Cp4.1LG12g01300 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g01300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionEmbryo sac development arrest protein
LocationCp4.1LG12: 818168 .. 818533 (+)
RNA-Seq ExpressionCp4.1LG12g01300
SyntenyCp4.1LG12g01300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCTCCTAGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGTTTGTGAAGCCAAAAGCTACGGGAGTCGACTCAGTCTCGTCGAATCAGCTTCTAGCCGGCTACCTTGCTCACGAGTTTCTCAGTAAAGGCACTTTGTTTGGGGAGAAGTATGAGCCGGCTCGAAGTGAAGCCGTTGGAATGACTAGCTCACAGCCATCTGAGTGTAAGAGGACGAAGCCGGAAGCCGCCGCCGCTGCCGCTCCGAGCGTCAGAAAAGAAAATCATAGCTATGCTGAGGTGGCAAGCATCTTGAAAATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTAA

mRNA sequence

ATGTTGCCTCCTAGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGTTTGTGAAGCCAAAAGCTACGGGAGTCGACTCAGTCTCGTCGAATCAGCTTCTAGCCGGCTACCTTGCTCACGAGTTTCTCAGTAAAGGCACTTTGTTTGGGGAGAAGTATGAGCCGGCTCGAAGTGAAGCCGTTGGAATGACTAGCTCACAGCCATCTGAGTGTAAGAGGACGAAGCCGGAAGCCGCCGCCGCTGCCGCTCCGAGCGTCAGAAAAGAAAATCATAGCTATGCTGAGGTGGCAAGCATCTTGAAAATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTAA

Coding sequence (CDS)

ATGTTGCCTCCTAGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGTTTGTGAAGCCAAAAGCTACGGGAGTCGACTCAGTCTCGTCGAATCAGCTTCTAGCCGGCTACCTTGCTCACGAGTTTCTCAGTAAAGGCACTTTGTTTGGGGAGAAGTATGAGCCGGCTCGAAGTGAAGCCGTTGGAATGACTAGCTCACAGCCATCTGAGTGTAAGAGGACGAAGCCGGAAGCCGCCGCCGCTGCCGCTCCGAGCGTCAGAAAAGAAAATCATAGCTATGCTGAGGTGGCAAGCATCTTGAAAATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTAA

Protein sequence

MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAVGMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIKM
Homology
BLAST of Cp4.1LG12g01300 vs. NCBI nr
Match: XP_023547636.1 (uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.1 uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234 bits (596), Expect = 3.53e-77
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV
Sbjct: 11  MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 70

Query: 61  GMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK 120
           GMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK
Sbjct: 71  GMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK 130

BLAST of Cp4.1LG12g01300 vs. NCBI nr
Match: XP_023006321.1 (uncharacterized protein LOC111499092 [Cucurbita maxima])

HSP 1 Score: 224 bits (572), Expect = 1.51e-73
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEP RSEAV
Sbjct: 11  MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPPRSEAV 70

Query: 61  GMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK 120
           GMTSSQPSECKRTKPEAAAA  PSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK
Sbjct: 71  GMTSSQPSECKRTKPEAAAA--PSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK 129

BLAST of Cp4.1LG12g01300 vs. NCBI nr
Match: XP_022959091.1 (uncharacterized protein LOC111460190 [Cucurbita moschata])

HSP 1 Score: 221 bits (564), Expect = 3.05e-72
Identity = 118/125 (94.40%), Postives = 119/125 (95.20%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPPRASRKRKEVEPFVKPKAT VDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV
Sbjct: 11  MLPPRASRKRKEVEPFVKPKATAVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 70

Query: 61  GMTSSQPSECKRTKPEAA----AAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLA 120
           GMTSSQPSECKR KPEAA    AAAAPSVRKE+HSYAEVASILKMDGAHLPGIVNPAQLA
Sbjct: 71  GMTSSQPSECKRMKPEAATAAAAAAAPSVRKEDHSYAEVASILKMDGAHLPGIVNPAQLA 130

BLAST of Cp4.1LG12g01300 vs. NCBI nr
Match: KAG6574904.1 (hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220 bits (561), Expect = 8.20e-72
Identity = 118/123 (95.93%), Postives = 118/123 (95.93%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV
Sbjct: 11  MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 70

Query: 61  GMTSSQPSECKRTKPEAA--AAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARW 120
            MTSSQPSECKR KPEAA  AAAAPSVRKEN SYAEVASILKMDGAHLPGIVNPAQLARW
Sbjct: 71  RMTSSQPSECKRMKPEAATAAAAAPSVRKENQSYAEVASILKMDGAHLPGIVNPAQLARW 130

BLAST of Cp4.1LG12g01300 vs. NCBI nr
Match: KAG7013475.1 (hypothetical protein SDJN02_23641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219 bits (557), Expect = 9.99e-70
Identity = 117/123 (95.12%), Postives = 118/123 (95.93%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV
Sbjct: 11  MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 70

Query: 61  GMTSSQPSECKRTKPEAA--AAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARW 120
            MTSSQPSECKR KPEAA  AAAAPSVRKEN SYAEVASILKMDGAHLPGIVNPAQLARW
Sbjct: 71  RMTSSQPSECKRMKPEAATAAAAAPSVRKENQSYAEVASILKMDGAHLPGIVNPAQLARW 130

BLAST of Cp4.1LG12g01300 vs. ExPASy TrEMBL
Match: A0A6J1KXG9 (uncharacterized protein LOC111499092 OS=Cucurbita maxima OX=3661 GN=LOC111499092 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 7.31e-74
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEP RSEAV
Sbjct: 11  MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPPRSEAV 70

Query: 61  GMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK 120
           GMTSSQPSECKRTKPEAAAA  PSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK
Sbjct: 71  GMTSSQPSECKRTKPEAAAA--PSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK 129

BLAST of Cp4.1LG12g01300 vs. ExPASy TrEMBL
Match: A0A6J1H3W4 (uncharacterized protein LOC111460190 OS=Cucurbita moschata OX=3662 GN=LOC111460190 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 1.48e-72
Identity = 118/125 (94.40%), Postives = 119/125 (95.20%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPPRASRKRKEVEPFVKPKAT VDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV
Sbjct: 11  MLPPRASRKRKEVEPFVKPKATAVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 70

Query: 61  GMTSSQPSECKRTKPEAA----AAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLA 120
           GMTSSQPSECKR KPEAA    AAAAPSVRKE+HSYAEVASILKMDGAHLPGIVNPAQLA
Sbjct: 71  GMTSSQPSECKRMKPEAATAAAAAAAPSVRKEDHSYAEVASILKMDGAHLPGIVNPAQLA 130

BLAST of Cp4.1LG12g01300 vs. ExPASy TrEMBL
Match: A0A6J1HJY7 (uncharacterized protein LOC111464257 OS=Cucurbita moschata OX=3662 GN=LOC111464257 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 7.17e-63
Identity = 105/121 (86.78%), Postives = 110/121 (90.91%), Query Frame = 0

Query: 1   MLPPRASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAV 60
           MLPP ASRKRKEVE FVKPKA G DSV SN+LLAGYLAHEFLSKGTLFGEKYEPARSEAV
Sbjct: 12  MLPPGASRKRKEVEAFVKPKAVGADSVVSNRLLAGYLAHEFLSKGTLFGEKYEPARSEAV 71

Query: 61  GMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIK 120
           GMT S+P+E K+TKPEAAAA  PSV KEN SYAEVASILKM+GAHLPGIVNPAQLARWIK
Sbjct: 72  GMTCSRPAEYKKTKPEAAAA--PSVEKENQSYAEVASILKMEGAHLPGIVNPAQLARWIK 130

BLAST of Cp4.1LG12g01300 vs. ExPASy TrEMBL
Match: A0A0A0LI65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173040 PE=4 SV=1)

HSP 1 Score: 169 bits (428), Expect = 4.73e-52
Identity = 92/122 (75.41%), Postives = 100/122 (81.97%), Query Frame = 0

Query: 1   MLPPRAS-RKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEA 60
           M PP  S RKRKEVEP VKPK    DS+S+N+LLAGYLAHEFL  GTLFGEKYEPA +EA
Sbjct: 1   MSPPGGSPRKRKEVEPLVKPKVAEADSISANRLLAGYLAHEFLCNGTLFGEKYEPALNEA 60

Query: 61  VGMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWI 120
           VGM +SQ +ECKRTK EAAAA   S++K NHSYAEVA ILKMDGAHLPGIVNP QLA WI
Sbjct: 61  VGMANSQSTECKRTKLEAAAA---SIKKVNHSYAEVARILKMDGAHLPGIVNPGQLAWWI 119

BLAST of Cp4.1LG12g01300 vs. ExPASy TrEMBL
Match: A0A5A7UAS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00360 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.11e-50
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 0

Query: 1   MLPPRAS-RKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEA 60
           M PP  S RKRKEVEP VKPK    D++S+N+LLAGYLAHEFLS GTLFGEKYE A++EA
Sbjct: 1   MSPPGGSPRKRKEVEPLVKPKVAEADAISANRLLAGYLAHEFLSNGTLFGEKYETAQTEA 60

Query: 61  VGMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWI 120
           VGM + Q +ECKRTKPEAAAA    ++K N SYAEVASILKMDGAHLPGIVNP QLA WI
Sbjct: 61  VGMANLQSAECKRTKPEAAAAG---IKKLNPSYAEVASILKMDGAHLPGIVNPGQLAWWI 119

BLAST of Cp4.1LG12g01300 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-19
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 3   PPRASRKRKEVEPFVKPKATG----VDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSE 62
           PP      K+     +P  T      + V SNQLLAGYLAHEFL+ GTLFGE + P +++
Sbjct: 32  PPPTKSIVKKTPIIPRPTTTATVALAEPVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQ 91

Query: 63  AVGMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARW 122
           A G  ++Q  + ++ KP  +    PS  K    Y EVA+IL++DG HLPGIVNP+QLAR+
Sbjct: 92  A-GPLTTQSIDPRKNKP--SHDIEPSDHKRRR-YVEVANILRVDGTHLPGIVNPSQLARF 150

BLAST of Cp4.1LG12g01300 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-17
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 13  VEPFVKPKAT-GVDSVSSNQL-LAGYLAHEFLSKGTLFGEKYEPARSEAVGMTSSQPSEC 72
           V P  K  +T   + + SNQL LAGYL+HE+L++GTLFGE++  AR++A         E 
Sbjct: 51  VNPISKKSSTAAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQA---------ES 110

Query: 73  KRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIKM 122
            + KP      A     +   Y EVA++L+ DGA LPGIVNPAQLAR++K+
Sbjct: 111 SKIKPSHTVEPAEECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFLKL 152

BLAST of Cp4.1LG12g01300 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = 0

Query: 6   ASRKRKEVEPFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFGEKYEPARSEAVGMTSS 65
           ASRKRK+ E  ++  AT       N LLAGY+AHE+L+ GT+ G K     +E   + S 
Sbjct: 11  ASRKRKDTESDLREAAT------PNWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLVSP 70

Query: 66  QPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGIVNPAQLARWIKM 122
            P + +             V+K   SY+EVAS+ K DG H+PG+VNP QLA+WI+M
Sbjct: 71  SPLQSR------------EVKKARQSYSEVASVFKTDGNHVPGVVNPTQLAKWIQM 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023547636.13.53e-77100.00uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.... [more]
XP_023006321.11.51e-7397.52uncharacterized protein LOC111499092 [Cucurbita maxima][more]
XP_022959091.13.05e-7294.40uncharacterized protein LOC111460190 [Cucurbita moschata][more]
KAG6574904.18.20e-7295.93hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013475.19.99e-7095.12hypothetical protein SDJN02_23641, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A6J1KXG97.31e-7497.52uncharacterized protein LOC111499092 OS=Cucurbita maxima OX=3661 GN=LOC111499092... [more]
A0A6J1H3W41.48e-7294.40uncharacterized protein LOC111460190 OS=Cucurbita moschata OX=3662 GN=LOC1114601... [more]
A0A6J1HJY77.17e-6386.78uncharacterized protein LOC111464257 OS=Cucurbita moschata OX=3662 GN=LOC1114642... [more]
A0A0A0LI654.73e-5275.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173040 PE=4 SV=1[more]
A0A5A7UAS91.11e-5073.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G44060.14.5e-1945.53unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G04000.11.1e-1745.05unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G23440.11.4e-1742.24embryo sac development arrest 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..86
NoneNo IPR availablePANTHERPTHR34657EMBRYO SAC DEVELOPMENT ARREST 6coord: 14..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g01300.1Cp4.1LG12g01300.1mRNA