Cp4.1LG12g06150 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g06150
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription initiation factor TFIID subunit 13
Location	Cp4.1LG12: 7801032 .. 7804973 (+)
RNA-Seq Expression	Cp4.1LG12g06150
Synteny	Cp4.1LG12g06150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTTTTGGAATTTATCGGTTGAACACCTTTGGCGGCAGAAGAGTTTAAGCTCCGGCGAATCTCATGCGGTGACTCGGATTCTCCATCCCCGGTGAGAAGCGTGACCCAATCTCAGCAGATTCTAATACTTCTCTTTCTTTTCATCTTTATCGGCGTGTATTTTAACGACAAGTAAATTTACTTCACTCTTCCGAGGCGTTCCACTTTGAAATTCCCCTTTCTGTTTCGAATGTTTGCTTGATATTGTAACTTTTCATTAGGGTTTATCTTTTCTCCCTCGAATTCAGGATGTTGTTCCCTTCGGCTATAATTCCGTATAGTCGGAATTTGTTTTTGGGATTGTTTCAATCTAGTGGCTCGATGGTTATAGATGTTTGATATTGTTTAATTTGATGATTTTATCTTCGCGTTTAGATTATTTTCGCCTTGATTATTGTGGGAAGATCGTGAAGATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGAGCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAACGAGGGGTTTTTCAAAAAGAATGTAACTGGTTTTCCTTTTCTTCCTCTTTGATTTTTCAGCGCAAGTTTGTATGTGAAAATGTAATTATGTGATCCTCTGTTCTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACGCCAATGTAAGTGAAAGTTATCATATATTCATTCTGTTCTAACTTATAAAGAAAGGAGGATTATGTTTGTTTCCATGGAAATTCAAAACCTGAAATTTTCCTTTTGATACTTGTTTGTTGTTGTTTTTTCTGCTTCTCATCTTCCATGGCTGTATATTTTTCGTTGAAATCTTGTGTAGACCTTAGAAAGTGAGTAAATTCTAGTAGATAAAACTTCGATTGTTTAGCTGTAACAGTAGCCCACCGCTAGCCGATGTTGTCCTCTTTGAGTTTTCCCTTCCGGGCTTCCCCTCAAGATTTTAAAACGCGTTTGCTAGGGAGAGGTTTGCACACCCTTATAATGAATGTCTCGTTCTCCTCCCCAACCAATGTGGGATCTCACAATCCACCCCCCTTTAGGCCCAGTGTCCTCGTTGGCACTCGTTCCCTTCTCCAATCGATGTGGGGTCTCACAATCCACCCCCTTCGAGGCCCAGCATCCTCACTGGCACACTGTTCGGTGTCTAGTTCTGATACCATTTGTAATAGTCCAATCCCACCGCTAGTTGATATTGTCCTTTTTGGGTTTTTCCTTCCGAGATTCCACTCAAGGCTTTAAAACGCGTCTGCTATGGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTTCTCAACCGATGTGGGATCTCACAATCCACCCCCTTCAGGGCCCAACGTCCACGCTGGCACTCGTTCCTCTCTCCAATCAACTTGGGATCTCACATTAGCTCTTCTTGGGAGTCTAGGATAGTTGGACAACGATTCTTTGGAGATATTTTCATCATAAGAACAGACACCTCCATGATTCCTGATATGTTAATTTTGAATGCAAGTGACTATCCCATCCCCCCAGAAAGATGCATACCTGCCTGAAGAGAATTGGAAAGAACTAATCAATATTCCATGTATGTTCCAAAATTTCTAAAGCTTTCAATCCCTGAATGACAATAGAGAAATCAGATAACAAGCAAGCCAAAAGAGCTGAACTATGATTTCGAAATCGTGAAGCTACGGTTCTTAATATTCATTAAGAGCTGGTTTTTGTATGCATTACAGCCCCTTCCAGAATCTGTAGCACTTTCTCCTCCTCAACCAATGTGAGATCTCACAATCCACCCCCCTTTAGGCCCAGTGTCCTCGTTGGCACTCATTCCCTTCTCCAATCGATGTGGGGTCTCACAATCCACCCTCTTTAAGGCCCAGCGTCCTCGCTGGCACACTGCTCGGCATCTGGTTCTGATACCATTTGTAATAGTCCAAGCCCACCGCTAGTAGATATTGTCCTTCTTGGGCTTTCCCTTCCGAGATTCCACTCAAGGTTTTAAAACGCGTCTGCTATGGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCTCTTCAGGGCCCAACGTTCTCGCTAGCACTCGTTCCTCTCTCCAATCGACTTAGGATCTCACATTAGCTCTTCTTGGGAGTCTAGGATAGTTGGACGACGATTCTTTGGAGATATTTTCGTCATAGGAACAGACATCTCCATGATTCCTGATATGTTAATTTTTAATGCAAGTTGCTATCCCATCCCCCCAGAAAGATGCATACCTGCCTGAAGAGAATTGGAAAGAACTAATCAATATTCCATGTATGTTCCAAAATTTCTAAAGCTTTCAATCCCTGAATGACAATAGAGAAATCAGATAACAAGCAAGCCAAAAGAGCTGAACTATGATTTCGAAATCCTGAAGCTTTATAATGGCTGTGTTACGGTTCTTAATATTTATTAAGAGCTGGATCAGAAGTACGATGAGAGCAAGGAAAAATTCTGGTCTTTGTGTCCTTATCATACTTCATTTATAAGTAAAATAGCTATTCATGAGTTTTTGTATGCATTACAGCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTAAGAGTTTTTGTGCAATAATTAAGTCTTCCTGGCTAAACCAACGCGGTAGAGTAAGGATTATCTGAATTTTATGTTCTTTTCAGGTGTATAAAGCCCAGGAGATTGGATCCAAAAGGGGAAAACTATCTGTAGAAGACTTTTTGTATCTAATGCGCAAGGTACGTTACATTTTCTGTATGTTTACATATCAATGAATCAACTTTTCTCTCGTCATTTGGCTATGCAACATGGCATCCCTTATGTAAAGACATTGACGTATTAAAATTTTCAAGTGGGGGCTGCTGTTAGTCATTATTTCGACTCTTTCCGTGCATTCTGTAAGCATACGTTTCTTGTGTACCAGCTTCTGTTATAGATCATAGATCATTCCATGTGTGATTTCTGGGGTTTGCTGATTATGTAAAGAGATTAGCTACATTGTTTTGATCTAAAATTAGGTGCTGGCAAATGGTTAACCCTCCATATCGTTCCCTATTGGGTTACATTAATCTCCACCAAAGGGACGGTTTCTCAGAACATGGAGTGTGAATCGAACCTACATTTGAATTGAAAGTTAAGGATAGAAAGTTGATTGTGAAGAAAGTTCATATCCCAGTTCTTTTCTTTCTCGTGGAGGCAATATTTATGAAATATTCCTAGTGTCACTGTTACTCTTGAAATTGTGGCTTCATGGCCTTTTTTTTCTTTTTGTTGGAAAGCTCAAACCCTGCAATCGTTTGAACTTGAGATTTGATGCGAAAACTTGTTAACCCTTATGATTTTGTACGATTTAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTCGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAGAGTTTACAGCAGAAACCAAAGTAATGATAGGAAGATATTTGGGGGTCATCTGTTGCTGCACGGACAAAGTTCATGTCAATATGGTCAACCGACAGGACAGACATTTGAAGCTACCTTTTTCTGCAGCCCAAAGGGTCCATGGTAGACAGGGTAAAGCAAAGCAATTATCTTTAGCCCCAACCTACTTGTAAAGGTGGGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTATCCTACGCACTCCTTTTGGAATTAATGAAATAAACACCTCTTTTCTTTTTAACGTTTCTGGCTTACCTTATCTGTGATTAGTAAGTGTGCTTCTGACTTACCTTATCTGTGATTAGTAAGTGTGCTTCTGAC

mRNA sequence

AGCTTTTTGGAATTTATCGGTTGAACACCTTTGGCGGCAGAAGAGTTTAAGCTCCGGCGAATCTCATGCGGTGACTCGGATTCTCCATCCCCGATTATTTTCGCCTTGATTATTGTGGGAAGATCGTGAAGATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGAGCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAACGAGGGGTTTTTCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTGTATAAAGCCCAGGAGATTGGATCCAAAAGGGGAAAACTATCTGTAGAAGACTTTTTGTATCTAATGCGCAAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTCGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAGAGTTTACAGCAGAAACCAAAGTAATGATAGGAAGATATTTGGGGGTCATCTGTTGCTGCACGGACAAAGTTCATGTCAATATGGTCAACCGACAGGACAGACATTTGAAGCTACCTTTTTCTGCAGCCCAAAGGGTCCATGGTAGACAGGGTAAAGCAAAGCAATTATCTTTAGCCCCAACCTACTTGTAAAGGTGGGGTCTTCCCTTCCCTTCCCTTCCCTTCCCTATCCTACGCACTCCTTTTGGAATTAATGAAATAAACACCTCTTTTCTTTTTAACGTTTCTGGCTTACCTTATCTGTGATTAGTAAGTGTGCTTCTGACTTACCTTATCTGTGATTAGTAAGTGTGCTTCTGAC

Coding sequence (CDS)

ATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGAGCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAACGAGGGGTTTTTCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTGTATAAAGCCCAGGAGATTGGATCCAAAAGGGGAAAACTATCTGTAGAAGACTTTTTGTATCTAATGCGCAAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTCGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAG

Protein sequence

MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

Homology

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy Swiss-Prot
Match: Q6NQH4 (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-37
Identity = 82/123 (66.67%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 2   NNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVV 61
           N P+A +SS  ++ A+  S+   KRK  +FQKELQHMMYGFGD+ NPLPESVAL+EDIVV
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQEKRKT-LFQKELQHMMYGFGDEQNPLPESVALVEDIVV 62

Query: 62  EYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDE 121
           EY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE
Sbjct: 63  EYVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDE 122

Query: 122 DKL 125
            +L
Sbjct: 123 KEL 124

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy Swiss-Prot
Match: Q148M7 (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy Swiss-Prot
Match: Q15543 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy Swiss-Prot
Match: P61216 (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy Swiss-Prot
Match: Q5R9W6 (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of Cp4.1LG12g06150 vs. NCBI nr
Match: XP_023547584.1 (transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >XP_023547585.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255 bits (652), Expect = 2.22e-85
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. NCBI nr
Match: XP_022991537.1 (transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_022991538.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >KAG6575785.1 Transcription initiation factor TFIID subunit 13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014326.1 Transcription initiation factor TFIID subunit 13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254 bits (649), Expect = 6.37e-85
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. NCBI nr
Match: XP_022953440.1 (transcription initiation factor TFIID subunit 13 [Cucurbita moschata] >XP_022953441.1 transcription initiation factor TFIID subunit 13 [Cucurbita moschata])

HSP 1 Score: 253 bits (645), Expect = 2.60e-84
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPS GSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 247 bits (630), Expect = 5.03e-82
Identity = 130/136 (95.59%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLIRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEEDKMDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 246 bits (629), Expect = 7.15e-82
Identity = 130/136 (95.59%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAG SSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEEDKLDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy TrEMBL
Match: A0A6J1JWI2 (transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111488122 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 3.09e-85
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAGSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy TrEMBL
Match: A0A6J1GN10 (transcription initiation factor TFIID subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111455994 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 1.26e-84
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPS GSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV
Sbjct: 1   MNNPSGGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEEDEKVDQ
Sbjct: 121 EDKLKKAFEEDEKVDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 246 bits (629), Expect = 3.46e-82
Identity = 130/136 (95.59%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNNPSAG SSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVDQ 136
           EDKLKKAFEE++K+DQ
Sbjct: 121 EDKLKKAFEEEDKLDQ 136

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 244 bits (622), Expect = 3.91e-81
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNN SAGSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVD 135
           EDKLKKAFEE++K+D
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of Cp4.1LG12g06150 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 244 bits (622), Expect = 3.91e-81
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MNNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIV 60
           MNN SAGSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEDEKVD 135
           EDKLKKAFEE++K+D
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of Cp4.1LG12g06150 vs. TAIR 10
Match: AT1G02680.1 (TBP-associated factor 13 )

HSP 1 Score: 155.2 bits (391), Expect = 3.7e-38
Identity = 82/123 (66.67%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 2   NNPSAGSSSKQRTGASQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVV 61
           N P+A +SS  ++ A+  S+   KRK  +FQKELQHMMYGFGD+ NPLPESVAL+EDIVV
Sbjct: 3   NTPAAAASSSSKSKAAGTSQPQEKRKT-LFQKELQHMMYGFGDEQNPLPESVALVEDIVV 62

Query: 62  EYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDE 121
           EY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE
Sbjct: 63  EYVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDE 122

Query: 122 DKL 125
            +L
Sbjct: 123 KEL 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQH4	5.2e-37	66.67	Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702...	[more]
Q148M7	3.9e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ...	[more]
Q15543	3.9e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1...	[more]
P61216	3.9e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf...	[more]
Q5R9W6	3.9e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1...	[more]

BLAST of Cp4.1LG12g06150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547584.1	2.22e-85	100.00	transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022991537.1	6.37e-85	99.26	transcription initiation factor TFIID subunit 13 [Cucurbita maxima] >XP_02299153...	[more]
XP_022953440.1	2.60e-84	98.53	transcription initiation factor TFIID subunit 13 [Cucurbita moschata] >XP_022953...	[more]
XP_038899215.1	5.03e-82	95.59	transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03...	[more]
XP_022144527.1	7.15e-82	95.59	transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214...	[more]

BLAST of Cp4.1LG12g06150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JWI2	3.09e-85	99.26	transcription initiation factor TFIID subunit 13 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GN10	1.26e-84	98.53	transcription initiation factor TFIID subunit 13 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1CTQ0	3.46e-82	95.59	transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ...	[more]
A0A1S3BRL0	3.91e-81	95.56	transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TZC2	3.91e-81	95.56	Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Cp4.1LG12g06150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02680.1	3.7e-38	66.67	TBP-associated factor 13	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
IPR003195	Transcription initiation factor IID, subunit 13	PFAM	PF02269	TFIID-18kDa	coord: 30..118 e-value: 4.8E-31 score: 106.6
IPR003195	Transcription initiation factor IID, subunit 13	PANTHER	PTHR11380	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	coord: 1..133
IPR003195	Transcription initiation factor IID, subunit 13	CDD	cd07978	TAF13	coord: 28..118 e-value: 1.19397E-41 score: 131.499
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 30..74 e-value: 7.3E-22 score: 78.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 31..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06150.1	Cp4.1LG12g06150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009960	endosperm development
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity