Cp4.1LG12g01790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g01790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA-directed RNA polymerase III subunit RPC9
Location	Cp4.1LG12: 1152754 .. 1155413 (-)
RNA-Seq Expression	Cp4.1LG12g01790
Synteny	Cp4.1LG12g01790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACCTCCAAATGGGCCGGAAGTTCATGTAAAAGCCCAATAGTTATTTCCGAAGCCCAGGTAAGCAATCATGTGAGTTCTGTAATTGACCAATTGGGATCGACGAAGGGTTTTTGTCGCCGTCGTCGAGAGGTTTTTGATTCCGGCCAAATCTTTAAGCTTCTTCTCCATGAAAATGTAAGTAATTATTCCTCATTCTTCCTGCAATTTTTTTTCGAACTATTTGATTCTGCGATTTCTTTTTAACAGAGATGTAAATTTACAGTTGCTAACAATTTAGTTGGAAGAATTGTTTGCAGACTAGAGGCCAATGCAGGCGCTCTTACAAATTTCGAGGTGCTCGACTTTTTGAGATCGAAGGGGGCAGCGAAGGATCCCACTAGGGTTCTTGCGAAAGTAGCACCGTCTGAGTACAAGGTTATATAGTTTCTTCCCTTCTTTTTGTGCTGGCCTACGAGTTGTTGTTGCAGGTTTTAATTGGATCCGTTTCCTTTTATTTGTAGGTTTATGATTATTTGAATCAAACTCATGCTTGTAATCAAACGAGAGAAGCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGAAAGCTGAACTTCTCAATATCCTCAATTTGCGACCGATTACCCCGGTTGAGATATTCCCGGTAATTTCCCCCTTTCATGACTGTAATTCTTCCTTAAAATTTTTGTGATCAATTTTTAGATGAATTTTATGTTTTTTGTATGTAGTCTCTGTTCTAAATTCATCTTCCATTTCCCCATATGTGAATAAAGTGACTTTTCGAGGATTGTCAGGAGGGAGTCCCACATCGATTAATTGAAGGGTTAATCATGAGTTTATAAGTATGGAATACATCTCCATTGATATGAGGCCTTTTGGGGAAACCAAAAGACATGAGAGCTTATGTTCAAAGTGGACTATATCATACTATTAGAGAGGTTTCTGATTCTTAACATAGTATCAGAGCCATGCTCTTAACTTAGTCATGTCCATAGAATCTTTAAGTGTCGAACAAAGAAGTTAGTAGCCTCGAAAGTGTAGTCAAAAGTGACTAAATGGCGAACAGAGGATGTACTTTGTTCAAGGGCTCTAGAGAAAAGAGTCGAATTTCAATTAAGAAGAGGCTGTTCGAGGGCTATATAGACCTCAGGGAAAGTTCGAGCAAGGGGAGGCTTTTGAGTGGTGCCTTAAATATTTTTGAATAGTTTTTGTGTTAGGAGGTCAAGGAACTGTGAATGCCATAGAAAGTTTGGTGGACAGAAAAGATCCATAATATTTTAGCTATTTTAATATGAGGCCATCGAATTGCNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTTGGAAGAGAATTACGTAGTCTTCGTAGTTTTTCACTTTTCTGTCGACATTACAAAAGCTTTAGATTCCCTGGCTATGGAACACAGTTGTCTGATTCTCACGAACTTGGTGGAGTAGGTGTCAGCAATTGTAGTTAAAATTCAACTATTGTCATCTTCATCAGTGAATCTGTAGTTCTGTAAAGACTGACTTGGGAAGGATTCCTAAAACAGCATTAGGATTTCTGGACTAAGTTTCTACTTGTTCCTTCACAAATGGTATAGTGAAGTTGTTTTTCCTACCAAATCGATGGACCCTCGTGTATAGTTGTTGATACCTTATGTTACCGTTCAAGTCTACCGTTAGCAGATATTTTCTCTTTGGGTTTTCCTTTTTGGACTTTATCTTAAAGTTTTTAAATGCATATGCTAGGGAGAAATTTCTACATGCTTGTAAAAAAATGTTTTGTTCTCCTTCTTAATCGATGTGGAAGCTTACCGTATTTGTGTACCCACTTCGTGTATAGTAGTACTAATGAGTTATGATTCATCCTACTAAACATTTTTGTTTTTTTAGTGTTAAGTTTTCTACTTGAGCCTTGAACTTAAAAGACTTTATAAGATACCTCCAAATATTCCACAACTCATGTCAACTAATACTGGGCCATTCTTGGGAGGTAAAATTGTTTTTCAAAATAGCTCCCAAACAAATTCTTATGGGTGCTTTTACCATGGACCTCTTTCTCTGTTGGGAACTTGGGATTCTTTGTGGAAAATGAAAACTTTAATTTGGATGAGTGGTTAAATTATGTAGATTAATGGGGGTCTGTTCCTTTTGTTTCTAGATTATAGAGGACAGTGATGTTCGCATGGGAGATGATGGAATTCAAGAGCTTACAGAGATGGTGGAACAGGTGTTCCCTACACCTCAAACTGAACCAACATCCGAAGCAGCCCCGATGGAAGGTAAAGAGGCCGAAACCATGGCAGAGCAGGAAGAAATTGTTGACGCCGGCCAAGAACCCATGGAAACGACTTGAACCCAGTTCAAAAGTTTAGCGGATGTTGGCAGAAATAGGATTAAATGAGCTTCTTGTGCTTGATTTCCCGAGTTCAAAGGGGCTCTCACAATGTTGGCTTGTAAAAGACATTACTCTGTAATGCATCTTCAAGCCGTAACTCAACTATTCTAATGTACAGACACGGGTTTCAGGTGAAAGATGACACTGAGAAGGACAATTCCCGTAATAGAATGTGAAATAGAAAGCTTTTGAGTGCTAAACAATGACATCTGGGCTTCTTTTTATGACT

mRNA sequence

TAAACCTCCAAATGGGCCGGAAGTTCATGTAAAAGCCCAATAGTTATTTCCGAAGCCCAGGTAAGCAATCATGTGAGTTCTGTAATTGACCAATTGGGATCGACGAAGGGTTTTTGTCGCCGTCGTCGAGAGGTTTTTGATTCCGGCCAAATCTTTAAGCTTCTTCTCCATGAAAATACTAGAGGCCAATGCAGGCGCTCTTACAAATTTCGAGGTGCTCGACTTTTTGAGATCGAAGGGGGCAGCGAAGGATCCCACTAGGGTTCTTGCGAAAGTAGCACCGTCTGAGTACAAGGTTTATGATTATTTGAATCAAACTCATGCTTGTAATCAAACGAGAGAAGCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGAAAGCTGAACTTCTCAATATCCTCAATTTGCGACCGATTACCCCGGTTGAGATATTCCCGATTATAGAGGACAGTGATGTTCGCATGGGAGATGATGGAATTCAAGAGCTTACAGAGATGGTGGAACAGGTGTTCCCTACACCTCAAACTGAACCAACATCCGAAGCAGCCCCGATGGAAGGTAAAGAGGCCGAAACCATGGCAGAGCAGGAAGAAATTGTTGACGCCGGCCAAGAACCCATGGAAACGACTTGAACCCAGTTCAAAAGTTTAGCGGATGTTGGCAGAAATAGGATTAAATGAGCTTCTTGTGCTTGATTTCCCGAGTTCAAAGGGGCTCTCACAATGTTGGCTTGTAAAAGACATTACTCTGTAATGCATCTTCAAGCCGTAACTCAACTATTCTAATGTACAGACACGGGTTTCAGGTGAAAGATGACACTGAGAAGGACAATTCCCGTAATAGAATGTGAAATAGAAAGCTTTTGAGTGCTAAACAATGACATCTGGGCTTCTTTTTATGACT

Coding sequence (CDS)

ATGAAAATACTAGAGGCCAATGCAGGCGCTCTTACAAATTTCGAGGTGCTCGACTTTTTGAGATCGAAGGGGGCAGCGAAGGATCCCACTAGGGTTCTTGCGAAAGTAGCACCGTCTGAGTACAAGGTTTATGATTATTTGAATCAAACTCATGCTTGTAATCAAACGAGAGAAGCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGAAAGCTGAACTTCTCAATATCCTCAATTTGCGACCGATTACCCCGGTTGAGATATTCCCGATTATAGAGGACAGTGATGTTCGCATGGGAGATGATGGAATTCAAGAGCTTACAGAGATGGTGGAACAGGTGTTCCCTACACCTCAAACTGAACCAACATCCGAAGCAGCCCCGATGGAAGGTAAAGAGGCCGAAACCATGGCAGAGCAGGAAGAAATTGTTGACGCCGGCCAAGAACCCATGGAAACGACTTGA

Protein sequence

MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAIIEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPTPQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT

Homology

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BLAST of Cp4.1LG12g01790 vs. ExPASy Swiss-Prot
Match: Q8VHM6 (DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Crcp PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++T   N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60

Query: 61  QTREAIIEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMV 120
           Q+   + EF+   K + L KAE L +LN RP+T VEI  ++E+S+ R+ ++ I+ L   V
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPT----PQTEPTSEAAPMEGKE 137
             + P      Q++ TS  A ME +E
Sbjct: 121 TSILPAGPEDEQSKSTSNDAAMEEEE 146

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy Swiss-Prot
Match: A0JN61 (DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-10
Identity = 41/137 (29.93%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++T   +
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKH 60

Query: 61  QTREAIIEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMV 120
           Q+ E + EF+   K + L KAE L +LN RP+T VEI  ++E+S+ R+ ++ I+ L   V
Sbjct: 61  QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPT-PQTEPTSEAA 131
             + P  P+ E    A+
Sbjct: 121 TSILPAGPEAEQQQNAS 137

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy Swiss-Prot
Match: O35427 (DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-10
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++T   N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60

Query: 61  QTREAIIEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMV 120
           Q+   + EF+   K + L KAE L +LN RP+T VEI  ++E+S+ R+ ++ I+ L   V
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPT----PQTEPTSEAAPMEGKE 137
             + P      Q++ TS    ME +E
Sbjct: 121 TSILPAGPEDEQSKSTSNDVAMEEEE 146

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy Swiss-Prot
Match: O75575 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 40/134 (29.85%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACN 60
           M++ +AN+  L+N+EV   L      R +      +     +    Y+   Y+++T   +
Sbjct: 1   MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60

Query: 61  QTREAIIEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMV 120
           Q+ E + EF+   K + L KAE L +LN RP+T VEI  ++E+S+ R+ ++ I+ L   V
Sbjct: 61  QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120

Query: 121 EQVFPTPQTEPTSE 129
             + P    EP +E
Sbjct: 121 TSILP---AEPEAE 131

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy Swiss-Prot
Match: Q60482 (DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 45/144 (31.25%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPS---------EYKVYDYLNQTH 60
           M++ +AN+  L+N+EV   L      KD  R   K+  S          Y+   YL++T 
Sbjct: 1   MEVKDANSALLSNYEVFQLLTD---LKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTP 60

Query: 61  ACNQTREAIIEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRM-GDDGIQEL 120
             +Q+ E + EF+   K + L KAE L +LN RP+T VEI  ++E+++ R   ++ I+ L
Sbjct: 61  CRHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTEEEQIEAL 120

Query: 121 TEMVEQVFPT-PQTEPTSEAAPME 134
              V  + P  P+ E  +    ME
Sbjct: 121 LHTVTHILPAEPEVEQMASTEAME 141

[Close]

BLAST of Cp4.1LG12g01790 vs. NCBI nr
Match: XP_023548749.1 (uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 DNA-directed RNA polymerase III subunit RPC9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013528.1 DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302 bits (774), Expect = 2.66e-103
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT
Sbjct: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of Cp4.1LG12g01790 vs. NCBI nr
Match: XP_022958741.1 (uncharacterized protein LOC111459926 [Cucurbita moschata])

HSP 1 Score: 301 bits (770), Expect = 1.08e-102
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQTEPTSEA PMEGKEAETMAEQEEIVDAGQEPMETT
Sbjct: 121 PQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of Cp4.1LG12g01790 vs. NCBI nr
Match: XP_023006759.1 (uncharacterized protein LOC111499396 [Cucurbita maxima] >XP_023006760.1 uncharacterized protein LOC111499396 [Cucurbita maxima])

HSP 1 Score: 298 bits (763), Expect = 1.27e-101
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQTEPTSE APMEGKEAETMAEQ EIVDAGQEPMETT
Sbjct: 121 PQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of Cp4.1LG12g01790 vs. NCBI nr
Match: XP_022138348.1 (uncharacterized protein LOC111009544 [Momordica charantia])

HSP 1 Score: 249 bits (637), Expect = 2.04e-82
Identity = 132/157 (84.08%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQT AC Q RE+I
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQRRESI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAE+LNI+NLRP TPVEIFPIIEDSDVRMGDDGIQELTEMVE VFP 
Sbjct: 61  IEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPIIEDSDVRMGDDGIQELTEMVEGVFPP 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQT+PT + AP EGKE E MAEQE       EPMETT
Sbjct: 121 PQTQPTPDVAPKEGKEDEAMAEQEGGEGGDGEPMETT 157

[Close]

BLAST of Cp4.1LG12g01790 vs. NCBI nr
Match: XP_038875324.1 (uncharacterized protein LOC120067805 [Benincasa hispida])

HSP 1 Score: 243 bits (619), Expect = 1.34e-79
Identity = 127/162 (78.40%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGI-----QELTEMVE 120
           +EFV++SK+YDLAKAE+LNI+N RPI PVE+FPIIE  + RMGDDG+     QEL  MVE
Sbjct: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120

Query: 121 QVFPTPQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           QVFPTPQ EPTSE AP EGKEAETM EQE   D   EPME T
Sbjct: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 162

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy TrEMBL
Match: A0A6J1H2X6 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111459926 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 5.25e-103
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQTEPTSEA PMEGKEAETMAEQEEIVDAGQEPMETT
Sbjct: 121 PQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy TrEMBL
Match: A0A6J1L324 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111499396 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 6.13e-102
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQTEPTSE APMEGKEAETMAEQ EIVDAGQEPMETT
Sbjct: 121 PQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy TrEMBL
Match: A0A6J1CCS4 (DNA-directed RNA polymerase III subunit RPC9 OS=Momordica charantia OX=3673 GN=LOC111009544 PE=3 SV=1)

HSP 1 Score: 249 bits (637), Expect = 9.89e-83
Identity = 132/157 (84.08%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQT AC Q RE+I
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQRRESI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAE+LNI+NLRP TPVEIFPIIEDSDVRMGDDGIQELTEMVE VFP 
Sbjct: 61  IEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPIIEDSDVRMGDDGIQELTEMVEGVFPP 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQT+PT + AP EGKE E MAEQE       EPMETT
Sbjct: 121 PQTQPTPDVAPKEGKEDEAMAEQEGGEGGDGEPMETT 157

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy TrEMBL
Match: A0A6J1KG58 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111494797 PE=3 SV=1)

HSP 1 Score: 236 bits (602), Expect = 1.86e-77
Identity = 129/157 (82.17%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT A NQTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASNQTREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAE+LNI+NLRPITPVEIFPIIE+SDVRMGDDGIQELTEMVEQVFP 
Sbjct: 61  IEFVDKSKKYDLAKAEILNIVNLRPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPA 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
           PQ+  TSE AP   KEAE M ++E +    +E + TT
Sbjct: 121 PQS--TSEVAPC--KEAEAMEKEEGVGGTEEETVVTT 153

[Close]

BLAST of Cp4.1LG12g01790 vs. ExPASy TrEMBL
Match: A0A6J1EQC1 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111436740 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 8.09e-77
Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT A  QTREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASYQTREAI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGIQELTEMVEQVFPT 120
           IEFVDKSKKYDLAKAE+LNI+NLRPITPVEIFPIIE+SDVRMGDDGIQELT+MVEQVFP 
Sbjct: 61  IEFVDKSKKYDLAKAEILNIVNLRPITPVEIFPIIEESDVRMGDDGIQELTKMVEQVFPA 120

Query: 121 PQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157
            Q+  TS  AP E KEAE M ++E +  A +E M TT
Sbjct: 121 SQS--TSVVAPKECKEAEAMEKEEGVGGADEETMVTT 155

[Close]

BLAST of Cp4.1LG12g01790 vs. TAIR 10
Match: AT5G62950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 81/140 (57.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKI++ANAGALTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGD-DGIQELTEMVEQVFP 120
            +F DK K + LAKAE+LNI+NLRP + VE+ PIIE+ D R  D DGI EL + +    P
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREIDTDGILELVKDLLPPLP 120

Query: 121 TPQTEPTSEAAPMEGKEAET 140
           T        A+P +  E ET
Sbjct: 121 T-------TASPKDDDEEET 133

[Close]

BLAST of Cp4.1LG12g01790 vs. TAIR 10
Match: AT5G62950.3 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 81/140 (57.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
           MKI++ANAGALTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGD-DGIQELTEMVEQVFP 120
            +F DK K + LAKAE+LNI+NLRP + VE+ PIIE+ D R  D DGI EL + +    P
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREIDTDGILELVKDLLPPLP 120

Query: 121 TPQTEPTSEAAPMEGKEAET 140
           T        A+P +  E ET
Sbjct: 121 T-------TASPKDDDEEET 133

[Close]

BLAST of Cp4.1LG12g01790 vs. TAIR 10
Match: AT5G62950.2 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-29
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60
          MKI++ANAGALTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE+I
Sbjct: 1  MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61 IEFVDKSKKYDLAKAELLNILNLRPITPVEIFP 94
           +F DK K + LAKAE+LNI+NLRP + VE+ P
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLP 93

[Close]

BLAST of Cp4.1LG12g01790 vs. TAIR 10
Match: AT3G28956.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-29
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 4   LEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAIIEF 63
           ++ANAGALTNFE+LDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  QTRE++ + 
Sbjct: 1   MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60

Query: 64  VDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGD-DGIQELTEMVEQVFPTPQ 123
            DK K + LAKAE+LNI+NL P + VE+ PIIE+ D R  D DGI EL   V+ + P   
Sbjct: 61  ADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDREIDTDGILEL---VKDLLP--- 120

Query: 124 TEPTSEAAPMEGKEAET 140
             PT+E+     +E ET
Sbjct: 121 PLPTAESPKDNDEEEET 131

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g01790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VHM6	1.6e-10	30.82	DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Cr...	[more]
A0JN61	3.7e-10	29.93	DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 ...	[more]
O35427	4.8e-10	30.14	DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE...	[more]
O75575	1.1e-09	29.85	DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=...	[more]
Q60482	6.9e-09	31.25	DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP...	[more]

BLAST of Cp4.1LG12g01790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548749.1	2.66e-103	100.00	uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 ...	[more]
XP_022958741.1	1.08e-102	99.36	uncharacterized protein LOC111459926 [Cucurbita moschata]	[more]
XP_023006759.1	1.27e-101	98.73	uncharacterized protein LOC111499396 [Cucurbita maxima] >XP_023006760.1 uncharac...	[more]
XP_022138348.1	2.04e-82	84.08	uncharacterized protein LOC111009544 [Momordica charantia]	[more]
XP_038875324.1	1.34e-79	78.40	uncharacterized protein LOC120067805 [Benincasa hispida]	[more]

BLAST of Cp4.1LG12g01790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2X6	5.25e-103	99.36	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1L324	6.13e-102	98.73	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CCS4	9.89e-83	84.08	DNA-directed RNA polymerase III subunit RPC9 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1KG58	1.86e-77	82.17	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1EQC1	8.09e-77	81.53	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Cp4.1LG12g01790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62950.1	1.9e-33	57.86	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.3	1.9e-33	57.86	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.2	1.6e-29	67.74	RNA polymerase II, Rpb4, core protein	[more]
AT3G28956.1	3.6e-29	54.74	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 1..121 e-value: 7.1E-24 score: 95.3
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 10..117 e-value: 4.3E-18 score: 65.8
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 1..119 e-value: 7.7E-29 score: 102.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..157
IPR038846	DNA-directed RNA polymerase III subunit RPC9	PANTHER	PTHR15561	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	coord: 1..141
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 4..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g01790.1	Cp4.1LG12g01790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding