Cp4.1LG12g03130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g03130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor MYB8-like
Location	Cp4.1LG12: 2026324 .. 2026719 (-)
RNA-Seq Expression	Cp4.1LG12g03130
Synteny	Cp4.1LG12g03130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGCCATACCAAAAGAAGAAGGTGCCCAACCTAATTCCATACCTGAGGGACCTGAAACATCCAAGCCTAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGGCTACCACCACCACTTCTCGATTGGACTGTGACGATGAGGAGAAAAAACTAGAGACCCATAATTCCACTATGAAGGATCCAAAGCTAGAGGAAGAAAATTGGGACCTGGGATCATGTGAATTCACGGCTGATGCTGAGAAACGAGGTAACGGGTTCACAATTGTGGAGAGTGTGGAATGGTGCTACTCTGCTTGGCCTTCATCGATGAATTCCAGCTTTAATAATAATGAATGGCTGAATTGGGAGTGGGAAGATGATGGGGTTTTAGGTTAA

mRNA sequence

ATGAAGAAGGCCATACCAAAAGAAGAAGGTGCCCAACCTAATTCCATACCTGAGGGACCTGAAACATCCAAGCCTAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGGCTACCACCACCACTTCTCGATTGGACTGTGACGATGAGGAGAAAAAACTAGAGACCCATAATTCCACTATGAAGGATCCAAAGCTAGAGGAAGAAAATTGGGACCTGGGATCATGTGAATTCACGGCTGATGCTGAGAAACGAGGTAACGGGTTCACAATTGTGGAGAGTGTGGAATGGTGCTACTCTGCTTGGCCTTCATCGATGAATTCCAGCTTTAATAATAATGAATGGCTGAATTGGGAGTGGGAAGATGATGGGGTTTTAGGTTAA

Coding sequence (CDS)

ATGAAGAAGGCCATACCAAAAGAAGAAGGTGCCCAACCTAATTCCATACCTGAGGGACCTGAAACATCCAAGCCTAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAGGCTACCACCACCACTTCTCGATTGGACTGTGACGATGAGGAGAAAAAACTAGAGACCCATAATTCCACTATGAAGGATCCAAAGCTAGAGGAAGAAAATTGGGACCTGGGATCATGTGAATTCACGGCTGATGCTGAGAAACGAGGTAACGGGTTCACAATTGTGGAGAGTGTGGAATGGTGCTACTCTGCTTGGCCTTCATCGATGAATTCCAGCTTTAATAATAATGAATGGCTGAATTGGGAGTGGGAAGATGATGGGGTTTTAGGTTAA

Protein sequence

MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLETHNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWLNWEWEDDGVLG

Homology

[Close]

BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match: XP_023548704.1 (transcription factor MYB8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (667), Expect = 1.23e-85
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 60
           MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET
Sbjct: 152 MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 211

Query: 61  HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 120
           HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL
Sbjct: 212 HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 271

Query: 121 NWEWEDDGVLG 131
           NWEWEDDGVLG
Sbjct: 272 NWEWEDDGVLG 282

[Close]

BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match: KAG6575096.1 (Transcription factor MYB12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246 bits (629), Expect = 6.84e-80
Identity = 125/131 (95.42%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 60
           MKKAIPKEEG+QPNSIPEGPETSKPNQEEEEEEEEEE   QATTTTS LDCDDEEKKLET
Sbjct: 153 MKKAIPKEEGSQPNSIPEGPETSKPNQEEEEEEEEEE---QATTTTSGLDCDDEEKKLET 212

Query: 61  HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 120
           HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYS WPSSMNSSFNNNEWL
Sbjct: 213 HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSDWPSSMNSSFNNNEWL 272

Query: 121 NWEWEDDGVLG 131
           NWEWEDDGVLG
Sbjct: 273 NWEWEDDGVLG 280

[Close]

BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match: XP_022959319.1 (transcription factor MYB8-like [Cucurbita moschata])

HSP 1 Score: 244 bits (622), Expect = 7.42e-79
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 60
           MKKA+P+EEG+QPNSIPEGPETSKPNQEEEEEEEE     QATTTTS LDCDDEEKKLET
Sbjct: 153 MKKAMPREEGSQPNSIPEGPETSKPNQEEEEEEEE-----QATTTTSGLDCDDEEKKLET 212

Query: 61  HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 120
           HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL
Sbjct: 213 HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 272

Query: 121 NWEWEDDGVLG 131
           NWEWEDDGVLG
Sbjct: 273 NWEWEDDGVLG 278

[Close]

BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match: XP_023006408.1 (transcription repressor MYB6-like [Cucurbita maxima])

HSP 1 Score: 238 bits (608), Expect = 8.73e-77
Identity = 119/131 (90.84%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 60
           MKKAIPKEEG+QPNSIPEGPETSKP+QEEEEEEE+        TTTSRLDCDDEEKKLE+
Sbjct: 151 MKKAIPKEEGSQPNSIPEGPETSKPSQEEEEEEEQ-------ATTTSRLDCDDEEKKLES 210

Query: 61  HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 120
           HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL
Sbjct: 211 HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 270

Query: 121 NWEWEDDGVLG 131
           NWEWEDDGVLG
Sbjct: 271 NWEWEDDGVLG 274

[Close]

BLAST of Cp4.1LG12g03130 vs. NCBI nr
Match: KAG7013669.1 (AMSH-like ubiquitin thioesterase 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (622), Expect = 4.17e-74
Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 60
           MKKAIPKEEG+QPNSIPEGPETSKPNQEEEEEEEE E   QATTTTS LDCDDEEKKLET
Sbjct: 588 MKKAIPKEEGSQPNSIPEGPETSKPNQEEEEEEEEGE---QATTTTSGLDCDDEEKKLET 647

Query: 61  HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 120
           HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYS WPSSMNSSFNNNEWL
Sbjct: 648 HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSDWPSSMNSSFNNNEWL 707

Query: 121 NWEWEDDGVLG 131
           NWEWEDDGVLG
Sbjct: 708 NWEWEDDGVLG 715

[Close]

BLAST of Cp4.1LG12g03130 vs. ExPASy TrEMBL
Match: A0A6J1H7Q3 (transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111460330 PE=4 SV=1)

HSP 1 Score: 244 bits (622), Expect = 3.59e-79
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 60
           MKKA+P+EEG+QPNSIPEGPETSKPNQEEEEEEEE     QATTTTS LDCDDEEKKLET
Sbjct: 153 MKKAMPREEGSQPNSIPEGPETSKPNQEEEEEEEE-----QATTTTSGLDCDDEEKKLET 212

Query: 61  HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 120
           HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL
Sbjct: 213 HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 272

Query: 121 NWEWEDDGVLG 131
           NWEWEDDGVLG
Sbjct: 273 NWEWEDDGVLG 278

[Close]

BLAST of Cp4.1LG12g03130 vs. ExPASy TrEMBL
Match: A0A6J1L4U4 (transcription repressor MYB6-like OS=Cucurbita maxima OX=3661 GN=LOC111499144 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 4.23e-77
Identity = 119/131 (90.84%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MKKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTSRLDCDDEEKKLET 60
           MKKAIPKEEG+QPNSIPEGPETSKP+QEEEEEEE+        TTTSRLDCDDEEKKLE+
Sbjct: 151 MKKAIPKEEGSQPNSIPEGPETSKPSQEEEEEEEQ-------ATTTSRLDCDDEEKKLES 210

Query: 61  HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 120
           HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL
Sbjct: 211 HNSTMKDPKLEEENWDLGSCEFTADAEKRGNGFTIVESVEWCYSAWPSSMNSSFNNNEWL 270

Query: 121 NWEWEDDGVLG 131
           NWEWEDDGVLG
Sbjct: 271 NWEWEDDGVLG 274

[Close]

BLAST of Cp4.1LG12g03130 vs. ExPASy TrEMBL
Match: A0A1S3C7U9 (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103497807 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.93e-22
Identity = 64/135 (47.41%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 2   KKAIPKEEGAQPNSIPEGPETSKPNQEEEEEEEEEEEEEQATTTTS---RLDCDDEEKKL 61
           KK IP EE  Q NSIPE    +KP ++EE           ATT++S     + +D   K 
Sbjct: 150 KKTIPNEESCQSNSIPETTNNNKPKEQEE----------HATTSSSSEKEPNRNDHNNKK 209

Query: 62  ETHNSTMKDPKLEEENWDLGSCEFTADAEKRGNGF--TIVESVEWCYSAWPSSMNSSFNN 121
           + +NST KDPK+EEE+W+      T D EK  N    TI+ES EW YS+WPSS   +FNN
Sbjct: 210 KNNNSTTKDPKIEEEHWEFT----TDDGEKVENEVISTIIESGEWFYSSWPSS---NFNN 266

Query: 122 NEWLNWEWEDDGVLG 131
            EW+NW+WE DGVLG
Sbjct: 270 -EWMNWDWESDGVLG 266

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g03130 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g03130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548704.1	1.23e-85	100.00	transcription factor MYB8-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575096.1	6.84e-80	95.42	Transcription factor MYB12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022959319.1	7.42e-79	93.13	transcription factor MYB8-like [Cucurbita moschata]	[more]
XP_023006408.1	8.73e-77	90.84	transcription repressor MYB6-like [Cucurbita maxima]	[more]
KAG7013669.1	4.17e-74	94.66	AMSH-like ubiquitin thioesterase 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG12g03130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7Q3	3.59e-79	93.13	transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111460330 PE=...	[more]
A0A6J1L4U4	4.23e-77	90.84	transcription repressor MYB6-like OS=Cucurbita maxima OX=3661 GN=LOC111499144 PE...	[more]
A0A1S3C7U9	6.93e-22	47.41	myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103497807 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g03130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g03130.1	Cp4.1LG12g03130.1	mRNA