Cp4.1LG12g03050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g03050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L29
Location	Cp4.1LG12: 2070022 .. 2072637 (+)
RNA-Seq Expression	Cp4.1LG12g03050
Synteny	Cp4.1LG12g03050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGTTCAGCCGCCCACAACATTGAAATAGGTCAACACGATTACTCAAGGCAAAGGAAACTCAGGAAATCACTGCATTTTCGGCCACCGCGGAGTCTAGGGTTTGTTCAAATCCTCTCGTTTCTATCAAATTCTTCTGTAACGAAGATCGGCATAGCATCAGTTTCCTGATTTCACTCTCGTGTTATTTTTGTTCAGAGATGGCGAAGTCGAAGAATCACACAGCGCATAATCAGTCCCGCAAAGCACATAGGAACGGCATCAAGAAACCGAGGAAGCATCGCTACACTTCCACCAAAGGAGTATGAGATTTACTGATGGAATCATTTCTGTTCTTGTTCAATCGATGTTTTTCTTTATAGAATTACTGATGGAATCATTTCTGTTGTTGTTCAATAGATGGATCCGAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGGTACTGAAGAAGAGTAAAATAGAACGCCATGCAGTTGAGTTTTTGGTTTGCTTCGATTGAACCTTTTTGATATTGTTATTTATTCTCTTTTTGGTTATCACCAGTGTAGGAACTTTCACTTTAATGTAGCGAGTCCTGTTTCTTTCAATGTTCGATTACCTGTTCTTTGCGTTTTCAAATTTTTAGTGATTGATTATGTCTTCGTACTTGTTTGTGCTATTGGCATTCTCTTCCATAACAATTTACGCTGTTCTTAATTAAAATTATAAACACTATTTCTAGTTGATTTCTATACGGATCGATTTCTTTATTTTGTTATATTTCCAAAAAGGTGGAAGCCAAAGTTTTGAATACTAAAAAAACAAGAACAACTTAGTTAAGAATTCAAGATATTAGGTAGAAAATAACCTTAAAATCAACCGAAAAAAATGTTCTTCAAAATCATTTCCAGAGGGCGCTTTAATTTAATCTAATAATAGATCATTTTTAATTCAAAAATGAAAAATCAGAAAAATGGAGGTTGTGACATTTACTCTCAGCACGACAGAAAAGATAATAGTTGAGGGATTTCTCTCATAAACTCTAGTAGCTAATGGTTTATTATTATATGAAAAACCATAGGTTATCAGTGAAATTTTGAATGGTATGTGGTTTAAACTATGATATAGTGTTTTTAATTGGATTCAAATCATTTGTGTGAAATATAAGATTATATGTGGCTCGATTTTAATGCATAAGATGTACCAAACAAATATTTTTGAAGAATGCGACTTTCAATCTGTGCTCTTCTCCATAAGCTTGAGCTAAAGTGTTTTGTTCGAGATGGAAGATTAACAAGTTTCGAAGATGAAAGATTTACAAATCTCCTAAAATCCAATGTTTGCAAATTGATTGAAATGTTTTTTCTTTAAACTCAATATATAGATCAATTTTATATTTGAAACGTCATTTGTTAAACACTCACGAATTAATATCTACTAATATATATGTTCGAATTAATATCTACTAATATATATGTTGGATAAAAGTAATTTAGGGAATGTTCATAGGTTTATAATAAAAAAATACTATCTCCATTGGTGTGAGACTGAATGTTCATTTTTTTCATTTTTTTTACAATGTTTTATGACCATTTCCATAAAATCTAAACATTTTTTTGGACAATTTAAAATATTAATTTCTTTGGGCCCATTTAACACATCTCGTTTCCCTGTAGGAGCTATTGGCCCAAAACCAGGCCCATTATAATTTGGAGGCAAGCCCAATTTGAGCTGCCCATAACACTAAATTAGGGCAACACGATTAACTGAGCGACGGAAGCCATAGCATTTGCCGCTACCACAGATTAAGGTTTGTTCAAATTCTCTCTTTCTATCGATTTCTGGGCATATCAGTTTTCTGATTTCACCTTCTTTTTCGTTCAGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAGTATGAGATTTACTGATGGAATCATTTCTGTTCTTGTTCAATCGATTGTTTTGCTTTATAGGATGCTTCTGCAGAATAGTTTTAATTCTTTATCTCGTTGATCTGTGTTTAGATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGGCAGTGAGGAAGAGTAAAGTAGAACGCCATGAAGCCGGCAAGTTTAGGGTTTTTATGATATAAGTTTGCTTCTATTGAATCTTTTGTTTTTGCTCTTCTTTTGTTCACTAGTCTTGTAATTCTGACCTGGTTGTAGCGAATTCCATTTCAATGTGGAAAGCGCTGCTTCTGATGCCTGATTACGACAATTCATTATCAGATTTGCATTTCTAAGGCTACATCTTCATACATAATCAATTTGTGCCATCGACATTATCTTCTTTCTGGGTTTACTGATTTCTATTATCTTATGCTGTCAATCTTGCTGGAAAGCATTTGACTTGTAGATTTAGATTACTGGGCCTCAATCCCTGCCTCTGTTCATTAAAAACCAGCTTCACAAATTTAGACATGAAATCTCTTATGATTCAATGCCATTAGAGCTGTCTTTTATGATTGAATGTT

mRNA sequence

CATGTTCAGCCGCCCACAACATTGAAATAGGTCAACACGATTACTCAAGGCAAAGGAAACTCAGGAAATCACTGCATTTTCGGCCACCGCGGAGTCTAGGAGATGGCGAAGTCGAAGAATCACACAGCGCATAATCAGTCCCGCAAAGCACATAGGAACGGCATCAAGAAACCGAGGAAGCATCGCTACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGGCAGTGAGGAAGAGTAAAGTAGAACGCCATGAAGCCGGCAAGTTTAGGGTTTTTATGATATAAGTTTGCTTCTATTGAATCTTTTGTTTTTGCTCTTCTTTTGTTCACTAGTCTTGTAATTCTGACCTGGTTGTAGCGAATTCCATTTCAATGTGGAAAGCGCTGCTTCTGATGCCTGATTACGACAATTCATTATCAGATTTGCATTTCTAAGGCTACATCTTCATACATAATCAATTTGTGCCATCGACATTATCTTCTTTCTGGGTTTACTGATTTCTATTATCTTATGCTGTCAATCTTGCTGGAAAGCATTTGACTTGTAGATTTAGATTACTGGGCCTCAATCCCTGCCTCTGTTCATTAAAAACCAGCTTCACAAATTTAGACATGAAATCTCTTATGATTCAATGCCATTAGAGCTGTCTTTTATGATTGAATGTT

Coding sequence (CDS)

ATGGCGAAGTCGAAGAATCACACAGCGCATAATCAGTCCCGCAAAGCACATAGGAACGGCATCAAGAAACCGAGGAAGCATCGCTACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGGCAGTGAGGAAGAGTAA

Protein sequence

MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

Homology

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy Swiss-Prot
Match: Q9M7X7 (60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-20
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S E
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 118 E 119
           E
Sbjct: 61  E 61

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy Swiss-Prot
Match: Q84WM0 (60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 6.6e-20
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE    E
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 118 E 119
           E
Sbjct: 61  E 61

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy Swiss-Prot
Match: Q8HXB8 (60S ribosomal protein L29 OS=Macaca fascicularis OX=9541 GN=RPL29 PE=2 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAK 60
          MAKSKNHT HNQSRK HRNGIKKPR  RY S KG+DPKFLRN R+AKKHN K     + K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG----LRK 60

Query: 61 SKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR 99
           + + A   S +A     + KP++ +    KG+  K  R
Sbjct: 61 MQTNNAKAMSARAEAVKALVKPKEVKPKIPKGVSRKLDR 95

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy Swiss-Prot
Match: P47914 (60S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-14
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAK 60
          MAKSKNHT HNQSRK HRNGIKKPR  RY S KG+DPKFLRN R+AKKHN K     + K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG----LKK 60

Query: 61 SKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR 99
           + + A   S +A     + KP++ +    KG+  K  R
Sbjct: 61 MQANNAKAMSARAEAIKALVKPKEVKPKIPKGVSRKLDR 95

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy Swiss-Prot
Match: Q95281 (60S ribosomal protein L29 OS=Sus scrofa OX=9823 GN=RPL29 PE=1 SV=4)

HSP 1 Score: 78.2 bits (191), Expect = 7.0e-14
Identity = 52/99 (52.53%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAK 60
          MAKSKNHT HNQSRK HRNGIKKPR  RY S KG+DPKFLRN R+AKKHN K     + K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKG----LKK 60

Query: 61 SKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR 99
           + + A   S +A     + KP++ +    KG   K  R
Sbjct: 61 MQANNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSR 95

[Close]

BLAST of Cp4.1LG12g03050 vs. NCBI nr
Match: KAG7013674.1 (60S ribosomal protein L29-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (582), Expect = 2.77e-75
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAK 60
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAK
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAK 60

Query: 61  SKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE 118
           SKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
Sbjct: 61  SKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE 118

[Close]

BLAST of Cp4.1LG12g03050 vs. NCBI nr
Match: KAF3599276.1 (hypothetical protein F2Q69_00039071 [Brassica cretica])

HSP 1 Score: 127 bits (319), Expect = 1.28e-34
Identity = 85/164 (51.83%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMD---------PKF------------ 60
           MAKSKNHTAHNQS KAH+NGIKKPR+HR+T T+G            KF            
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGRSFRGCVNGEKDKFPAVEDENGGRVS 60

Query: 61  LRNQR-----------------YAKKHNNKSGET--------EMAKSKNHTAHNQSRKAH 118
           LR +R                  A   N     +        EMAKSKNHTAHNQS KAH
Sbjct: 61  LRRKRDDGAWSVDRIGDKGTLRLASVGNPSRSSSLVSLPFYSEMAKSKNHTAHNQSAKAH 120

[Close]

BLAST of Cp4.1LG12g03050 vs. NCBI nr
Match: XP_022959482.1 (60S ribosomal protein L29-1-like [Cucurbita moschata] >XP_022959483.1 60S ribosomal protein L29-1-like [Cucurbita moschata] >XP_023006357.1 60S ribosomal protein L29-1-like [Cucurbita maxima] >XP_023006358.1 60S ribosomal protein L29-1-like [Cucurbita maxima] >XP_023549485.1 60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119 bits (299), Expect = 7.01e-33
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. NCBI nr
Match: XP_023000055.1 (60S ribosomal protein L29-1 [Cucurbita maxima] >XP_023514069.1 60S ribosomal protein L29-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (293), Expect = 5.75e-32
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGET SEE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETASEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. NCBI nr
Match: XP_023000056.1 (60S ribosomal protein L29-1-like [Cucurbita maxima] >KAG7026347.1 60S ribosomal protein L29-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117 bits (292), Expect = 8.17e-32
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy TrEMBL
Match: A0A6J1L4P4 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499112 PE=3 SV=1)

HSP 1 Score: 119 bits (299), Expect = 3.40e-33
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy TrEMBL
Match: A0A6J1H4N3 (60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111460442 PE=3 SV=1)

HSP 1 Score: 119 bits (299), Expect = 3.40e-33
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy TrEMBL
Match: A0A6J1KHA4 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494362 PE=3 SV=1)

HSP 1 Score: 117 bits (293), Expect = 2.78e-32
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGET SEE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETASEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy TrEMBL
Match: A0A6J1KET9 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 3.95e-32
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGESGTEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. ExPASy TrEMBL
Match: A0A6J1L1Y3 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499113 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 7.97e-32
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQSRKAHRNGIKKPRKHR+TSTKGMDPKFLRNQRYAKKHNNKSGETG+EE
Sbjct: 1   MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETGTEE 60

[Close]

BLAST of Cp4.1LG12g03050 vs. TAIR 10
Match: AT3G06680.1 (Ribosomal L29e protein family )

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-22
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 56  TEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGS 115
           TEMAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE   
Sbjct: 21  TEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAG 80

Query: 116 EEE 119
            EE
Sbjct: 81  VEE 83

[Close]

BLAST of Cp4.1LG12g03050 vs. TAIR 10
Match: AT3G06700.1 (Ribosomal L29e protein family )

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S E
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 118 E 119
           E
Sbjct: 61  E 61

[Close]

BLAST of Cp4.1LG12g03050 vs. TAIR 10
Match: AT3G06700.2 (Ribosomal L29e protein family )

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S E
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 118 E 119
           E
Sbjct: 61  E 61

[Close]

BLAST of Cp4.1LG12g03050 vs. TAIR 10
Match: AT3G06700.3 (Ribosomal L29e protein family )

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S E
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 118 E 119
           E
Sbjct: 61  E 61

[Close]

BLAST of Cp4.1LG12g03050 vs. TAIR 10
Match: AT3G06680.2 (Ribosomal L29e protein family )

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-21
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 58  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEE 117
           MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE    E
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 118 E 119
           E
Sbjct: 61  E 61

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g03050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M7X7	3.8e-20	81.97	60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1	[more]
Q84WM0	6.6e-20	81.97	60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2	[more]
Q8HXB8	3.2e-14	52.53	60S ribosomal protein L29 OS=Macaca fascicularis OX=9541 GN=RPL29 PE=2 SV=3	[more]
P47914	5.4e-14	52.53	60S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2	[more]
Q95281	7.0e-14	52.53	60S ribosomal protein L29 OS=Sus scrofa OX=9823 GN=RPL29 PE=1 SV=4	[more]

BLAST of Cp4.1LG12g03050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013674.1	2.77e-75	100.00	60S ribosomal protein L29-1, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAF3599276.1	1.28e-34	51.83	hypothetical protein F2Q69_00039071 [Brassica cretica]	[more]
XP_022959482.1	7.01e-33	100.00	60S ribosomal protein L29-1-like [Cucurbita moschata] >XP_022959483.1 60S riboso...	[more]
XP_023000055.1	5.75e-32	98.36	60S ribosomal protein L29-1 [Cucurbita maxima] >XP_023514069.1 60S ribosomal pro...	[more]
XP_023000056.1	8.17e-32	96.72	60S ribosomal protein L29-1-like [Cucurbita maxima] >KAG7026347.1 60S ribosomal ...	[more]

BLAST of Cp4.1LG12g03050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L4P4	3.40e-33	100.00	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499112 PE=3 SV=1	[more]
A0A6J1H4N3	3.40e-33	100.00	60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111460442 PE=3 SV=...	[more]
A0A6J1KHA4	2.78e-32	98.36	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494362 PE=3 SV=1	[more]
A0A6J1KET9	3.95e-32	96.72	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1	[more]
A0A6J1L1Y3	7.97e-32	96.72	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499113 PE=3 SV=1	[more]

BLAST of Cp4.1LG12g03050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06680.1	3.2e-22	82.54	Ribosomal L29e protein family	[more]
AT3G06700.1	2.7e-21	81.97	Ribosomal L29e protein family	[more]
AT3G06700.2	2.7e-21	81.97	Ribosomal L29e protein family	[more]
AT3G06700.3	2.7e-21	81.97	Ribosomal L29e protein family	[more]
AT3G06680.2	4.7e-21	81.97	Ribosomal L29e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1730		coord: 1..57 e-value: 3.3E-30 score: 106.1 coord: 58..118 e-value: 4.7E-30 score: 105.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..118
None	No IPR available	PANTHER	PTHR12884:SF30	60S RIBOSOMAL PROTEIN L29	coord: 1..55 coord: 58..118
IPR002673	Ribosomal protein L29e	PFAM	PF01779	Ribosomal_L29e	coord: 60..99 e-value: 1.8E-23 score: 82.6 coord: 3..42 e-value: 1.1E-24 score: 86.5
IPR002673	Ribosomal protein L29e	PANTHER	PTHR12884	60S RIBOSOMAL PROTEIN L29	coord: 1..55 coord: 58..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g03050.1	Cp4.1LG12g03050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome