN=LOC111456378 PE=3 SV=1)

HSP 1 Score: 316 bits (809), Expect = 6.38e-109
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 2.59e-99
Identity = 142/158 (89.87%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           MES+ DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI++KLE+DYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAY+K+KQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           +VRGVPLTP+EKQTMLDLL+PPPPQR AS WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 8.66e-98
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME+D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           K+I+KKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 1.75e-97
Identity = 141/158 (89.24%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME D DA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+KKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSK+KQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158
           +VRGVPLTP+EKQTMLDLLSPPP QR  S WWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Cp4.1LG12g08060 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-52
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME   +  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+ KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y K++ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPP-PPQRAASLWWRRW 156
           ++RGVPLTP+E+ T+LD+L PP PP +      RRW
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Cp4.1LG12g08060 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-52
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60
           ME   +  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GK+D
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120
           KEI+ KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y K++ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 IVRGVPLTPREKQTMLDLLSPP-PPQRAASLWWRRW 156
           ++RGVPLTP+E+ T+LD+L PP PP +      RRW
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g08060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	3.4e-64	80.69	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	3.4e-64	80.69	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	1.9e-51	64.10	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	3.5e-16	35.29	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	4.2e-14	36.23	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of Cp4.1LG12g08060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953979.1	1.32e-108	100.00	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]
XP_022152937.1	5.34e-99	89.87	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_038904619.1	1.61e-97	91.56	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_004149299.1	1.79e-97	88.61	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_008452301.1	3.61e-97	89.24	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]

BLAST of Cp4.1LG12g08060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTI4	6.38e-109	100.00	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]
A0A6J1GPV4	6.38e-109	100.00	Cytochrome c-type biogenesis protein OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A6J1DHL6	2.59e-99	89.87	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L351	8.66e-98	88.61	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A1S4DZT6	1.75e-97	89.24	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]

BLAST of Cp4.1LG12g08060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	1.4e-52	64.10	cytochrome c biogenesis protein family	[more]
AT1G15220.2	1.4e-52	64.10	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 8..135 e-value: 6.4E-30 score: 103.3
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 2..82 e-value: 9.6E-21 score: 75.5
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 1..157
None	No IPR available	CDD	cd16378	CcmH_N	coord: 14..79 e-value: 1.03871E-25 score: 91.051

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g08060.1	Cp4.1LG12g08060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity