Cp4.1LG12g00640 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG12g00640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG12: 388038 .. 389241 (+)
RNA-Seq ExpressionCp4.1LG12g00640
SyntenyCp4.1LG12g00640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATATAGTATGGTTATGCAAAAGACGGCCTGCGGGTTAACTTCTATTGCTGAATCAAGCGAGGCTCTATCTCTCCCTCTCTCCGAACTCCATCGCCATCGTTCTTCAATCCTGCATCCGGTCGTCCAGTGGTTCTTCCGCACGCTCTAAACTCCAGATTGATCCAGGTAAACAAATGTTCATATTCTATAACTTTTTTTACTCCTAATCGGCGCCGAGAATCTGGGGAATTGGCGTAAAATGGTTGTTGGGTTTGTGTATTGATGATTGAGTCATGGTCGGAAACCCCCCAAAATCTGAAGAATTCAGTATGCCTCTAATGTTTCACCATTGCCCAGTTCTATGGATGAAACTAGTTATGGTTACCTGATAAGTTGAGTTCGATCAGGGACAAGGGCACCAACTGTTTGAAGAAATGCGGCAGAGAAATTGACCTGTGATTGAGAACCATTCTCTGTTAGGGGGCCACGCCGTTTCTTTATTTTCATTCTAATGTCTTCAATTTTCTTTTCAGTTCGAGGAATGGCGAAAGGTATCATATGGGCAACAGCAGAGGATTTAGCGAGGAACAGAGGGCGTGTTATATCCCTTTATCGCCAGATATTGCGGAGCCTCAACTCCCCAAATTTGCCTCTCAGCTTCGCAGCTAGATTAGCAAAGAAGGCGGAGGTTCGTGGCATTTTCTTGCTTGCTTCTGAAGATCGATCTCTTCACAATATTGAAGACCTAATTGATACTGCTGAGTACTCACTCTCTCTATTAAGGAAGGGAGAAATTCCCAAATACATTCAATGAGTAACACTTGATTCTCTTATGGCAATTTTATGTTAGAGTCCTCTCCACCTGCATCAGTGAGTGATACTTGTGCATGCCCTTGCCCTAAATTTCTTATAGTTAACATTTGGGTTCTGCTATAATGTTTGTATTGAATGCTATGCAAAGGAAATTCATCCACTTGATGTTAACCTATGCAAACATTAAGGTTTAGATTCTATTTTGATCCTTGGAGTTGTGTCTCTATATATATGTTGGCCCTTTCAAATGTTCTTTTCAGTATTTGGTTTCAAACTTTCTCGTTTAGATTGTTGTAGATCAATATTCTATTTTTTAGTTTGATATCAAACTCAATATGCCTTATTTAGAATATATGAACCAGTTTTTTGTGTGGGTTTTAGAGATCAAGAAGTATAATATATGGAATCAA

mRNA sequence

AAATATAGTATGGTTATGCAAAAGACGGCCTGCGGGTTAACTTCTATTGCTGAATCAAGCGAGGCTCTATCTCTCCCTCTCTCCGAACTCCATCGCCATCGTTCTTCAATCCTGCATCCGGTCGTCCAGTGGTTCTTCCGCACGCTCTAAACTCCAGATTGATCCAGTTCGAGGAATGGCGAAAGGTATCATATGGGCAACAGCAGAGGATTTAGCGAGGAACAGAGGGCGTGTTATATCCCTTTATCGCCAGATATTGCGGAGCCTCAACTCCCCAAATTTGCCTCTCAGCTTCGCAGCTAGATTAGCAAAGAAGGCGGAGGTTCGTGGCATTTTCTTGCTTGCTTCTGAAGATCGATCTCTTCACAATATTGAAGACCTAATTGATACTGCTGAGTACTCACTCTCTCTATTAAGGAAGGGAGAAATTCCCAAATACATTCAATGAGTAACACTTGATTCTCTTATGGCAATTTTATGTTAGAGTCCTCTCCACCTGCATCAGTGAGTGATACTTGTGCATGCCCTTGCCCTAAATTTCTTATAGTTAACATTTGGGTTCTGCTATAATGTTTGTATTGAATGCTATGCAAAGGAAATTCATCCACTTGATGTTAACCTATGCAAACATTAAGGTTTAGATTCTATTTTGATCCTTGGAGTTGTGTCTCTATATATATGTTGGCCCTTTCAAATGTTCTTTTCAGTATTTGGTTTCAAACTTTCTCGTTTAGATTGTTGTAGATCAATATTCTATTTTTTAGTTTGATATCAAACTCAATATGCCTTATTTAGAATATATGAACCAGTTTTTTGTGTGGGTTTTAGAGATCAAGAAGTATAATATATGGAATCAA

Coding sequence (CDS)

ATGGCGAAAGGTATCATATGGGCAACAGCAGAGGATTTAGCGAGGAACAGAGGGCGTGTTATATCCCTTTATCGCCAGATATTGCGGAGCCTCAACTCCCCAAATTTGCCTCTCAGCTTCGCAGCTAGATTAGCAAAGAAGGCGGAGGTTCGTGGCATTTTCTTGCTTGCTTCTGAAGATCGATCTCTTCACAATATTGAAGACCTAATTGATACTGCTGAGTACTCACTCTCTCTATTAAGGAAGGGAGAAATTCCCAAATACATTCAATGA

Protein sequence

MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEDRSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Homology
[Close]
BLAST of Cp4.1LG12g00640 vs. NCBI nr
Match: XP_023547728.1 (uncharacterized protein LOC111806583 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175 bits (443), Expect = 5.76e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. NCBI nr
Match: XP_022958896.1 (uncharacterized protein LOC111460046 [Cucurbita moschata])

HSP 1 Score: 173 bits (439), Expect = 2.35e-54
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. NCBI nr
Match: XP_038874375.1 (uncharacterized protein LOC120067065 [Benincasa hispida] >XP_038874376.1 uncharacterized protein LOC120067065 [Benincasa hispida] >XP_038874377.1 uncharacterized protein LOC120067065 [Benincasa hispida])

HSP 1 Score: 173 bits (438), Expect = 3.34e-54
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGI+WATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASE+
Sbjct: 1  MAKGIVWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. NCBI nr
Match: XP_008457166.1 (PREDICTED: uncharacterized protein LOC103496906 [Cucumis melo] >XP_031736881.1 uncharacterized protein LOC101207229 [Cucumis sativus] >KAA0039619.1 uncharacterized protein E6C27_scaffold744G00990 [Cucumis melo var. makuwa] >TYK01687.1 uncharacterized protein E5676_scaffold775G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 3.90e-53
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVR IF+LASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. NCBI nr
Match: XP_023006469.1 (uncharacterized protein LOC111499185 [Cucurbita maxima])

HSP 1 Score: 169 bits (428), Expect = 1.12e-52
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          R+LHNIEDLIDTAEYSLSLLRKGEI KYIQ
Sbjct: 61 RALHNIEDLIDTAEYSLSLLRKGEIAKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. ExPASy TrEMBL
Match: A0A6J1H3E8 (uncharacterized protein LOC111460046 OS=Cucurbita moschata OX=3662 GN=LOC111460046 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 1.14e-54
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. ExPASy TrEMBL
Match: A0A5A7TEG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00090 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.89e-53
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVR IF+LASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. ExPASy TrEMBL
Match: A0A0A0LL01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G120390 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.89e-53
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVR IF+LASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. ExPASy TrEMBL
Match: A0A1S3C4V6 (uncharacterized protein LOC103496906 OS=Cucumis melo OX=3656 GN=LOC103496906 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.89e-53
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVR IF+LASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. ExPASy TrEMBL
Match: A0A6J1L292 (uncharacterized protein LOC111499185 OS=Cucurbita maxima OX=3661 GN=LOC111499185 PE=4 SV=1)

HSP 1 Score: 169 bits (428), Expect = 5.42e-53
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASED 60
          MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASE+
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90
          R+LHNIEDLIDTAEYSLSLLRKGEI KYIQ
Sbjct: 61 RALHNIEDLIDTAEYSLSLLRKGEIAKYIQ 90

[Close]
BLAST of Cp4.1LG12g00640 vs. TAIR 10
Match: AT1G65032.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-26
Identity = 55/84 (65.48%), Postives = 70/84 (83.33%), Query Frame = 0 

Query: 3  KGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEDRS 62
          K +IW TAE+ A+NRG+V+SLYRQ+LRS+NSP L LS+A+RLAKKAEVR IFL  SE+ S
Sbjct: 2  KSLIWLTAEEAAKNRGKVLSLYRQLLRSINSPKLQLSYASRLAKKAEVRTIFLFGSEEIS 61

Query: 63 LHNIEDLIDTAEYSLSLLRKGEIP 87
           HN+ DLI T EY+LS L++G+IP
Sbjct: 62 KHNVADLIRTGEYALSQLKQGKIP 85

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g00640 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g00640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023547728.15.76e-55100.00uncharacterized protein LOC111806583 [Cucurbita pepo subsp. pepo][more]
XP_022958896.12.35e-5498.89uncharacterized protein LOC111460046 [Cucurbita moschata][more]
XP_038874375.13.34e-5497.78uncharacterized protein LOC120067065 [Benincasa hispida] >XP_038874376.1 unchara... [more]
XP_008457166.13.90e-5396.67PREDICTED: uncharacterized protein LOC103496906 [Cucumis melo] >XP_031736881.1 u... [more]
XP_023006469.11.12e-5296.67uncharacterized protein LOC111499185 [Cucurbita maxima][more]
BLAST of Cp4.1LG12g00640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H3E81.14e-5498.89uncharacterized protein LOC111460046 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
A0A5A7TEG51.89e-5396.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LL011.89e-5396.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G120390 PE=4 SV=1[more]
A0A1S3C4V61.89e-5396.67uncharacterized protein LOC103496906 OS=Cucumis melo OX=3656 GN=LOC103496906 PE=... [more]
A0A6J1L2925.42e-5396.67uncharacterized protein LOC111499185 OS=Cucurbita maxima OX=3661 GN=LOC111499185... [more]
BLAST of Cp4.1LG12g00640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G65032.13.7e-2665.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36724COMPLEX 1 LYR-LIKE PROTEINcoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g00640.1Cp4.1LG12g00640.1mRNA