Cp4.1LG12g05610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g05610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	heat shock factor-binding protein 1
Location	Cp4.1LG12: 8060417 .. 8062196 (+)
RNA-Seq Expression	Cp4.1LG12g05610
Synteny	Cp4.1LG12g05610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTTTTTGTGAGTTCATTTTCTTTTCTCTTAGTTCATTCTCTCTGTTTATCCCCATTTGATAGTCAAGCCTACGTTATTTAAAAGGTTGGTGTTATAAAGTTTGTCATTTCCCTTTGACGTATACTCTTGTTCTGTCTAAAATTTGATTCCTAAGGCATTCTTGATTGTTTGTTGCTGGTTTATCGTTAAATTGGTATTTACTCCTCTTCTTTTTTCCAGGTGCAAAATCTTCTTCAACAAATGGTGAGTTTCAGTTAAGTGTAAGTCTCTGGCAGAGAAGTTTATGTCTAACAAAATCTTTTTTATGCAGCAATCTAGGTTCCAAACCATGTCTGACTCCATTATCACAAAGAATATCCTTTCTAAATAATTCTATTTATTTTTAGCATTTCTCTAAAGTCGTAGTTATGATGATTAATTGTTTCCGATACGCTTGGATACATGTTGATTTTTGAGTTTTGCGAAATAACTCGTATATTTATTTATTCGTTTAATAGGCTAGATGGTGCAATTTCTGAGCATTATCATTTTCTTTCACTCTATCAAACAATGATGTGGTGAACGTTATATCAGAATTCGTTTGACTTTAGGTTTTGGAAAAGAAGTAGATTGTAGGATAGCATAGCTTTATTGTAATAACTTATAGTAAATAAGCTTTCCTTAACTTGAGTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTTGAAATAGTTGAGAGTGTATGCTTTATTGTTGAGTTTGATAACTTGCAATATTCTCTTTTTGCTATTGCCTTTGTGAAATTGAAGCCAATGCTTAGGATGAAACAGAAAAGTGCAATATGTTCTAGACTTGTACTTGCTATTTCTGCATGATTTCTTATTGATAATATAGTGATGATTATACTCTATGATGACCTCATACAACAACTACTGCTCATCTCTGGTAACAAAGTAAACACACAACTCGTTAGCTTCGGCAACGAGCAATAGCACTGCAGCCACGGTCGTAGGGGTTAGCCTCAGCACCTGGCTGGCAATTGTAGTAAGATGCTCCTCTGCGTGAGCATGGCACCTTGTTGGCCCTGAGCGCATCGTAGCTTATGTAGTTTACATCGGCCAATATGCGTCTATTGATTTCGGAGTCCATCTGAAATTCAATGTCATCCATCATGCAGTCTGCCATGGAGCCATGACAGGTAGCTAGAGCTCGATCGAGGACCCAACTCGGGCCTTTTGTGGTGGTGGCCAATACTGCAGTGGAGAAGACGATCAGGAATGCAGCGATGAAGCAAAATGGAAGGAGAACAGAAAGCTTGGCCACCATTCTTGCTTTATCTGCTATTCCTGGTATGTCTGTACAACCCCCTTGAATCCTTTATATTGATTTGCAAGCAAGTTGGTTGGAATTGGTCTTCTGATTTTTGTTTATTATTTATATTTGTTTTGTTTTGATCTTTGAAAATTGTCTCATTAATTTGGCTCTGTCCATGAAATGAAATGAGTTGAAAAATAGATTTATTTACACTCTTTATTTTCAAGCATAGACTTATTATGGGTGGAGTAGAGAATAATCTTTATTTTCAGTTTTTATTATTATATTAAAAGTCTAAAGACAGGCTGGAAGCTTTGATTTAA

mRNA sequence

GATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTGCAAAATCTTCTTCAACAAATGCAATCTAGGTTCCAAACCATTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGTGATGATTATACTCTATGATGACCTCATACAACAACTACTGCTCATCTCTGGTAACAAAGTAGCTAGAGCTCGATCGAGGACCCAACTCGGGCCTTTTGTGGTGGTGGCCAATACTGCAGTGGAGAAGACGATCAGGAATGCAGCGATGAAGCAAAATGGAAGGAGAACAGAAAGCTTGGCCACCATTCTTGCTTTATCTGCTATTCCTGACAGGCTGGAAGCTTTGATTTAA

Coding sequence (CDS)

GATGGGCATGACTCTGAAGATCCGAAGCAAAGCACGGCTGATATGACGGTGCAAAATCTTCTTCAACAAATGCAATCTAGGTTCCAAACCATTATACTCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAACGATCTAAAATCTGAGATGGGTGTTGAGGGCTCACCGTCGCCGATGACTCCTTCAAAGTCGAGTGCAGATGAAGTGAAGAAAGATGAAGTGATGATTATACTCTATGATGACCTCATACAACAACTACTGCTCATCTCTGGTAACAAAGTAGCTAGAGCTCGATCGAGGACCCAACTCGGGCCTTTTGTGGTGGTGGCCAATACTGCAGTGGAGAAGACGATCAGGAATGCAGCGATGAAGCAAAATGGAAGGAGAACAGAAAGCTTGGCCACCATTCTTGCTTTATCTGCTATTCCTGACAGGCTGGAAGCTTTGATTTAA

Protein sequence

DGHDSEDPKQSTADMTVQNLLQQMQSRFQTIILDEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEVMIILYDDLIQQLLLISGNKVARARSRTQLGPFVVVANTAVEKTIRNAAMKQNGRRTESLATILALSAIPDRLEALI

Homology

[Close]

BLAST of Cp4.1LG12g05610 vs. ExPASy Swiss-Prot
Match: Q8GW48 (Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMT  VQNLLQQMQ+RFQT+       +D+MG RINELEQSINDL++
Sbjct: 2  DGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSINDLRA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVK 75
          EMGVEG+P    P+  S DE K
Sbjct: 62 EMGVEGTP---PPASKSGDEPK 80

[Close]

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: KAG6575841.1 (Heat shock factor-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (414), Expect = 6.72e-49
Identity = 102/155 (65.81%), Postives = 105/155 (67.74%), Query Frame = 0


Query: 1   DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
           DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2   DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61  EMGVEGSPSPMTPSKSSADEVKKDEVMIILYDDLIQQLLLISGNKVARARSRTQLGPFVV 120
           EMGVEGSPSPMTPSKSSADEVKKDEV                                  
Sbjct: 62  EMGVEGSPSPMTPSKSSADEVKKDEVCH-------------------------------- 121

Query: 121 VANTAVEKTIRNAAMKQNGRRTESLATILALSAIP 147
                VEKT+RNAAMKQNGRR ESLA ILALSAIP
Sbjct: 122 -GAMTVEKTVRNAAMKQNGRRKESLAAILALSAIP 123

[Close]

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: XP_022953166.1 (heat shock factor-binding protein 1-like isoform X1 [Cucurbita moschata] >XP_023547517.1 heat shock factor-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134 bits (336), Expect = 1.64e-37
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDEV 78
          EMGVEGSPSPMTPSKSSADEVKKDEV
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDEV 87

[Close]

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: XP_022953167.1 (heat shock factor-binding protein 1-like isoform X2 [Cucurbita moschata] >XP_023547518.1 heat shock factor-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132 bits (332), Expect = 5.92e-37
Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 77
          EMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: XP_022991818.1 (heat shock factor-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 130 bits (328), Expect = 2.70e-36
Identity = 74/86 (86.05%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDEV 78
          EMGVEGSPSPMTPSKSSADEVKKDEV
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDEV 87

[Close]

BLAST of Cp4.1LG12g05610 vs. NCBI nr
Match: XP_022991819.1 (heat shock factor-binding protein 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 129 bits (324), Expect = 9.71e-36
Identity = 73/85 (85.88%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 77
          EMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]

BLAST of Cp4.1LG12g05610 vs. ExPASy TrEMBL
Match: A0A6J1GM89 (heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455787 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 7.96e-38
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDEV 78
          EMGVEGSPSPMTPSKSSADEVKKDEV
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDEV 87

[Close]

BLAST of Cp4.1LG12g05610 vs. ExPASy TrEMBL
Match: A0A6J1GMG8 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455787 PE=3 SV=1)

HSP 1 Score: 132 bits (332), Expect = 2.86e-37
Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSEDPKQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 77
          EMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]

BLAST of Cp4.1LG12g05610 vs. ExPASy TrEMBL
Match: A0A6J1JXC9 (heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488351 PE=3 SV=1)

HSP 1 Score: 130 bits (328), Expect = 1.31e-36
Identity = 74/86 (86.05%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDEV 78
          EMGVEGSPSPMTPSKSSADEVKKDEV
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDEV 87

[Close]

BLAST of Cp4.1LG12g05610 vs. ExPASy TrEMBL
Match: A0A6J1JVW1 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488351 PE=3 SV=1)

HSP 1 Score: 129 bits (324), Expect = 4.70e-36
Identity = 73/85 (85.88%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMTV--QNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMTV  QNLLQQMQSRFQT+       +DEMGSRINELEQSINDLKS
Sbjct: 2  DGHDSEDTKQSTADMTVFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKS 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 77
          EMGVEGSPSPMTPSKSSADEVKKDE
Sbjct: 62 EMGVEGSPSPMTPSKSSADEVKKDE 86

[Close]

BLAST of Cp4.1LG12g05610 vs. ExPASy TrEMBL
Match: A0A1S3BSN9 (heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3 SV=1)

HSP 1 Score: 122 bits (306), Expect = 2.40e-33
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMT  VQNLLQQMQSRFQT+       +DEMGSRINELEQSINDLK+
Sbjct: 2  DGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLKA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVKKDE 77
          EMGVEGSPSP+ PSKS ADEVKKDE
Sbjct: 62 EMGVEGSPSPLPPSKSVADEVKKDE 86

[Close]

BLAST of Cp4.1LG12g05610 vs. TAIR 10
Match: AT4G15802.1 (heat shock factor binding protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  DGHDSEDPKQSTADMT--VQNLLQQMQSRFQTII------LDEMGSRINELEQSINDLKS 60
          DGHDSED KQSTADMT  VQNLLQQMQ+RFQT+       +D+MG RINELEQSINDL++
Sbjct: 2  DGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSINDLRA 61

Query: 61 EMGVEGSPSPMTPSKSSADEVK 75
          EMGVEG+P    P+  S DE K
Sbjct: 62 EMGVEGTP---PPASKSGDEPK 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g05610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW48	2.8e-18	67.07	Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 S...	[more]

BLAST of Cp4.1LG12g05610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575841.1	6.72e-49	65.81	Heat shock factor-binding protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953166.1	1.64e-37	87.21	heat shock factor-binding protein 1-like isoform X1 [Cucurbita moschata] >XP_023...	[more]
XP_022953167.1	5.92e-37	87.06	heat shock factor-binding protein 1-like isoform X2 [Cucurbita moschata] >XP_023...	[more]
XP_022991818.1	2.70e-36	86.05	heat shock factor-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022991819.1	9.71e-36	85.88	heat shock factor-binding protein 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG12g05610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GM89	7.96e-38	87.21	heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1GMG8	2.86e-37	87.06	heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1JXC9	1.31e-36	86.05	heat shock factor-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1JVW1	4.70e-36	85.88	heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A1S3BSN9	2.40e-33	81.18	heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3...	[more]

BLAST of Cp4.1LG12g05610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15802.1	2.0e-19	67.07	heat shock factor binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..53
None	No IPR available	GENE3D	1.20.5.430		coord: 8..47 e-value: 6.1E-11 score: 44.1
None	No IPR available	PANTHER	PTHR19424:SF8	HEAT SHOCK FACTOR-BINDING PROTEIN 1-LIKE	coord: 1..77
IPR009643	Heat shock factor binding 1	PFAM	PF06825	HSBP1	coord: 16..53 e-value: 4.1E-10 score: 39.4
IPR009643	Heat shock factor binding 1	PANTHER	PTHR19424	HEAT SHOCK FACTOR BINDING PROTEIN 1	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g05610.1	Cp4.1LG12g05610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070370	cellular heat acclimation
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity