Cp4.1LG12g06190 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g06190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Transcription factor UPBEAT1
Location	Cp4.1LG12: 7682846 .. 7683238 (-)
RNA-Seq Expression	Cp4.1LG12g06190
Synteny	Cp4.1LG12g06190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTTTCCCAAACACCCTTTTGCTACTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCAATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGTAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGGACAACAACAATGACAGCGACGACAACGATGGCTCGTTAGAACAGCTATTCACTCACACATCTGATTACATATCGTCGTTGCAAACACGAGTCAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCTTCTTCTTCAAGAATTTGA

mRNA sequence

ATGGGAGCTTTCCCAAACACCCTTTTGCTACTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCAATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGTAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGGACAACAACAATGACAGCGACGACAACGATGGCTCGTTAGAACAGCTATTCACTCACACATCTGATTACATATCGTCGTTGCAAACACGAGTCAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCTTCTTCTTCAAGAATTTGA

Coding sequence (CDS)

ATGGGAGCTTTCCCAAACACCCTTTTGCTACTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCAATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGTAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGGACAACAACAATGACAGCGACGACAACGATGGCTCGTTAGAACAGCTATTCACTCACACATCTGATTACATATCGTCGTTGCAAACACGAGTCAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCTTCTTCTTCAAGAATTTGA

Protein sequence

MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRSRTSKSLAKKTRRSSTRIVQRVTTLRNLVPNMDNNNDSDDNDGSLEQLFTHTSDYISSLQTRVRFMRTLVDVLSGSSSSSSRI

Homology

[Close]

BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (541), Expect = 1.09e-68
Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRSRTSKSLAKKTRR 60
           MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRR RTSKSLAKKTRR
Sbjct: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRRRTSKSLAKKTRR 60

Query: 61  SSTRIVQRVTTLRNLVPNMDNNNDSDDNDGSLEQLFTHTSDYISSLQTRVRFMRTLVDVL 120
           SSTRIVQRVTTLRNLVPNM+N+ND+D+NDGSLEQLFTHT+DYI SLQTRVRFMRTLVDVL
Sbjct: 61  SSTRIVQRVTTLRNLVPNMNNDNDNDNNDGSLEQLFTHTADYILSLQTRVRFMRTLVDVL 120

Query: 121 SGSSS 125
           SGSSS
Sbjct: 121 SGSSS 125

[Close]

BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (300), Expect = 5.05e-32
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNN-----KSCRRRSRTSKSLA 60
           MG +P TLLL+QLNM+EP+QD         ++SMEE+Q+       KS  RR R+S SL 
Sbjct: 1   MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQQEQQEAIAKSFNRRRRSSNSLM 60

Query: 61  KKTR-RSSTRIVQRVTTLRNLVPNMDNNNDSDDND-GSLEQLFTHTSDYISSLQTRVRFM 120
           KK R RSSTRI QRV+TLRNLVPNM+NNN++ ++  GSLEQLFT T+DYI SLQTRVRFM
Sbjct: 61  KKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFM 120

Query: 121 RTLVDVLSGSS 124
           + LVDVLS SS
Sbjct: 121 KNLVDVLSASS 122

[Close]

BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118 bits (295), Expect = 3.35e-31
Identity = 81/136 (59.56%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNN----------KSCRRRSRT 60
           MG +P TLLL+QLNM+EP+QD         ++SMEE+Q+            KS  RR R+
Sbjct: 1   MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQEQQEQQEQQEAIAKSFNRRRRS 60

Query: 61  SKSLAKKTR-RSSTRIVQRVTTLRNLVPNMDNNNDSDDND-GSLEQLFTHTSDYISSLQT 120
           S SL KK R RSSTRI QRV+TLRNLVPNM+NNN++ ++  GSLEQLFT T+DYI SLQT
Sbjct: 61  SNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQT 120

Query: 121 RVRFMRTLVDVLSGSS 124
           RVRFM+ LVDVLS SS
Sbjct: 121 RVRFMKNLVDVLSASS 127

[Close]

BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.32e-17
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 45  RRRSRTSKSLAKKTRR-----SSTRIVQRVTTLRNLVPNMDNNNDSDDND---GSLEQLF 104
           RRRSR++  + KK  R     SS+RI QRV TLR+LVPN DN+N  D ++   GSLEQLF
Sbjct: 75  RRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLF 134

Query: 105 THTSDYISSLQTRVRFMRTLVDVLSGSSSS 126
           T T+DYI SLQTRVR M+TLVDVLS  SSS
Sbjct: 135 TQTADYILSLQTRVRLMKTLVDVLSDPSSS 164

[Close]

BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match: KAA0046707.1 (transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 2.04e-16
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 45  RRRSRTSKSLAKK-TRRSST------RIVQRVTTLRNLVPNMDNNNDSDDN--DGSLEQL 104
           RRRSR++  + KK +RRSS+      RI QRV  LRNLVPN DN+ D D++   GSLEQL
Sbjct: 79  RRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPNNDNHQDDDESCTAGSLEQL 138

Query: 105 FTHTSDYISSLQTRVRFMRTLVDVLSGSSSS 126
           FT T+DYI SLQTRVR M+TLVDVLS  SSS
Sbjct: 139 FTQTADYILSLQTRVRLMKTLVDVLSDPSSS 169

[Close]

BLAST of Cp4.1LG12g06190 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.12e-17
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 45  RRRSRTSKSLAKKTRR-----SSTRIVQRVTTLRNLVPNMDNNNDSDDND---GSLEQLF 104
           RRRSR++  + KK  R     SS+RI QRV TLR+LVPN DN+N  D ++   GSLEQLF
Sbjct: 75  RRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLF 134

Query: 105 THTSDYISSLQTRVRFMRTLVDVLSGSSSS 126
           T T+DYI SLQTRVR M+TLVDVLS  SSS
Sbjct: 135 TQTADYILSLQTRVRLMKTLVDVLSDPSSS 164

[Close]

BLAST of Cp4.1LG12g06190 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.89e-17
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 45  RRRSRTSKSLAKK-TRRSST------RIVQRVTTLRNLVPNMDNNNDSDDN--DGSLEQL 104
           RRRSR++  + KK +RRSS+      RI QRV  LRNLVPN DN+ D D++   GSLEQL
Sbjct: 79  RRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPNNDNHQDDDESCTAGSLEQL 138

Query: 105 FTHTSDYISSLQTRVRFMRTLVDVLSGSSSS 126
           FT T+DYI SLQTRVR M+TLVDVLS  SSS
Sbjct: 139 FTQTADYILSLQTRVRLMKTLVDVLSDPSSS 169

[Close]

BLAST of Cp4.1LG12g06190 vs. ExPASy TrEMBL
Match: A0A445BD20 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g041547 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.82e-05
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 60  RSSTRIVQRVTTLRNLVPNMDNNNDSDDNDGSLEQLFTHTSDYISSLQTRVRFMRTLVDV 119
           +S+  I  RV TL+NL+PN DNN         L+ LF  T++YI SLQ RVR M+ +V V
Sbjct: 63  KSNNGIQSRVRTLKNLIPNSDNNM-------GLDGLFRETANYILSLQNRVRVMQVMVKV 119

Query: 120 LSGS 123
           L+GS
Sbjct: 123 LTGS 119

[Close]

BLAST of Cp4.1LG12g06190 vs. ExPASy TrEMBL
Match: A0A444XT61 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g099168 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.82e-05
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 60  RSSTRIVQRVTTLRNLVPNMDNNNDSDDNDGSLEQLFTHTSDYISSLQTRVRFMRTLVDV 119
           +S+  I  RV TL+NL+PN DNN         L+ LF  T++YI SLQ RVR M+ +V V
Sbjct: 63  KSNNGIQSRVRTLKNLIPNSDNNM-------GLDGLFRETANYILSLQNRVRVMQVMVKV 119

Query: 120 LSGS 123
           L+GS
Sbjct: 123 LTGS 119

[Close]

BLAST of Cp4.1LG12g06190 vs. ExPASy TrEMBL
Match: A0A699LH84 (Transcription factor UPBEAT1 OS=Tanacetum cinerariifolium OX=118510 GN=Tci_712318 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.67e-05
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 45  RRRSRTSKSLAKKTRRSSTRIVQR-VTTLRNLVPNMDNNNDSDDNDGSLEQLFTHTSDYI 104
           RRR+R      +++RR++T I++R V TL+ L+PN D++         L+ LF  T++YI
Sbjct: 4   RRRARRVGQEGRRSRRANTTIIERKVRTLKKLIPNGDSS-------VGLDGLFRETAEYI 63

Query: 105 SSLQTRVRFMRTLVDVLSGS 123
           SSLQ RVR M+ +VD  S S
Sbjct: 64  SSLQMRVRLMQAVVDAFSSS 76

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06190 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g06190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575752.1	1.09e-68	94.40	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025601.1	5.05e-32	61.83	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6593250.1	3.35e-31	59.56	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_031744332.1	2.32e-17	62.22	transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein ...	[more]
KAA0046707.1	2.04e-16	62.64	transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcriptio...	[more]

BLAST of Cp4.1LG12g06190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D9	1.12e-17	62.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1	[more]
A0A5A7TXU1	9.89e-17	62.64	Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A445BD20	1.82e-05	48.44	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g041547 PE=4 SV=1	[more]
A0A444XT61	1.82e-05	48.44	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g099168 PE=4 SV=1	[more]
A0A699LH84	3.67e-05	42.50	Transcription factor UPBEAT1 OS=Tanacetum cinerariifolium OX=118510 GN=Tci_71231...	[more]

BLAST of Cp4.1LG12g06190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 46..118 e-value: 5.9E-5 score: 25.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 45..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..63
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 29..122
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 29..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06190.1	Cp4.1LG12g06190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity