Cp4.1LG12g06990 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g06990
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L6
Location	Cp4.1LG12: 7275331 .. 7277185 (+)
RNA-Seq Expression	Cp4.1LG12g06990
Synteny	Cp4.1LG12g06990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCTGAAGAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGTTATATATAAATATCATGATTTGTGAATTAGGGTTTCTCTGGCACTAGTCTTCTTTCTGGTTGCGAAGAAGAGCACCGCAGAGATACTGAAATGGCGCCCAAAACCCCTAGAGTTACACGTAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCCAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAATGGCGGAGTGTTCCCTCGTCACGATGTGAAGCTGAAAGCTGATGCCCCAGCTGAGAAGTCGCCGAAGTTTTACCCTGCCGACGATGTGAAGAAGCCCCTTGTCAACAAGCGCAAGGCCAGGCTCACGAAACTGAGGTATGTATTGATTATTTTTCGGTTGAGAACTATATCACTGTGCAGTGTGGTGGGATTTGGTTCTTTGATCCTAACTATACTGTTTAGGGAACGCCTTTTTTAATTCTGGATTTATTCCTGTTTTAGAGCCAGCATTACTCCTGGTACTGTGTTGATAATCCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGTGAGTTCCCTAACTTTTTTCCCTGACTTGGCTAGACCATACAAAAATAGATTAGTGGTTGAATTCTGATGGTTCTTTGCCTTTACATTGTGTTATTTGATTTTGATTGGGAGATAATGTTGTAATTTGCTGCCATCTTTTGGTTTCATTTCTTTCATTCACTGTGTAATTTTAGCGGACTTTCAGCCATGGTATGTGGTTATCTATCCAAGCAAAAACGTTTGACAAAGTATTACTTATTTCTTAGCTGCCAATTTGAATCATTGCGACGAAGTATTAAGTCTACGAGTGTATCTGCTTAGGAATTTCTTGCTGTTCTTTTTCTGATGATTTGGAAGTTGAATCTTTAATGCTGAAGATTGGATTTAACGTTCCATTTTAGCAGTTTATGAGTAGAACACCAACTCAATTAATCTTTTGTTTTCTTATGAAAAATGGGTGTTCTTGTTCAGCAGTTCTTCAACATGTTCTTTATGACTACAGGCCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAGTCGTACGCCATTGCAACCTCCACCAAAGTTGACATCTCTGGAGTTAACGCAGAAAAGTTTGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGGGCGAAGGCGAATTTTTCGAGGCCGAGAAAGAGGTAGGCTGACCCGAATGATACAACCTCATGCCCTTATAATTCTAATTGTTTTAGCCAGCCGGCCTAAGTTTTTTGGTTCCAACTTCTTATTGTAGGAGAAAAGTGCTCTCCCAGCCGACAGGAAGGATGACCAGAAAGCTGTGGATACACCATTGATCAAGTCGATCGAGGGGGTACCGGAGTTGAAGGCTTACTTGGCTGCAAGATTTTCTCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAGATAATGGGTCTGGTTTTTATTTTTTAGATCATCACCTTGTTTTTTGTTCGTCTGAACATGGCTATGACTTGTGATAGTTGCCTTGTCCCAAATTTTGATTCTAAATAGAGATTCCATGTTTGGTTAGCTCTGTTTTATTATTGAATACTGTGTTCAGGTTCTTCAGTCAATCTCATTGATTTAGAGCCACCCGAACTCTGATGCAAAGCCATTCACGATGTGTTTACACTATGAGAAAATATTAAACATGTTTGATATGCGTGGATAGACCAAAAAGTATAAAATACGAAACTTGATGTTCTTGC

mRNA sequence

TTTTTCTGAAGAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGTTATATATAAATATCATGATTTGTGAATTAGGGTTTCTCTGGCACTAGTCTTCTTTCTGGTTGCGAAGAAGAGCACCGCAGAGATACTGAAATGGCGCCCAAAACCCCTAGAGTTACACGTAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCCAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAATGGCGGAGTGTTCCCTCGTCACGATGTGAAGCTGAAAGCTGATGCCCCAGCTGAGAAGTCGCCGAAGTTTTACCCTGCCGACGATGTGAAGAAGCCCCTTGTCAACAAGCGCAAGGCCAGGCTCACGAAACTGAGAGCCAGCATTACTCCTGGTACTGTGTTGATAATCCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGCCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAGTCGTACGCCATTGCAACCTCCACCAAAGTTGACATCTCTGGAGTTAACGCAGAAAAGTTTGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGGGCGAAGGCGAATTTTTCGAGGCCGAGAAAGAGGAGAAAAGTGCTCTCCCAGCCGACAGGAAGGATGACCAGAAAGCTGTGGATACACCATTGATCAAGTCGATCGAGGGGGTACCGGAGTTGAAGGCTTACTTGGCTGCAAGATTTTCTCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAGATAATGGGTCTGGTTTTTATTTTTTAGATCATCACCTTGTTTTTTGTTCGTCTGAACATGGCTATGACTTGTGATAGTTGCCTTGTCCCAAATTTTGATTCTAAATAGAGATTCCATGTTTGGTTAGCTCTGTTTTATTATTGAATACTGTGTTCAGGTTCTTCAGTCAATCTCATTGATTTAGAGCCACCCGAACTCTGATGCAAAGCCATTCACGATGTGTTTACACTATGAGAAAATATTAAACATGTTTGATATGCGTGGATAGACCAAAAAGTATAAAATACGAAACTTGATGTTCTTGC

Coding sequence (CDS)

ATGGCGCCCAAAACCCCTAGAGTTACACGTAACCCGGATCTAATCCGAGGTGTCGGCAAGTACTCCAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAATGGCGGAGTGTTCCCTCGTCACGATGTGAAGCTGAAAGCTGATGCCCCAGCTGAGAAGTCGCCGAAGTTTTACCCTGCCGACGATGTGAAGAAGCCCCTTGTCAACAAGCGCAAGGCCAGGCTCACGAAACTGAGAGCCAGCATTACTCCTGGTACTGTGTTGATAATCCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGCCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAGTCGTACGCCATTGCAACCTCCACCAAAGTTGACATCTCTGGAGTTAACGCAGAAAAGTTTGATGACAAGTATTTCTCCAAGGAAGTCCAGAAGAAGAAGAAGAAGGGCGAAGGCGAATTTTTCGAGGCCGAGAAAGAGGAGAAAAGTGCTCTCCCAGCCGACAGGAAGGATGACCAGAAAGCTGTGGATACACCATTGATCAAGTCGATCGAGGGGGTACCGGAGTTGAAGGCTTACTTGGCTGCAAGATTTTCTCTCAAGGCTGGAATGAAACCTCATGAGCTTGTCTTTTAG

Protein sequence

MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPKFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF

Homology

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BLAST of Cp4.1LG12g06990 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.3e-101
Identity = 188/228 (82.46%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHD K K DAP EK PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

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BLAST of Cp4.1LG12g06990 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 5.1e-101
Identity = 186/230 (80.87%), Postives = 201/230 (87.39%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHD + K DAP EK  K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEE 181
           FKINGVPLRRVNQ+Y I TSTK+DISGVN EKFDDKYF K  +KKKKK EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           K  +P ++K+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

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BLAST of Cp4.1LG12g06990 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-100
Identity = 184/228 (80.70%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPKFY 63
           + P V+RNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  K       EK PKFY
Sbjct: 7   RKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFY 66

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PADDVKKPL+NKRK + TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 67  PADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFK 126

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           +NGVPLRRVNQ+Y IATSTKVDISGVN EKFDDKYF K+ +KK KKGEGEFFEAEK+E +
Sbjct: 127 VNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVN 186

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            LP ++KDDQKAVD  L+K+IEGVPELKAYL ARFSLKAGMKPHELVF
Sbjct: 187 VLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

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BLAST of Cp4.1LG12g06990 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.3e-100
Identity = 186/228 (81.58%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHD K K DAP EK PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Cp4.1LG12g06990 vs. ExPASy Swiss-Prot
Match: Q2YGT9 (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3)

HSP 1 Score: 194.9 bits (494), Expect = 1.0e-48
Identity = 116/248 (46.77%), Postives = 156/248 (62.90%), Query Frame = 0


Query: 6   PRVTRNPDLIRGVGKYSRSKMYHKRGLWAIK--AKNGGVFPRHDVKLKAD---------- 65
           P  +RNP L+RG+G+YSRS MY ++ L+  K  A    V  +  V++ A           
Sbjct: 38  PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 97

Query: 66  -----APAEKSPKFYPADDVKKPLVNKRK----ARLTKLRASITPGTVLIILAGRFKGKR 125
                    K P++YP +DV + L++  K      + KLRASITPGT+LIIL GR +GKR
Sbjct: 98  GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 157

Query: 126 VVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYAIATSTKVDISGVN-AEKFDDKYFSKEV 185
           V+FLKQL SGLLLVTGP  +N VPLRR +Q + IATSTK+DISGV   E   D YF K+ 
Sbjct: 158 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 217

Query: 186 QKKKKKGEGEFFEAEKEEKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAG 232
            +K +  EGE F+ EK EK  +   RK DQKAVD+ +++ I+ VP+L+ YL + F+L  G
Sbjct: 218 LRKPRHQEGEIFDTEK-EKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 277

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BLAST of Cp4.1LG12g06990 vs. NCBI nr
Match: XP_022954334.1 (60S ribosomal protein L6-3-like [Cucurbita moschata])

HSP 1 Score: 444 bits (1142), Expect = 5.79e-157
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD KLKADAPAEKSP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPADRKDDQKAVDTPLIKSI+GVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIDGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. NCBI nr
Match: KAG6575673.1 (60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014224.1 60S ribosomal protein L6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443 bits (1140), Expect = 1.17e-156
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD KLKADAPAE SP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAENSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. NCBI nr
Match: XP_022991926.1 (60S ribosomal protein L6-1-like [Cucurbita maxima])

HSP 1 Score: 442 bits (1138), Expect = 2.36e-156
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD K KADAPAEKSP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. NCBI nr
Match: XP_023548320.1 (uncharacterized protein LOC111806995 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 447 bits (1149), Expect = 1.40e-150
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP
Sbjct: 521 MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 580

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 581 KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 640

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 641 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 700

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 701 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 751

[Close]

BLAST of Cp4.1LG12g06990 vs. NCBI nr
Match: XP_038896966.1 (60S ribosomal protein L6-1-like [Benincasa hispida])

HSP 1 Score: 426 bits (1094), Expect = 1.20e-149
Identity = 218/231 (94.37%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD K KADAP EK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPTEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRK +LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKPKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKVDISGVN+EKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKS LPAD+KDDQ+AVDTPLIKSIE VPELKAYL ARFSLKAGMKPHELVF
Sbjct: 181 EKSGLPADKKDDQRAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. ExPASy TrEMBL
Match: A0A6J1GSP4 (60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE=3 SV=1)

HSP 1 Score: 444 bits (1142), Expect = 2.80e-157
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD KLKADAPAEKSP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKLKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPADRKDDQKAVDTPLIKSI+GVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIDGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. ExPASy TrEMBL
Match: A0A6J1JS55 (60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3 SV=1)

HSP 1 Score: 442 bits (1138), Expect = 1.14e-156
Identity = 229/231 (99.13%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD K KADAPAEKSP
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKADAPAEKSP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF
Sbjct: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. ExPASy TrEMBL
Match: A0A0A0K9V0 (60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1)

HSP 1 Score: 424 bits (1090), Expect = 2.37e-149
Identity = 218/231 (94.37%), Postives = 223/231 (96.54%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD + KA APAEK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKAAAPAEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKA+LTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKAKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKVDISGVN+EKFDDKYFSKE QKKKKKGEGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVDISGVNSEKFDDKYFSKEAQKKKKKGEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPA++KDDQKAVDTPLIKSIE VPELKAYL ARFSLKAGMKPHELVF
Sbjct: 181 EKSALPAEKKDDQKAVDTPLIKSIEAVPELKAYLGARFSLKAGMKPHELVF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. ExPASy TrEMBL
Match: A0A6J1H5C5 (60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1)

HSP 1 Score: 424 bits (1089), Expect = 3.36e-149
Identity = 218/231 (94.37%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD + KADA  EK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKV+ISGVN EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEISGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPAD+KDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELAF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. ExPASy TrEMBL
Match: A0A6J1KWW3 (60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111497875 PE=3 SV=1)

HSP 1 Score: 422 bits (1085), Expect = 1.37e-148
Identity = 217/231 (93.94%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSP 60
           MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHD + KADA  EK P
Sbjct: 1   MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPP 60

Query: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120
           KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG
Sbjct: 61  KFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 120

Query: 121 PFKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKE 180
           PFKINGVPLRRVNQSY IATSTKV+ SGVN EKFDDKYFSKEVQKKKKK EGEFFEAEKE
Sbjct: 121 PFKINGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKE 180

Query: 181 EKSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 231
           EKSALPAD+KDDQKAVDTPLIKSIEGVPELKAYLAARFSLK+GMKPHEL F
Sbjct: 181 EKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 231

[Close]

BLAST of Cp4.1LG12g06990 vs. TAIR 10
Match: AT1G74050.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 369.8 bits (948), Expect = 1.6e-102
Identity = 188/228 (82.46%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHD K K DAP EK PKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of Cp4.1LG12g06990 vs. TAIR 10
Match: AT1G18540.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 368.6 bits (945), Expect = 3.6e-102
Identity = 186/230 (80.87%), Postives = 201/230 (87.39%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHD + K DAP EK  K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEE 181
           FKINGVPLRRVNQ+Y I TSTK+DISGVN EKFDDKYF K  +KKKKK EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
           K  +P ++K+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHELVF
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of Cp4.1LG12g06990 vs. TAIR 10
Match: AT1G74060.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 365.5 bits (937), Expect = 3.1e-101
Identity = 186/228 (81.58%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDVKLKADAPAEKSPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHD K K DAP EK PKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYAIATSTKVDISGVNAEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKS 183
           INGVPLRRVNQ+Y I TSTKVDISGV  +KFDDKYF K  +KKKKK EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADRKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKAGMKPHELVF 232
            +P  +KDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHELVF
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9C5	2.3e-101	82.46	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
Q9FZ76	5.1e-101	80.87	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
P34091	1.1e-100	80.70	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
Q9C9C6	4.3e-100	81.58	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
Q2YGT9	1.0e-48	46.77	60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3	[more]

BLAST of Cp4.1LG12g06990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954334.1	5.79e-157	99.13	60S ribosomal protein L6-3-like [Cucurbita moschata]	[more]
KAG6575673.1	1.17e-156	99.13	60S ribosomal protein L6, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022991926.1	2.36e-156	99.13	60S ribosomal protein L6-1-like [Cucurbita maxima]	[more]
XP_023548320.1	1.40e-150	100.00	uncharacterized protein LOC111806995 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_038896966.1	1.20e-149	94.37	60S ribosomal protein L6-1-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG12g06990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSP4	2.80e-157	99.13	60S ribosomal protein L6-3-like OS=Cucurbita moschata OX=3662 GN=LOC111456610 PE...	[more]
A0A6J1JS55	1.14e-156	99.13	60S ribosomal protein L6-1-like OS=Cucurbita maxima OX=3661 GN=LOC111488421 PE=3...	[more]
A0A0A0K9V0	2.37e-149	94.37	60S ribosomal protein L6 OS=Cucumis sativus OX=3659 GN=Csa_7G428940 PE=3 SV=1	[more]
A0A6J1H5C5	3.36e-149	94.37	60S ribosomal protein L6 OS=Cucurbita moschata OX=3662 GN=LOC111460710 PE=3 SV=1	[more]
A0A6J1KWW3	1.37e-148	93.94	60S ribosomal protein L6 OS=Cucurbita maxima OX=3661 GN=LOC111497875 PE=3 SV=1	[more]

BLAST of Cp4.1LG12g06990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74050.1	1.6e-102	82.46	Ribosomal protein L6 family protein	[more]
AT1G18540.1	3.6e-102	80.87	Ribosomal protein L6 family protein	[more]
AT1G74060.1	3.1e-101	81.58	Ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 5..56 e-value: 3.2E-14 score: 52.9
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 85..169 e-value: 8.6E-17 score: 62.9
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 124..231 e-value: 9.9E-39 score: 132.4
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..195
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 79..231 e-value: 2.12285E-79 score: 233.209
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 85..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06990.1	Cp4.1LG12g06990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome