Cp4.1LG12g05300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g05300
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	classical arabinogalactan protein 26
Location	Cp4.1LG12: 8202809 .. 8203216 (-)
RNA-Seq Expression	Cp4.1LG12g05300
Synteny	Cp4.1LG12g05300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTTCCTTTCTCCTTCGCTTCTTATCCCAATCACTTCCCTCCCCTCATTTCTTCCATCTCCGCCGCGCCTGAATTTTCGCCCTCCCCTTCTCCGTCCCCGGCGTCGGACATTTCTCCGCTCTTTCCGACCCCCGGCGGTGCCACTCTTCCGCCGTCCTCTTTGCCTACCATCCCCTCTAGTCCCAGCCCTCCGAACCCTGATTTTATGGACGCCGCACCGGCGCCGGAAATGCCTCTTCCACCGTCTCAGTCCTTGCCGTTCTCTGCCACTGCTACTCTCAACTCCGGTGGGTGGTGTTGGTCGATTTGGGTGGCTCTTACGGCGGCTATCGTAGCGGAGGTTTGCCGGTGA

mRNA sequence

ATGGCTTCCATTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTTCCTTTCTCCTTCGCTTCTTATCCCAATCACTTCCCTCCCCTCATTTCTTCCATCTCCGCCGCGCCTGAATTTTCGCCCTCCCCTTCTCCGTCCCCGGCGTCGGACATTTCTCCGCTCTTTCCGACCCCCGGCGGTGCCACTCTTCCGCCGTCCTCTTTGCCTACCATCCCCTCTAGTCCCAGCCCTCCGAACCCTGATTTTATGGACGCCGCACCGGCGCCGGAAATGCCTCTTCCACCGTCTCAGTCCTTGCCGTTCTCTGCCACTGCTACTCTCAACTCCGGTGGGTGGTGTTGGTCGATTTGGGTGGCTCTTACGGCGGCTATCGTAGCGGAGGTTTGCCGGTGA

Coding sequence (CDS)

ATGGCTTCCATTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTTCCTTTCTCCTTCGCTTCTTATCCCAATCACTTCCCTCCCCTCATTTCTTCCATCTCCGCCGCGCCTGAATTTTCGCCCTCCCCTTCTCCGTCCCCGGCGTCGGACATTTCTCCGCTCTTTCCGACCCCCGGCGGTGCCACTCTTCCGCCGTCCTCTTTGCCTACCATCCCCTCTAGTCCCAGCCCTCCGAACCCTGATTTTATGGACGCCGCACCGGCGCCGGAAATGCCTCTTCCACCGTCTCAGTCCTTGCCGTTCTCTGCCACTGCTACTCTCAACTCCGGTGGGTGGTGTTGGTCGATTTGGGTGGCTCTTACGGCGGCTATCGTAGCGGAGGTTTGCCGGTGA

Protein sequence

MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWSIWVALTAAIVAEVCR

Homology

[Close]

BLAST of Cp4.1LG12g05300 vs. ExPASy Swiss-Prot
Match: Q94F57 (Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 35  ISSISAAPEFSP-------SPSPSPASDISPLFPTPGGATLPPSS-----LPTIPSSPSP 94
           +S+ISAAP F P       + +P+ + D SPLFPTPG + + PS      +PTIPSS SP
Sbjct: 25  LSTISAAPSFLPEAPSSFSASTPAMSPDTSPLFPTPGSSEMSPSPSESSIMPTIPSSLSP 84

Query: 95  PNPDFMDAAPAPEM-----PLPPSQSL 105
           PNPD +   P  E+     PLP S S+
Sbjct: 85  PNPDAVTPDPLLEVSPVGSPLPASSSV 111

[Close]

BLAST of Cp4.1LG12g05300 vs. NCBI nr
Match: XP_023548939.1 (classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (646), Expect = 1.70e-84
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60
           MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120
           PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120

Query: 121 IWVALTAAIVAEVCR 135
           IWVALTAAIVAEVCR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Cp4.1LG12g05300 vs. NCBI nr
Match: KAG6575865.1 (hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 249 bits (635), Expect = 8.07e-83
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60
           MASIFSLYIPIFMAYTASI PFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120
           PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSA ATLNSGGWCWS
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 IWVALTAAIVAEVCR 135
           IWVALTAAIVAEVCR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Cp4.1LG12g05300 vs. NCBI nr
Match: XP_022953817.1 (classical arabinogalactan protein 26 [Cucurbita moschata])

HSP 1 Score: 248 bits (632), Expect = 2.32e-82
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60
           MASIFSLYIPIFMAYTASI PFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDI+PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLF 60

Query: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120
           PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSA ATLNSGGWCWS
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 IWVALTAAIVAEVCR 135
           IWVALTAAIVAEVCR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Cp4.1LG12g05300 vs. NCBI nr
Match: XP_022991733.1 (classical arabinogalactan protein 26 [Cucurbita maxima])

HSP 1 Score: 244 bits (624), Expect = 3.84e-81
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60
           MASIFSLYIPIFMAYTASIF FSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120
           PTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPLPPSQSLPFSA ATLNSGGWCWS
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 IWVALTAAIVAEVCR 135
           IWVALTAAIV EVCR
Sbjct: 121 IWVALTAAIVEEVCR 135

[Close]

BLAST of Cp4.1LG12g05300 vs. NCBI nr
Match: XP_038876736.1 (classical arabinogalactan protein 26-like [Benincasa hispida])

HSP 1 Score: 208 bits (529), Expect = 1.25e-66
Identity = 116/137 (84.67%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSP--SPSPSPASDISP 60
           MASIFSLYIPIFMAYTASI PFS ASYPN+ P LISSISAAPEFSP  SPSPSPASDISP
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSLASYPNYSPTLISSISAAPEFSPFPSPSPSPASDISP 60

Query: 61  LFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWC 120
           LFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEM LPPSQSLPFSA  +LN  GWC
Sbjct: 61  LFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMSLPPSQSLPFSAAVSLNFDGWC 120

Query: 121 WSIWVALTAAIVAEVCR 135
           W + VALT A+  E+CR
Sbjct: 121 WPVLVALTTALAVELCR 137

[Close]

BLAST of Cp4.1LG12g05300 vs. ExPASy TrEMBL
Match: A0A6J1GPB2 (classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111456234 PE=4 SV=1)

HSP 1 Score: 248 bits (632), Expect = 1.12e-82
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60
           MASIFSLYIPIFMAYTASI PFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDI+PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLF 60

Query: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120
           PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSA ATLNSGGWCWS
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 IWVALTAAIVAEVCR 135
           IWVALTAAIVAEVCR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Cp4.1LG12g05300 vs. ExPASy TrEMBL
Match: A0A6J1JX46 (classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263 PE=4 SV=1)

HSP 1 Score: 244 bits (624), Expect = 1.86e-81
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60
           MASIFSLYIPIFMAYTASIF FSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120
           PTPGGATLPPSSLPTIPSSPSPPNPDFMDA PAPEMPLPPSQSLPFSA ATLNSGGWCWS
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 IWVALTAAIVAEVCR 135
           IWVALTAAIV EVCR
Sbjct: 121 IWVALTAAIVEEVCR 135

[Close]

BLAST of Cp4.1LG12g05300 vs. ExPASy TrEMBL
Match: A0A0A0K510 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 1.06e-64
Identity = 116/136 (85.29%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPP-LISSISAAPEFSPSPSPSPASDISPL 60
           MASIFSLYIPIFMAYTAS+FPFSFASYPN FP  LISSISAAPEFSPSP+P  ASDISPL
Sbjct: 1   MASIFSLYIPIFMAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAP--ASDISPL 60

Query: 61  FPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCW 120
           FPTPG ATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL PSQSLPFS  A LNSGGWC 
Sbjct: 61  FPTPGDATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSTAAALNSGGWCC 120

Query: 121 SIWVALTAAIVAEVCR 135
           S++VALT  +VAE+ R
Sbjct: 121 SVFVALTTTLVAELRR 134

[Close]

BLAST of Cp4.1LG12g05300 vs. ExPASy TrEMBL
Match: A0A5A7UQZ3 (Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002010 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 1.68e-57
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDI 60
           MASIFSLYIPIFMAYTAS FPF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPS--SDI 60

Query: 61  SPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGG 120
           SPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEMPL P+ S+PFSA A LNS G
Sbjct: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120

Query: 121 WCWSIWVALTAAIVAEVCR 135
           WC S+++AL  A+ AE+ R
Sbjct: 121 WCCSVFLALMTALAAELHR 137

[Close]

BLAST of Cp4.1LG12g05300 vs. ExPASy TrEMBL
Match: A0A1S3BRG9 (classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 1.68e-57
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPP----LISSISAAPEFSPSPSPSPASDI 60
           MASIFSLYIPIFMAYTAS FPF+FASYPN+FP     + SSISAAPEFSP+P+PS  SDI
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPS--SDI 60

Query: 61  SPLFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGG 120
           SPLFPTPG ATLPPSSLPTIPSSPSPPNPDFMD APAPEMPL P+ S+PFSA A LNS G
Sbjct: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120

Query: 121 WCWSIWVALTAAIVAEVCR 135
           WC S+++AL  A+ AE+ R
Sbjct: 121 WCCSVFLALMTALAAELHR 137

[Close]

BLAST of Cp4.1LG12g05300 vs. TAIR 10
Match: AT2G47930.1 (arabinogalactan protein 26 )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 35  ISSISAAPEFSP-------SPSPSPASDISPLFPTPGGATLPPSS-----LPTIPSSPSP 94
           +S+ISAAP F P       + +P+ + D SPLFPTPG + + PS      +PTIPSS SP
Sbjct: 25  LSTISAAPSFLPEAPSSFSASTPAMSPDTSPLFPTPGSSEMSPSPSESSIMPTIPSSLSP 84

Query: 95  PNPDFMDAAPAPEM-----PLPPSQSL 105
           PNPD +   P  E+     PLP S S+
Sbjct: 85  PNPDAVTPDPLLEVSPVGSPLPASSSV 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g05300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F57	2.0e-04	44.83	Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE...	[more]

BLAST of Cp4.1LG12g05300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548939.1	1.70e-84	100.00	classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575865.1	8.07e-83	98.52	hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953817.1	2.32e-82	97.78	classical arabinogalactan protein 26 [Cucurbita moschata]	[more]
XP_022991733.1	3.84e-81	97.04	classical arabinogalactan protein 26 [Cucurbita maxima]	[more]
XP_038876736.1	1.25e-66	84.67	classical arabinogalactan protein 26-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG12g05300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPB2	1.12e-82	97.78	classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC1114562...	[more]
A0A6J1JX46	1.86e-81	97.04	classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263...	[more]
A0A0A0K510	1.06e-64	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1	[more]
A0A5A7UQZ3	1.68e-57	76.26	Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BRG9	1.68e-57	76.26	classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=...	[more]

BLAST of Cp4.1LG12g05300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47930.1	1.4e-05	44.83	arabinogalactan protein 26	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..97
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g05300.1	Cp4.1LG12g05300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane