Cp4.1LG12g02450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g02450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionAP-5 complex subunit mu
LocationCp4.1LG12: 1587671 .. 1592308 (+)
RNA-Seq ExpressionCp4.1LG12g02450
SyntenyCp4.1LG12g02450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACCGAGAATGATAGATATACTTCAGACGATCTCACGTCTAGCGTTTAGGGTTTACTTCCGAATGATTTTGAGTTAGCTGCTGCATTTGTTGAGAGAAGGAAGAGGTTAGTTGAGATTGTTCACTTCTACTCCTATATATTTTTTTTGCTTGTTCAAAAACTAGTTAGGAAGTAATTTATTCCTTCCTTTCTACTAAGTCGATGGCCTAGTTGTAGTGCACAAGCTTTCGTGTAACTGTTGTGATGTGCGTCAAATGGAATATCAATCTATAGCAAGTTTATGTCATCATTAAGTGTGTGCTGTGATCTTATTCTCCCAAAACTTTGTCATCACTAAATGTAATATCGATCTAGCACATACAGTAGATTTTCTGGTGTTACTGGTTTGAGGACGTGCTAAATATAAGCCATTGTCATCAATAAGTATGTCGTGTAGCATTGTTCTCTCCTCACTGGTCTTCGTCATCGCTTAATGTAATATAATCTACCACGTGCAGTAGATTAACAGGTGTTGCTGGTCTCACGATTTAGTAAATGCAAATCTTTGTCATCACAACGTGTGTTGTTTAATCTTGTTCTCACAAAGTATTCTGTTATTGCTTTTGACGAAGGCTGAATGCATAGCGGAATTATGGAAATATGCTGTAATTTGTTGTTATGTCCTTCAAAATTCAGAAAAAAAAATTTGTGGTCATATAAAGAAGTTCTAATAAAGACTGCCTGATGTTTCCTTCCCCTTTGCAGGGTCTAATAAGACTCACATTGAGGGATTTTCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTTCTCCCCCACTTGGTAATTTTGTTTTAATGCGTTATCAGGCAATGTGTGCTTCTGGGCCTCCTGTTAAAGGATTTTTACCAATTATCCATGGTCTCTGAGGATAAAGGTGCTTTTTTGTTCAGGCTGTGCCTGATGGAAGGTTATAAAGCTCCTCTGTCTATGGAATTCTGTACTGTAACTATGCCCTTTCCTAGAAGAAGGATTGTATCTTTCGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAGCATTCAGTTGAGTAGAAAATTTTAGCAAGTGGACGAGGGCTCTTGGGAAAAAGTGTTGAGGCAACTTTTCCTGGAACTATCATGTTTTTCACCCTGGCAAATCCAAAGCTGGCATTCTTCAAGTTCTGCCTCTTCTAGTGTAGAGGAGGCAGATAGTGATGTCGAGGCTGAAAGCGCAAGCGATGTGGTCAGTATTGAGGAACTTTTAATGGAGAAAATGAGTAAGGATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTAAACTCTTCTTCTGTACTATTAAGCATTACAACGTTTCATTGCTTAGAGTTGAGCTCAATCTTGTTATAAAGTTCTCATGCCAACATTCTCCCCTCCTCGCAAGTTGAATGACCTCATGTTTCCTACCATTATCATATATTTGCTGCCATTATCATTTATTCTGCCATCCTAGAATGTTGTAGACATGTTCTGTCCCCATGGCTCGCGAGTTTCTGTACTTTTACTCCACACACATATATATAACAACTAAAAAATGGATGGAATGTTGAATTTGTGCAAGGATTGATCATGGTTTTGAAAATATTTTCTCCAACCCATTGTAATTTTCATATGATTGAATTCCACTATAGATATAGCTTGATGAATGCCATGGCGTGAAACCTTCTGCATCTTCCTCTTGCCTTTTGCTCGTGTTAAAAATCAAGGCATCAAAAAATGATTTTATATAATTATCTTCGTGTACAAGGCGGAAATACTTAGTGAAATGCCCTACTTATCAGTGCTTGTCTGATGGTATGTTGGGATTTTTTGTCTACTTATACGGAATTTCTACTTAAAACAAAACTGCTCCGCACGATCATCAATATTTTTCTTTTGTTATGTCTCATATGTTCACAAGGCATTGCACGCACATCTCGTAGATGGGTAAACCCATATTTAGGATTAATGATGGTTGGCAGGTACCAGTTTGAGACAGTGTGTATAGCAAGTTGTCTGAAATGCTTACTTTTTATGGAAAATGGTCATATATATGTCAAAGCTGAAACCATATATATATACTCCCAGTCAATGCTTTGAAAATGTAATTTCTGCGTTGTCTGTATTCTCTTTTACTATATACTAAGGTCATCAATATAAACCTTTAGTCAATATTTCTCGTGCATTTTCTCTCTCCTATTATTTGTGTTAATCTAGATCGTGTGTGTTGTTGTGTGATCCTAACATTTCTTTTATACCATATGGAACTGAAAGTTATTCCTCAACTCCTTAAACCTTTTTACTCGTTCAGGTCAGCATTTATCCGGCTGTTAAAGCTCCAGTTGAGATTTCGACCCAGGTATGTAATCTTACTATAGCGGGCTACATTTTTATTGTAGTATTTGATTCATGTGATAAGATGAAGGAAAAAAAAAAGGAGATTACGAACTGCCTTTTTCACTGTTCTACAACTCCATGTTTTAGTTTGCATGCGTCACACAGCGCATTCTTCTACTATAAATTCTAAACTTTGCACTTTAAATGTGCAAACCTTAAAAAAAACAAAAAAAAAATGCCCTTTAGTGAAATGAAAAGCACTTGTCTGTTTGCTATAATAATTAATTGTCCGATTCCTGTTTACTGAGTTTCTAAAAGAATTTATTGACCTATTTATTTCATTACCTAAATGAACAGGTAACTCCAGGGGATTACATTTTGTGGAACATCCTGTCTGTCTCTTGTCTCTTGTCTCTTGTCTCTTGTCTCTTGCCTCAGAACAAATATAGTTGGTAAATGCCACAAGTTAAGGACATACATACATACATACATACATTTCAGTGGCAACCAGTCTAATCCCATTTGATTTTCTTCACATATCCCATTTTATTTTTATTTTTTCAGGTAATAGGAATTTTATTTGAAGATTTTTGAAATTGTACAATCTAAAAAAACCCTGAACCCATACGTGTTTCTGTGGGTCTTAGTGTAACGGGTTTTTCTGAAAATATACGTACCCATATATTTCTGTCGCGTCGTGCATTTCGTGCCATTGCCCCTTCGTCCCACTTTGATTTGTCAGGGAAGAAGATAGGCACATAAGCTAATGATTACATAAGAACACCAAAATCATTGTGCTATATTTTCTTTTCGTTAATAGATTAATTATATTTTATGTTTATTTTGAAACAGTGTGCACCTGCTTGTCCTGTTCTCATTATCAGTGCATGCAGAAGAGAAGCTTTTTGGTACCCTCTAATTGCACTTGTCTGCCTGGATGGTCATCTGGTGCCCCTCACAATCAGCCTCGAGCCTTCTTAAGGTACGCCCTCGGTAGCCTTATATATCCTATAGCTTAGAGAGAGAGAGGCGCTCATAATTCAACATATTTTTCAAAATAAAAAAATTATTTGAACTTTTACAAAAAGAAAGGGAGGATTAATTTTACGAACTTCACTCATTCACCTTTTCTTGATTGAACAAGTTTACAGTTCAAGAAAGAAGGGAGAATGGAACATTAATTCGACTGAATCGGAACCTTTATTCTCTGAGCTACTGAACCTGAACTTGATTTTGCTACCTGGGTTGTTATCTGGTACCCCTCACAATCAGCCTCTGGCCTTCTTAAGGTACGTCCTCGGTATCCTTATATATCCTATAGCTTAGAGAGAGACGCTCATAATTAAACATATTTTTCAAAATAAAAAAATTATTTGAACTTTTACAAAAAGAAAGGGAGAATTAATTTTACGAACTTCACTCATTCACCTTTCCTGATTGAACAAGTTTACAGTTCAAGAAAGAAGGGAGAATGGAACATTAATTCGACTGAATCGGAACCTTTATTCTCTGAGCTACTGAACCTGAACCTGATTTCGCTACCTGAATGGTTATCTGGTGCCCCTCACAATCAGCCTCTGGCTTTCTTAAGGTACGCCCTCGGTACCCTTATATATCGTATAGCTTAGAGAGAGAGGCGCTCATAATTCAAACATATTTTTCAAAATAAAAAAAATATTGAACTTTTACAAAAGAAAGGGAAAATTGATTTAAATTTATTGATTAATGCATTTTTTTAAAAAGTTTAAATCTGTTTTTTTCCTGAACTTTCATAGTGTGTTCTCCTTTATGGTTCCCAAACATTCAAGTAATATGTTTTTGTGTCTAAATTTTTGTATCCTTTTCTTTTTATATTTGTAAATCATTTTATCCAGAATGCGTGTGCTTTATTTTATTATTTTTGTTTGTTGGACGATATAAACTTGTAAGCAAGTGCTTGAAAGTGGATAAAGTAGAAATAGATTTTATGTTTAATTTGTAATGAATGTTTGGGAACCACGTTTTAAGAAATTCAAATAAAATATATATGAAAGTTCAGGGTCAAAATAGTATTTAAACTTAATTTTCTAATTCGTATTTAAAAAAAAAATTATTTTTGAAAATTTGCTATATTTCTCGGGACAATGAAGAGAGGAGATGCGTTTATTGTCACAATTGCACTATTGCAACAGTGGGACAGTGATTGTGT

mRNA sequence

GGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACCGAGAATGATAGATATACTTCAGACGATCTCACGTCTAGCGTTTAGGGTTTACTTCCGAATGATTTTGAGGTCTAATAAGACTCACATTGAGGGATTTTCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTTCTCCCCCACTTGAGGAGGCAGATAGTGATGTCGAGGCTGAAAGCGCAAGCGATGTGGTCAGTATTGAGGAACTTTTAATGGAGAAAATGAGTAAGGATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTCAGCATTTATCCGGCTGTTAAAGCTCCAGTTGAGATTTCGACCCAGTGTGCACCTGCTTGTCCTGTTCTCATTATCAGTGCATGCAGAAGAGAAGCTTTTTGGTACCCTCTAATTGCACTTGTCTGCCTGGATGGTCATCTGGTGCCCCTCACAATCAGCCTCGAGCCTTCTTAAGTTCAAGAAAGAAGGGAGAATGGAACATTAATTCGACTGAATCGGAACCTTTATTCTCTGAGCTACTGAACCTGAACTTGATTTTGCTACCTGGGTTGTTATCTGGTACCCCTCACAATCAGCCTCTGGCCTTCTTAAGTTCAAGAAAGAAGGGAGAATGGAACATTAATTCGACTGAATCGGAACCTTTATTCTCTGAGCTACTGAACCTGAACCTGATTTCGCTACCTGAATGGTTATCTGGTGCCCCTCACAATCAGCCTCTGGCTTTCTTAAGGTACGCCCTCGGTACCCTTATATATCGTATAGCTTAGAGAGAGAGGCGCTCATAATTCAAACATATTTTTCAAAATAAAAAAAATATTGAACTTTTACAAAAGAAAGGGAAAATTGATTTAAATTTATTGATTAATGCATTTTTTTAAAAAGTTTAAATCTGTTTTTTTCCTGAACTTTCATAGTGTGTTCTCCTTTATGGTTCCCAAACATTCAAGTAATATGTTTTTGTGTCTAAATTTTTGTATCCTTTTCTTTTTATATTTGTAAATCATTTTATCCAGAATGCGTGTGCTTTATTTTATTATTTTTGTTTGTTGGACGATATAAACTTGTAAGCAAGTGCTTGAAAGTGGATAAAGTAGAAATAGATTTTATGTTTAATTTGTAATGAATGTTTGGGAACCACGTTTTAAGAAATTCAAATAAAATATATATGAAAGTTCAGGGTCAAAATAGTATTTAAACTTAATTTTCTAATTCGTATTTAAAAAAAAAATTATTTTTGAAAATTTGCTATATTTCTCGGGACAATGAAGAGAGGAGATGCGTTTATTGTCACAATTGCACTATTGCAACAGTGGGACAGTGATTGTGT

Coding sequence (CDS)

GGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACCGAGAATGATAGATATACTTCAGACGATCTCACGTCTAGCGTTTAGGGTTTACTTCCGAATGATTTTGAGGTCTAATAAGACTCACATTGAGGGATTTTCATTCCATCCTTGTGCCCAAGTTCCTGAACATGGCATAGATAAGCAAGCTGTGATGTTTTCTCCCCCACTTGAGGAGGCAGATAGTGATGTCGAGGCTGAAAGCGCAAGCGATGTGGTCAGTATTGAGGAACTTTTAATGGAGAAAATGAGTAAGGATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTCAGCATTTATCCGGCTGTTAAAGCTCCAGTTGAGATTTCGACCCAGTGTGCACCTGCTTGTCCTGTTCTCATTATCAGTGCATGCAGAAGAGAAGCTTTTTGGTACCCTCTAATTGCACTTGTCTGCCTGGATGGTCATCTGGTGCCCCTCACAATCAGCCTCGAGCCTTCTTAA

Protein sequence

GFQWWRGGGEQHARPRMIDILQTISRLAFRVYFRMILRSNKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPLEEADSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKVSIYPAVKAPVEISTQCAPACPVLIISACRREAFWYPLIALVCLDGHLVPLTISLEPS
Homology
[Close]
BLAST of Cp4.1LG12g02450 vs. ExPASy Swiss-Prot
Match: Q8W0Z6 (AP-5 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP5M PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-13
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 75  DSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKVS------------- 134
           D + E ESA +VV++E+ L++KM+KDLP  ELEEPFCWQAY+YAKVS             
Sbjct: 513 DEESEDESAENVVNVEDFLVQKMNKDLPAAELEEPFCWQAYDYAKVSFKIVGASVSRMSI 572

Query: 135 ------IYPAVKAPVEISTQ 136
                 IYP  K+PVE S Q
Sbjct: 573 DTKSVNIYPTTKSPVEFSAQ 592


HSP 2 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 43  HIEGFSFHPCAQVPEHGIDKQAVMFSPPL 72
           HIE  SFHPCAQVP HGIDKQ ++F PPL
Sbjct: 363 HIEAISFHPCAQVPAHGIDKQNIVFQPPL 391

[Close]
BLAST of Cp4.1LG12g02450 vs. NCBI nr
Match: XP_023548309.1 (AP-5 complex subunit mu-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129 bits (325), Expect = 1.60e-34
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0 

Query: 68  SPPLEEADSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKVSIYPAVK 127
           S  +EEADSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKVSIYPAVK
Sbjct: 50  SSSVEEADSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKVSIYPAVK 109

Query: 128 APVEISTQCAP 138
           APVEISTQ  P
Sbjct: 110 APVEISTQVTP 120

[Close]
BLAST of Cp4.1LG12g02450 vs. NCBI nr
Match: XP_022930247.1 (AP-5 complex subunit mu isoform X2 [Cucurbita moschata])

HSP 1 Score: 124 bits (310), Expect = 3.10e-29
Identity = 85/223 (38.12%), Postives = 90/223 (40.36%), Query Frame = 0 

Query: 40  NKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL---------------------------- 99
           NK  IEG SFHPCAQVPEHGIDKQAVMFSPP+                            
Sbjct: 361 NKARIEGLSFHPCAQVPEHGIDKQAVMFSPPVGNFVLMRYQAICASGPPVKGFYQLSMVS 420

Query: 100 ------------------------------------------------------------ 135
                                                                       
Sbjct: 421 EDKGAFLFKLGLMEGYKAPLSMEFCTVTMSFPRRRIVSFDGTPSIGTVSTTEHSVEWKIL 480

[Close]
BLAST of Cp4.1LG12g02450 vs. NCBI nr
Match: XP_008458532.1 (PREDICTED: AP-5 complex subunit mu [Cucumis melo] >KAA0033441.1 AP-5 complex subunit mu [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 7.05e-27
Identity = 89/243 (36.63%), Postives = 91/243 (37.45%), Query Frame = 0 

Query: 39  SNKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL--------------------------- 98
           SNK  IEG SFHPCAQVPEHGIDKQAVMFSPPL                           
Sbjct: 360 SNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPPVKGFYQLSMV 419

Query: 99  ------------------------------------------------------------ 135
                                                                       
Sbjct: 420 SEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKI 479

[Close]
BLAST of Cp4.1LG12g02450 vs. NCBI nr
Match: XP_004144963.1 (AP-5 complex subunit mu [Cucumis sativus] >KGN46168.1 hypothetical protein Csa_004881 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 4.62e-26
Identity = 87/243 (35.80%), Postives = 91/243 (37.45%), Query Frame = 0 

Query: 39  SNKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL--------------------------- 98
           SNK  IEG SFHPCAQVPEHGIDKQAVMFSPPL                           
Sbjct: 360 SNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPPVKGFYQLSMV 419

Query: 99  ------------------------------------------------------------ 135
                                                                       
Sbjct: 420 SEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKI 479

[Close]
BLAST of Cp4.1LG12g02450 vs. NCBI nr
Match: XP_023515067.1 (AP-5 complex subunit mu [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113 bits (283), Expect = 1.62e-25
Identity = 86/242 (35.54%), Postives = 90/242 (37.19%), Query Frame = 0 

Query: 40  NKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL---------------------------- 99
           NK  IEG SFHPCAQVPEHGIDKQAVMFSPPL                            
Sbjct: 361 NKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAICASGPPVKGFYQLSMVS 420

Query: 100 ------------------------------------------------------------ 135
                                                                       
Sbjct: 421 EDKGAFLFKLGLMEGYKAPLSMEFCTVTMSFPRRRIVSFDGTPSIGTVSTTEHSVEWKIL 480

[Close]
BLAST of Cp4.1LG12g02450 vs. ExPASy TrEMBL
Match: A0A6J1EPV4 (AP-5 complex subunit mu isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436757 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 1.50e-29
Identity = 85/223 (38.12%), Postives = 90/223 (40.36%), Query Frame = 0 

Query: 40  NKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL---------------------------- 99
           NK  IEG SFHPCAQVPEHGIDKQAVMFSPP+                            
Sbjct: 361 NKARIEGLSFHPCAQVPEHGIDKQAVMFSPPVGNFVLMRYQAICASGPPVKGFYQLSMVS 420

Query: 100 ------------------------------------------------------------ 135
                                                                       
Sbjct: 421 EDKGAFLFKLGLMEGYKAPLSMEFCTVTMSFPRRRIVSFDGTPSIGTVSTTEHSVEWKIL 480

[Close]
BLAST of Cp4.1LG12g02450 vs. ExPASy TrEMBL
Match: A0A5A7SVG1 (AP-5 complex subunit mu OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001010 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 3.41e-27
Identity = 89/243 (36.63%), Postives = 91/243 (37.45%), Query Frame = 0 

Query: 39  SNKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL--------------------------- 98
           SNK  IEG SFHPCAQVPEHGIDKQAVMFSPPL                           
Sbjct: 360 SNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPPVKGFYQLSMV 419

Query: 99  ------------------------------------------------------------ 135
                                                                       
Sbjct: 420 SEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKI 479

[Close]
BLAST of Cp4.1LG12g02450 vs. ExPASy TrEMBL
Match: A0A1S3C825 (AP-5 complex subunit mu OS=Cucumis melo OX=3656 GN=LOC103497909 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 3.41e-27
Identity = 89/243 (36.63%), Postives = 91/243 (37.45%), Query Frame = 0 

Query: 39  SNKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL--------------------------- 98
           SNK  IEG SFHPCAQVPEHGIDKQAVMFSPPL                           
Sbjct: 360 SNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPPVKGFYQLSMV 419

Query: 99  ------------------------------------------------------------ 135
                                                                       
Sbjct: 420 SEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKI 479

[Close]
BLAST of Cp4.1LG12g02450 vs. ExPASy TrEMBL
Match: A0A0A0K9K8 (MHD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G062280 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 2.24e-26
Identity = 87/243 (35.80%), Postives = 91/243 (37.45%), Query Frame = 0 

Query: 39  SNKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL--------------------------- 98
           SNK  IEG SFHPCAQVPEHGIDKQAVMFSPPL                           
Sbjct: 360 SNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPPVKGFYQLSMV 419

Query: 99  ------------------------------------------------------------ 135
                                                                       
Sbjct: 420 SEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKI 479

[Close]
BLAST of Cp4.1LG12g02450 vs. ExPASy TrEMBL
Match: A0A6J1KM34 (AP-5 complex subunit mu OS=Cucurbita maxima OX=3661 GN=LOC111494526 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 7.83e-26
Identity = 86/242 (35.54%), Postives = 90/242 (37.19%), Query Frame = 0 

Query: 40  NKTHIEGFSFHPCAQVPEHGIDKQAVMFSPPL---------------------------- 99
           NK  IEG SFHPCAQVPEHGIDKQAVMFSPPL                            
Sbjct: 361 NKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAICASGPPVKGFYQLSMVS 420

Query: 100 ------------------------------------------------------------ 135
                                                                       
Sbjct: 421 EDKGAFLFKLGLMEGYKAPLSMEFCTVTMSFPRRRIVSFDGTPSVGTVSTTEHSVEWKIL 480

[Close]
BLAST of Cp4.1LG12g02450 vs. TAIR 10
Match: AT2G20790.2 (clathrin adaptor complexes medium subunit family protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 75  DSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKVS------------- 134
           D + E ESA +VV++E+ L++KM+KDLP  ELEEPFCWQAY+YAKVS             
Sbjct: 375 DEESEDESAENVVNVEDFLVQKMNKDLPAAELEEPFCWQAYDYAKVSFKIVGASVSRMSI 434

Query: 135 ------IYPAVKAPVEISTQ 136
                 IYP  K+PVE S Q
Sbjct: 435 DTKSVNIYPTTKSPVEFSAQ 454


HSP 2 Score: 54.7 bits (130), Expect = 8.9e-08
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 43  HIEGFSFHPCAQVPEHGIDKQAVMFSPPL 72
           HIE  SFHPCAQVP HGIDKQ ++F PPL
Sbjct: 225 HIEAISFHPCAQVPAHGIDKQNIVFQPPL 253

[Close]
BLAST of Cp4.1LG12g02450 vs. TAIR 10
Match: AT2G20790.1 (clathrin adaptor complexes medium subunit family protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 75  DSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKVS------------- 134
           D + E ESA +VV++E+ L++KM+KDLP  ELEEPFCWQAY+YAKVS             
Sbjct: 513 DEESEDESAENVVNVEDFLVQKMNKDLPAAELEEPFCWQAYDYAKVSFKIVGASVSRMSI 572

Query: 135 ------IYPAVKAPVEISTQ 136
                 IYP  K+PVE S Q
Sbjct: 573 DTKSVNIYPTTKSPVEFSAQ 592


HSP 2 Score: 54.7 bits (130), Expect = 8.9e-08
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 43  HIEGFSFHPCAQVPEHGIDKQAVMFSPPL 72
           HIE  SFHPCAQVP HGIDKQ ++F PPL
Sbjct: 363 HIEAISFHPCAQVPAHGIDKQNIVFQPPL 391

[Close]
BLAST of Cp4.1LG12g02450 vs. TAIR 10
Match: AT2G20790.3 (clathrin adaptor complexes medium subunit family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-11
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 75  DSDVEAESASDVVSIEELLMEKMSKDLPPVELEEPFCWQAYNYAKV 121
           D + E ESA +VV++E+ L++KM+KDLP  ELEEPFCWQAY+YAKV
Sbjct: 375 DEESEDESAENVVNVEDFLVQKMNKDLPAAELEEPFCWQAYDYAKV 420


HSP 2 Score: 54.7 bits (130), Expect = 8.9e-08
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 43  HIEGFSFHPCAQVPEHGIDKQAVMFSPPL 72
           HIE  SFHPCAQVP HGIDKQ ++F PPL
Sbjct: 225 HIEAISFHPCAQVPAHGIDKQNIVFQPPL 253

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02450 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W0Z64.0e-1350.00AP-5 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP5M PE=2 SV=1[more]
BLAST of Cp4.1LG12g02450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023548309.11.60e-3492.96AP-5 complex subunit mu-like [Cucurbita pepo subsp. pepo][more]
XP_022930247.13.10e-2938.12AP-5 complex subunit mu isoform X2 [Cucurbita moschata][more]
XP_008458532.17.05e-2736.63PREDICTED: AP-5 complex subunit mu [Cucumis melo] >KAA0033441.1 AP-5 complex sub... [more]
XP_004144963.14.62e-2635.80AP-5 complex subunit mu [Cucumis sativus] >KGN46168.1 hypothetical protein Csa_0... [more]
XP_023515067.11.62e-2535.54AP-5 complex subunit mu [Cucurbita pepo subsp. pepo][more]
BLAST of Cp4.1LG12g02450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EPV41.50e-2938.12AP-5 complex subunit mu isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436757... [more]
A0A5A7SVG13.41e-2736.63AP-5 complex subunit mu OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C8253.41e-2736.63AP-5 complex subunit mu OS=Cucumis melo OX=3656 GN=LOC103497909 PE=4 SV=1[more]
A0A0A0K9K82.24e-2635.80MHD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G062280 PE=4 SV... [more]
A0A6J1KM347.83e-2635.54AP-5 complex subunit mu OS=Cucurbita maxima OX=3661 GN=LOC111494526 PE=4 SV=1[more]
BLAST of Cp4.1LG12g02450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20790.22.8e-1450.00clathrin adaptor complexes medium subunit family protein [more]
AT2G20790.12.8e-1450.00clathrin adaptor complexes medium subunit family protein [more]
AT2G20790.31.0e-1165.22clathrin adaptor complexes medium subunit family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02450.1Cp4.1LG12g02450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016197 endosomal transport
cellular_component GO:0030119 AP-type membrane coat adaptor complex
cellular_component GO:0005829 cytosol
cellular_component GO:0005770 late endosome
cellular_component GO:0005764 lysosome