Cp4.1LG12g01460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g01460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description40S ribosomal protein S15
LocationCp4.1LG12: 987461 .. 989710 (+)
RNA-Seq ExpressionCp4.1LG12g01460
SyntenyCp4.1LG12g01460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTATTGAAGGCCCAAGTATGAAGCCCGTATTAACCATAGCTGGTTCCACTCGGCCTAGGGTTTCAGCCACTGGAATTGCAGCAAGTAACCAACATATATATACCGCTGAAAAACGGAGGCTAAAAACCCTGCAGATTCTGAAGCTTCATCGCGCCGATTAGCTCTACCTTCTCATCCCGGAGTTCCGAAAACGTAAACCATGGTATGTTCTCAACTCATTCTTCTCTTCGATTTATCCTTCATCTCTTCCAGTTTCTTTAATGGTGCTGCTTCGGTCTCCTTCAGGCGGATGTGGAAGCCGATGTTGCAGTGGCGGGGCAGCCAAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGAGGCGTCGATTTGGATTCTTTGCTGGACATGTCCACCGATGAGCTCGTCAAGCTCTTCACTGCCCGTGCACGCAGAAGGTTGCTACAACTGAATGTGTCATGAATTGATTTTTGTGTTCTTTTTCATTCTTAACTTGCTCGTTTTTCTAACATTCTTATGGTTTTTGGATAGGTTTCGTCGGGGTTTGACAAGGAAGCCAATGGCTCTTATCAAGAAGCTTCGTAAAGCGGTTAGTATCTTTTAGATCCATTTCTGCCTATTCAATATTGCAATTATTTACAACTTTGTATTGTTTTCTGATTCTCACTGGCGATGCTGTTTTCTGGAATGCAAATGGTGATGGACTCTTTCCTGTGTAGTATCTTAATCTTGCCATGGTTTAGGTTAAAGTTTTTCTTCAGTGTTCTTGATGAGTAGATAGGTGGGAAGAAAATGGTTTAATTAGGCCATTATACCTTAAATATATAGTTATATCAGATGAGATTTCCAACAATATGTTTAGACTATGAATCATTCCTTTTGAGGGCTGTTATTAGCTTATATTCTCAAGCCTCCCTGTATTTGCTTTAACCTTCAAATGAACAACAATGAACTAAAACTTTGGGAAAGTTTTCATTTTCCATAAGCTTTTGCCCCAAATCATCTAGTGGAGAATTTTGCCCCAAATCATCTAGTGGAGAATTTTGCCCTCATGATCAACAGTTTGGAATCAGTTTCATCACAAAGGAATGCACTCCCTCTTTTATTTCTGGTAACACACGCTGTTGTTCTGATAGTGTGGTATTCTTCATTATTAACATGAGTCTGACTTTAAGCCGACATGTTTTACCAACTTCCGTTGCTGCTTGCAATTCTCTCCCTTGTTTTTGCTTTTGGATTTCTCATATCCTGACATGGGAACTTACCCATTGCTGGATATGTAAGTTGATGTACCATGAGTCTCTGAATCTCGTCGTATACGGTTGTGTTAGTTCTTGCAGTTGTCCTGATTTTTCCATTGGATTTCTCATATCTTAACATGAAAACTCAAGATCATCCTTCAGTGGTAGATTTAGATTTGGAAGTGAATGTGTTATGAATCTCCAGAATTTATCATTTTGAACTTTTATATTTTCCATTTTTTTCCAACATGTTCTTGATAAGTTTCGATACACCGACGAAGTATATGTGAACTTGTCCTTCTTCCTTTTCCAAAAAACTGAAGAACAGTTAAGCTATTTTCTTTTGATGTCTCATCTCATTTATTTTTATTTATTTTTTAACTGTAATAGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACACACCTTCGGAACATGATCATTGTGCCAGAGATGATTGGAAGCATCATTGGTGTTTACAACGGCAAAACCTTCAACCAAGTTGAAATCAAGCCAGAGATGATTGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCCGTCAAGCACGGTAGGCCCGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTCAAGTGAAAATCAGTGTCGAGTTCTTGCTTAGTTTTGTTATATTATTACATGAAACTTGGATGTTGATCAGATTTTGTTCTTAGTTTCTGCCCATTTTCTATGCTTTATATAGCTGATTAGTACTATGGAGGCTTGAGCTATTTAGTTTTTTGAAGCTGTTGTTACTGTTAAAATTTTTATTCTACTTGTTTCATCTAAATGTAGACTTGGTTGTACCATTCAGTTTTACATGGTTGTTTGCTCAAATATGTCTCCGTTATTCGTTTAAGAACTCACCATTTAGACTCGAATCTGTTAGTTTAGACATATCTTCTCTGTTTTATTCATCGAAATCAACTGAGTCCTCTTTAATTTGAGAGCCTCTGCTATAATAATT

mRNA sequence

GCTTTATTGAAGGCCCAAGTATGAAGCCCGTATTAACCATAGCTGGTTCCACTCGGCCTAGGGTTTCAGCCACTGGAATTGCAGCAAGTAACCAACATATATATACCGCTGAAAAACGGAGGCTAAAAACCCTGCAGATTCTGAAGCTTCATCGCGCCGATTAGCTCTACCTTCTCATCCCGGAGTTCCGAAAACGTAAACCATGGCGGATGTGGAAGCCGATGTTGCAGTGGCGGGGCAGCCAAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGAGGCGTCGATTTGGATTCTTTGCTGGACATGTCCACCGATGAGCTCGTCAAGCTCTTCACTGCCCGTGCACGCAGAAGGTTTCGTCGGGGTTTGACAAGGAAGCCAATGGCTCTTATCAAGAAGCTTCGTAAAGCGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACACACCTTCGGAACATGATCATTGTGCCAGAGATGATTGGAAGCATCATTGGTGTTTACAACGGCAAAACCTTCAACCAAGTTGAAATCAAGCCAGAGATGATTGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCCGTCAAGCACGGTAGGCCCGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTCAAGTGAAAATCAGTGTCGAGTTCTTGCTTAGTTTTGTTATATTATTACATGAAACTTGGATGTTGATCAGATTTTGTTCTTAGTTTCTGCCCATTTTCTATGCTTTATATAGCTGATTAGTACTATGGAGGCTTGAGCTATTTAGTTTTTTGAAGCTGTTGTTACTGTTAAAATTTTTATTCTACTTGTTTCATCTAAATGTAGACTTGGTTGTACCATTCAGTTTTACATGGTTGTTTGCTCAAATATGTCTCCGTTATTCGTTTAAGAACTCACCATTTAGACTCGAATCTGTTAGTTTAGACATATCTTCTCTGTTTTATTCATCGAAATCAACTGAGTCCTCTTTAATTTGAGAGCCTCTGCTATAATAATT

Coding sequence (CDS)

ATGGCGGATGTGGAAGCCGATGTTGCAGTGGCGGGGCAGCCAAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGAGGCGTCGATTTGGATTCTTTGCTGGACATGTCCACCGATGAGCTCGTCAAGCTCTTCACTGCCCGTGCACGCAGAAGGTTTCGTCGGGGTTTGACAAGGAAGCCAATGGCTCTTATCAAGAAGCTTCGTAAAGCGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACACACCTTCGGAACATGATCATTGTGCCAGAGATGATTGGAAGCATCATTGGTGTTTACAACGGCAAAACCTTCAACCAAGTTGAAATCAAGCCAGAGATGATTGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCCGTCAAGCACGGTAGGCCCGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTCAAGTGA

Protein sequence

MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Homology
[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy Swiss-Prot
Match: Q08112 (40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-74
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy Swiss-Prot
Match: Q9FY64 (40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-74
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy Swiss-Prot
Match: Q945U1 (40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.6e-73
Identity = 139/153 (90.85%), Postives = 143/153 (93.46%), Query Frame = 0 

Query: 1   MADVEADVAVAG-QPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADV   V V G QPKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RK
Sbjct: 1   MADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy Swiss-Prot
Match: P31674 (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 131/150 (87.33%), Postives = 143/150 (95.33%), Query Frame = 0 

Query: 3   DVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKPMA 62
           +VE +VA   QPKKRTF+K+S+RGVDLD+LLDMSTD+LV+LF ARARRRF+RGL RKPMA
Sbjct: 5   EVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMA 64

Query: 63  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 122
           LIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHY
Sbjct: 65  LIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHY 124

Query: 123 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 125 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy Swiss-Prot
Match: O65059 (40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.6e-71
Identity = 135/152 (88.82%), Postives = 143/152 (94.08%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MAD + DV    QPKKRTFKKFS+RGVDLD+LLDM+++ELVKLF ARARRRF+RGL R+P
Sbjct: 1   MADADVDVGPV-QPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]
BLAST of Cp4.1LG12g01460 vs. NCBI nr
Match: XP_022958790.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_023006761.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023548520.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6574934.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013502.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299 bits (766), Expect = 3.03e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. NCBI nr
Match: XP_022930318.1 (40S ribosomal protein S15-4 [Cucurbita moschata] >XP_023000557.1 40S ribosomal protein S15-4 [Cucurbita maxima] >XP_023513952.1 40S ribosomal protein S15-4 [Cucurbita pepo subsp. pepo] >KAG6593857.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026189.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298 bits (763), Expect = 8.69e-102
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. NCBI nr
Match: XP_030470053.1 (40S ribosomal protein S15-4-like isoform X1 [Syzygium oleosum] >XP_030533959.1 40S ribosomal protein S15-4 isoform X1 [Rhodamnia argentea])

HSP 1 Score: 294 bits (753), Expect = 2.91e-100
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. NCBI nr
Match: XP_031398922.1 (40S ribosomal protein S15-4-like [Punica granatum] >KAF8014509.1 hypothetical protein BT93_H0350 [Corymbia citriodora subsp. variegata] >PKI61653.1 hypothetical protein CRG98_017965 [Punica granatum])

HSP 1 Score: 293 bits (749), Expect = 1.19e-99
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MAEVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. NCBI nr
Match: KAF3452310.1 (hypothetical protein FNV43_RR02743 [Rhamnella rubrinervis])

HSP 1 Score: 293 bits (749), Expect = 1.19e-99
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE DVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MADVETDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy TrEMBL
Match: A0A6J1KYN5 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111499397 PE=3 SV=1)

HSP 1 Score: 299 bits (766), Expect = 1.47e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy TrEMBL
Match: A0A6J1H4G4 (40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111459956 PE=3 SV=1)

HSP 1 Score: 299 bits (766), Expect = 1.47e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy TrEMBL
Match: A0A6J1KDZ2 (40S ribosomal protein S15-4 OS=Cucurbita maxima OX=3661 GN=LOC111494798 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 4.21e-102
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy TrEMBL
Match: A0A6J1EUT1 (40S ribosomal protein S15-4 OS=Cucurbita moschata OX=3662 GN=LOC111436804 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 4.21e-102
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. ExPASy TrEMBL
Match: A0A2I0K0Q9 (40S ribosomal protein S15-4-like OS=Punica granatum OX=22663 GN=LOC116209430 PE=3 SV=1)

HSP 1 Score: 293 bits (749), Expect = 5.74e-100
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MAEVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. TAIR 10
Match: AT1G04270.1 (cytosolic ribosomal protein S15 )

HSP 1 Score: 280.4 bits (716), Expect = 8.5e-76
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. TAIR 10
Match: AT5G09510.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 280.4 bits (716), Expect = 8.5e-76
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]
BLAST of Cp4.1LG12g01460 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 273.9 bits (699), Expect = 8.0e-74
Identity = 137/152 (90.13%), Postives = 145/152 (95.39%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRK KREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRK-KREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 151

[Close]
BLAST of Cp4.1LG12g01460 vs. TAIR 10
Match: AT5G09500.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-69
Identity = 133/152 (87.50%), Postives = 139/152 (91.45%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MAD E  VA AG  KKRTFKKFSFRGVDLD+LLDMSTD+LVKLF +R RRRF RGLTRKP
Sbjct: 1   MADPE--VAAAGIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]
BLAST of Cp4.1LG12g01460 vs. TAIR 10
Match: AT5G09490.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-67
Identity = 124/152 (81.58%), Postives = 138/152 (90.79%), Query Frame = 0 

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VE DV+ A   KKRTFKKFSF+GVDLD+LLDM TD+LV+LF +R RRR  RGLTRKP
Sbjct: 1   MAEVEPDVSAAALAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIG
Sbjct: 61  MALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 121 HYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g01460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q081121.2e-7490.7940S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1[more]
Q9FY641.2e-7490.7940S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1[more]
Q945U18.6e-7390.8540S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1[more]
P316741.2e-7187.3340S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2... [more]
O650593.6e-7188.8240S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1[more]
BLAST of Cp4.1LG12g01460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958790.13.03e-102100.0040S ribosomal protein S15-4-like [Cucurbita moschata] >XP_023006761.1 40S riboso... [more]
XP_022930318.18.69e-10299.3440S ribosomal protein S15-4 [Cucurbita moschata] >XP_023000557.1 40S ribosomal p... [more]
XP_030470053.12.91e-10098.0340S ribosomal protein S15-4-like isoform X1 [Syzygium oleosum] >XP_030533959.1 4... [more]
XP_031398922.11.19e-9997.3740S ribosomal protein S15-4-like [Punica granatum] >KAF8014509.1 hypothetical pr... [more]
KAF3452310.11.19e-9997.37hypothetical protein FNV43_RR02743 [Rhamnella rubrinervis][more]
BLAST of Cp4.1LG12g01460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KYN51.47e-102100.0040S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111499397 PE=... [more]
A0A6J1H4G41.47e-102100.0040S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111459956 P... [more]
A0A6J1KDZ24.21e-10299.3440S ribosomal protein S15-4 OS=Cucurbita maxima OX=3661 GN=LOC111494798 PE=3 SV=... [more]
A0A6J1EUT14.21e-10299.3440S ribosomal protein S15-4 OS=Cucurbita moschata OX=3662 GN=LOC111436804 PE=3 S... [more]
A0A2I0K0Q95.74e-10097.3740S ribosomal protein S15-4-like OS=Punica granatum OX=22663 GN=LOC116209430 PE=... [more]
BLAST of Cp4.1LG12g01460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G04270.18.5e-7690.79cytosolic ribosomal protein S15 [more]
AT5G09510.18.5e-7690.79Ribosomal protein S19 family protein [more]
AT1G04270.28.0e-7490.13cytosolic ribosomal protein S15 [more]
AT5G09500.12.7e-6987.50Ribosomal protein S19 family protein [more]
AT5G09490.11.1e-6781.58Ribosomal protein S19 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 105..117
score: 42.93
coord: 117..132
score: 46.98
coord: 85..104
score: 46.13
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 50..135
e-value: 1.7E-33
score: 114.3
IPR002222Ribosomal protein S19/S15PIRSFPIRSF002144RPS19p_RPS19a_RPS15e_RPS19ocoord: 7..152
e-value: 3.2E-38
score: 127.9
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 2..152
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 48..141
score: 21.249146
IPR023575Ribosomal protein S19/S15, superfamilyGENE3D3.30.860.1030s Ribosomal Protein S19; Chain Acoord: 9..152
e-value: 6.7E-73
score: 244.9
IPR023575Ribosomal protein S19/S15, superfamilySUPERFAMILY54570Ribosomal protein S19coord: 55..136
IPR005713Ribosomal protein S19A/S15eTIGRFAMTIGR01025TIGR01025coord: 19..152
e-value: 5.7E-71
score: 234.6
NoneNo IPR availablePANTHERPTHR11880:SF50LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15coord: 2..152
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 105..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g01460.1Cp4.1LG12g01460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome