Cp4.1LG12g06270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g06270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein NIM1-INTERACTING 1
Location	Cp4.1LG12: 7620581 .. 7620994 (+)
RNA-Seq Expression	Cp4.1LG12g06270
Synteny	Cp4.1LG12g06270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCAGAAGCGGCAGCCGCCGCGGGGGACAATCGCCGAGGAGGAGGAGGCGGAGGCGGAGGAGGAGGTGGAGATGGAGACGTTTTATGCTCTGGTGAGAAATTTTAAGGAAATACGTGATCGGTGTAGGAAGGAGGTGGTGAACGGCGAGGGCGGTGAAACGGCGGCGGAGAAAACGAGGAAGAGGATGAAGACGACGGAAACGTCGCAGAATCAGTCGAGTTGGATTTTGAGGTTCGAGAGAGAGGATTTCGATGAGGATTTACAAGTCGGAGGAACGGCTGTGGAGCTTCCGAAGCGTTGTTGTCTTGTTAAAGAAGACACTCCGGTGGCGGCGCCGCCGTCGATGAAGAAGGAAAAGAAAGTGGCAAGTGGAGTTGATTGTTTGGATCTTAATTTGTCACTCTAG

mRNA sequence

ATGGAAAATCAGAAGCGGCAGCCGCCGCGGGGGACAATCGCCGAGGAGGAGGAGGCGGAGGCGGAGGAGGAGGTGGAGATGGAGACGTTTTATGCTCTGGTGAGAAATTTTAAGGAAATACGTGATCGGTGTAGGAAGGAGGTGGTGAACGGCGAGGGCGGTGAAACGGCGGCGGAGAAAACGAGGAAGAGGATGAAGACGACGGAAACGTCGCAGAATCAGTCGAGTTGGATTTTGAGGTTCGAGAGAGAGGATTTCGATGAGGATTTACAAGTCGGAGGAACGGCTGTGGAGCTTCCGAAGCGTTGTTGTCTTGTTAAAGAAGACACTCCGGTGGCGGCGCCGCCGTCGATGAAGAAGGAAAAGAAAGTGGCAAGTGGAGTTGATTGTTTGGATCTTAATTTGTCACTCTAG

Coding sequence (CDS)

ATGGAAAATCAGAAGCGGCAGCCGCCGCGGGGGACAATCGCCGAGGAGGAGGAGGCGGAGGCGGAGGAGGAGGTGGAGATGGAGACGTTTTATGCTCTGGTGAGAAATTTTAAGGAAATACGTGATCGGTGTAGGAAGGAGGTGGTGAACGGCGAGGGCGGTGAAACGGCGGCGGAGAAAACGAGGAAGAGGATGAAGACGACGGAAACGTCGCAGAATCAGTCGAGTTGGATTTTGAGGTTCGAGAGAGAGGATTTCGATGAGGATTTACAAGTCGGAGGAACGGCTGTGGAGCTTCCGAAGCGTTGTTGTCTTGTTAAAGAAGACACTCCGGTGGCGGCGCCGCCGTCGATGAAGAAGGAAAAGAAAGTGGCAAGTGGAGTTGATTGTTTGGATCTTAATTTGTCACTCTAG

Protein sequence

MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEKTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKKEKKVASGVDCLDLNLSL

Homology

[Close]

BLAST of Cp4.1LG12g06270 vs. NCBI nr
Match: XP_023547822.1 (uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266 bits (679), Expect = 1.83e-89
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60
           MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK
Sbjct: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60

Query: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120
           TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK
Sbjct: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120

Query: 121 EKKVASGVDCLDLNLSL 137
           EKKVASGVDCLDLNLSL
Sbjct: 121 EKKVASGVDCLDLNLSL 137

[Close]

BLAST of Cp4.1LG12g06270 vs. NCBI nr
Match: KAG6575739.1 (hypothetical protein SDJN03_26378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228 bits (582), Expect = 9.25e-75
Identity = 122/137 (89.05%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60
           MENQKRQPPR TIAEEEE      VEMETFYALVRNFKEIRDR RKEVVNGEG ETAAEK
Sbjct: 1   MENQKRQPPRETIAEEEE------VEMETFYALVRNFKEIRDRWRKEVVNGEGVETAAEK 60

Query: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120
           TRKRMKTTE+ QNQSSWILRFEREDFD+DLQVGG  VELPKRCCLVKEDTPVAAPPSM K
Sbjct: 61  TRKRMKTTESVQNQSSWILRFEREDFDDDLQVGGAGVELPKRCCLVKEDTPVAAPPSMTK 120

Query: 121 EKKVASGVDCLDLNLSL 137
           EKKVASGVDCLDLNLSL
Sbjct: 121 EKKVASGVDCLDLNLSL 131

[Close]

BLAST of Cp4.1LG12g06270 vs. NCBI nr
Match: XP_022991628.1 (uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991630.1 uncharacterized protein LOC111488189 [Cucurbita maxima])

HSP 1 Score: 225 bits (573), Expect = 2.25e-73
Identity = 123/137 (89.78%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60
           MENQKRQPPR TIAEEEE    EEVEME FYALVRNFKEIRDR RKEVVNGEG ETAAEK
Sbjct: 1   MENQKRQPPRETIAEEEE----EEVEMEKFYALVRNFKEIRDRWRKEVVNGEGDETAAEK 60

Query: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120
           TRKRMKTTET QNQSSWILRFEREDFDEDLQVGG AVELPK CCLVKEDTPVAA P +KK
Sbjct: 61  TRKRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAP-LKK 120

Query: 121 EKKVASGVDCLDLNLSL 137
           EKKVASGVDCLDLNLSL
Sbjct: 121 EKKVASGVDCLDLNLSL 132

[Close]

BLAST of Cp4.1LG12g06270 vs. NCBI nr
Match: XP_038898983.1 (protein NIM1-INTERACTING 1-like [Benincasa hispida])

HSP 1 Score: 125 bits (315), Expect = 4.80e-34
Identity = 84/142 (59.15%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAE- 60
           MEN+K QP    IAEEEE E     EME F+ALVRNFKE+RDR RKE++ GE  E AAE 
Sbjct: 1   MENEKLQPAPERIAEEEEEE-----EMEMFFALVRNFKEMRDRRRKELMIGEEEEIAAEE 60

Query: 61  KTRKRMKTT-ETSQNQSSWILRFEREDFDEDLQVGGTAVELP-KRCCLVKEDTPVAAPPS 120
           K RKRMK+  E  +N+S+WI +FEREDFDE+ QV G    LP K   LVKEDT  AA  +
Sbjct: 61  KRRKRMKSAPEAVENRSTWIPKFEREDFDEEFQVRGQGFILPNKPYNLVKEDTSAAAAST 120

Query: 121 --MKKEKKVASGVDCLDLNLSL 137
             MKK+K V +G DCLDLNL+L
Sbjct: 121 AAMKKKKNVKNGDDCLDLNLAL 137

[Close]

BLAST of Cp4.1LG12g06270 vs. NCBI nr
Match: XP_022151003.1 (protein NIM1-INTERACTING 1 [Momordica charantia])

HSP 1 Score: 110 bits (276), Expect = 2.83e-28
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVN--GEGGETAA 60
           MEN+  +P     AEEEE    EE++ME F+AL+RNFKE+RDR RKE+    G+GGET  
Sbjct: 1   MENENLRP---AAAEEEE----EEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGET-- 60

Query: 61  EKTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAA-PPS 120
           EK RK+MKT       S+WI  F REDFDED QV G    LPK C L+KEDTP    P +
Sbjct: 61  EKKRKKMKTAP-----STWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAA 120

Query: 121 MKKEKKVASGVDCLDLNLSL 137
           + K+K + +  +CLDLNL+L
Sbjct: 121 VAKKKNMKNDEECLDLNLAL 126

[Close]

BLAST of Cp4.1LG12g06270 vs. ExPASy TrEMBL
Match: A0A6J1JVD5 (uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189 PE=3 SV=1)

HSP 1 Score: 225 bits (573), Expect = 1.09e-73
Identity = 123/137 (89.78%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60
           MENQKRQPPR TIAEEEE    EEVEME FYALVRNFKEIRDR RKEVVNGEG ETAAEK
Sbjct: 1   MENQKRQPPRETIAEEEE----EEVEMEKFYALVRNFKEIRDRWRKEVVNGEGDETAAEK 60

Query: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120
           TRKRMKTTET QNQSSWILRFEREDFDEDLQVGG AVELPK CCLVKEDTPVAA P +KK
Sbjct: 61  TRKRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAP-LKK 120

Query: 121 EKKVASGVDCLDLNLSL 137
           EKKVASGVDCLDLNLSL
Sbjct: 121 EKKVASGVDCLDLNLSL 132

[Close]

BLAST of Cp4.1LG12g06270 vs. ExPASy TrEMBL
Match: A0A6J1DAZ5 (protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 SV=1)

HSP 1 Score: 110 bits (276), Expect = 1.37e-28
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVN--GEGGETAA 60
           MEN+  +P     AEEEE    EE++ME F+AL+RNFKE+RDR RKE+    G+GGET  
Sbjct: 1   MENENLRP---AAAEEEE----EEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGET-- 60

Query: 61  EKTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAA-PPS 120
           EK RK+MKT       S+WI  F REDFDED QV G    LPK C L+KEDTP    P +
Sbjct: 61  EKKRKKMKTAP-----STWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAA 120

Query: 121 MKKEKKVASGVDCLDLNLSL 137
           + K+K + +  +CLDLNL+L
Sbjct: 121 VAKKKNMKNDEECLDLNLAL 126

[Close]

BLAST of Cp4.1LG12g06270 vs. ExPASy TrEMBL
Match: A0A6J1H831 (protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 6.77e-25
Identity = 64/122 (52.46%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 18  EAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGE--TAAEKTRKRMKTTETSQNQS 77
           + E EEE++ME F+ALVRNFKE+RD+ RKE++ G  GE   AAE  +++MKT E   N+S
Sbjct: 23  DGEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAAAAEMRKRKMKTVE---NRS 82

Query: 78  SWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKKEKKVASGVDCLDLNL 137
           +WI RFEREDFDE+ QV G A          KE+   AA  + KK+KKV +  D LDLNL
Sbjct: 83  AWIPRFEREDFDEEFQVRGPA----------KEEAAAAAIATAKKKKKVKNEEDILDLNL 131

[Close]

BLAST of Cp4.1LG12g06270 vs. ExPASy TrEMBL
Match: A0A0A0K5V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1)

HSP 1 Score: 100 bits (248), Expect = 3.39e-24
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEV-VNGEGGE---T 60
           MEN K QP   T AE+    + E+ EME F+ALVR+ KE+RD+ RKE+ +  E GE    
Sbjct: 1   MENGKLQPSPDTTAED----SLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIA 60

Query: 61  AAEKTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCC-LVKEDTPVAAP 120
           A EK RKRM+  E  +N+S+WI +FEREDFDE+ Q   T    P  CC LVK DT  A+ 
Sbjct: 61  AGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLP--PNPCCNLVKRDTTAAST 120

Query: 121 PS---MKKEKKVASGVDCLDLNLSL 137
            +   MK +KKV +G   LDLNL+L
Sbjct: 121 TTTAPMKNKKKVKNGDVSLDLNLAL 139

[Close]

BLAST of Cp4.1LG12g06270 vs. ExPASy TrEMBL
Match: A0A5A7UYI4 (Protein NIM1-INTERACTING 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00070 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.63e-22
Identity = 68/143 (47.55%), Postives = 88/143 (61.54%), Query Frame = 0


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60
           MEN+K QP    + E    E  EE EME F+ALVR+FKE+RD+  KE+  GE  E   EK
Sbjct: 1   MENEKMQP----LPERTAEELLEEEEMERFFALVRSFKEMRDQRWKELNMGEEEE---EK 60

Query: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCC-LVKEDTPVAAPPS-- 120
            RKRMK  +  +N+S+WI +FEREDFDE+ Q    A+ LP+ CC L K  T  A   +  
Sbjct: 61  RRKRMKAGKMVENRSTWIPKFEREDFDEEFQ----ALSLPEPCCNLDKRGTRAATTTTTT 120

Query: 121 ---MKKEKKVASGVDCLDLNLSL 137
              MK +K+V +G   LDLNL+L
Sbjct: 121 TAAMKNKKRVKNGEVSLDLNLAL 132

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06270 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g06270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547822.1	1.83e-89	100.00	uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo]	[more]
KAG6575739.1	9.25e-75	89.05	hypothetical protein SDJN03_26378, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022991628.1	2.25e-73	89.78	uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharac...	[more]
XP_038898983.1	4.80e-34	59.15	protein NIM1-INTERACTING 1-like [Benincasa hispida]	[more]
XP_022151003.1	2.83e-28	52.14	protein NIM1-INTERACTING 1 [Momordica charantia]	[more]

BLAST of Cp4.1LG12g06270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVD5	1.09e-73	89.78	uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189...	[more]
A0A6J1DAZ5	1.37e-28	52.14	protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 S...	[more]
A0A6J1H831	6.77e-25	52.46	protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV...	[more]
A0A0A0K5V7	3.39e-24	48.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1	[more]
A0A5A7UYI4	3.63e-22	47.55	Protein NIM1-INTERACTING 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Cp4.1LG12g06270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 20..134 e-value: 7.4E-13 score: 49.1
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 3..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06270.1	Cp4.1LG12g06270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus