Cp4.1LG12g07960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAGTGAGCATAATTCTTAATTTCCTCAAAATTGGAGTTTTTTATTTTTTTATTTTTTATTTACGTATTTTCTTTGTTTTGAACGTTGCAGATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCVESAFQCAICIGKCMISVESSPMQANHMDNRYFCKLGCSTSRCAKLLLNHPNEKQMKGCVNSCSHTCTNIMN Homology
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: KAG6575553.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 229 bits (584), Expect = 7.60e-76 Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: KAG7014099.1 (hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 230 bits (586), Expect = 1.63e-74 Identity = 107/110 (97.27%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: KAG6575558.1 (hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 203 bits (517), Expect = 2.00e-64 Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: XP_008461038.1 (PREDICTED: beta-hordothionin-like [Cucumis melo]) HSP 1 Score: 109 bits (272), Expect = 4.48e-28 Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: KAG6575557.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 84.7 bits (208), Expect = 1.06e-17 Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. ExPASy TrEMBL
Match: A0A1S3CDB8 (beta-hordothionin-like OS=Cucumis melo OX=3656 GN=LOC103499744 PE=4 SV=1) HSP 1 Score: 109 bits (272), Expect = 2.17e-28 Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. ExPASy TrEMBL
Match: A0A6P5X8X4 (thionin-like protein 2 OS=Durio zibethinus OX=66656 GN=LOC111281385 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 6.44e-17 Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. ExPASy TrEMBL
Match: A0A6P8CEJ2 (thionin-like protein 2 OS=Punica granatum OX=22663 GN=LOC116196697 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 2.31e-16 Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. ExPASy TrEMBL
Match: A0A6J1KDK0 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.13e-15 Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. ExPASy TrEMBL
Match: A0A6P5X8W9 (thionin-like protein 2 OS=Durio zibethinus OX=66656 GN=LOC111281382 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.50e-13 Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). ) HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07 Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 0
BLAST of Cp4.1LG12g07960 vs. TAIR 10
Match: AT1G12672.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06 Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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