Cp4.1LG12g00360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG12g00360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L3
Location	Cp4.1LG12: 215694 .. 217713 (+)
RNA-Seq Expression	Cp4.1LG12g00360
Synteny	Cp4.1LG12g00360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTTTTTTGTTTTAATTTTTTTTTAATACAAAATATATATATATATTTTTTTTTTTGAGAAAAAATGAAAGTTAAACTTATTTTTATTAATTTAGCAAGTCATTTTTTATTTTATTTTATTTTTAATAATGGAGGGAAAATAAAAGAAATAAGCGGATAAGAAAACGGGTCATTCCTCTCAACCCCAGTTCTTCTTCTTCTTCCTCATCATATGAATCACTGAAACCAGAGAAGCAGAAATGTCCGTCATATCAATTTCATCAGCTTCAACCTCTAACAGACATCCAATTTTCACTAACAATGCTTCTTCTTCGTCGCCATCTTCATCTCTGAAACTAAGAACTTCTTTCCTCGCCCTACCTCTCAAATCCCACCGGAACAACAACGTCCGTTTCCAATTTCCGAGGCCAAGAACCACTAGACGCCCTAACGATGGCCTTTCGGTGTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCTACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAATATCGTCACGCAGATTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAGCCGGAAATGGGACATCTCCAGAAAGCTGGTGCGATTCCTATGCGCCACTTGCAGGAGTTTCGTCTTGAGTCTATTGATGAATTTGAGCCCAATCAGCGCCTGGTTTTTAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACAATTGGAAAGGGTTTTCAAGGTTTGTGTTTCTTGCTTATTCTGTTTGAAGTCTGTGTTCAATTCATTGGCGAAATTGCACTTGCTTTTCTGTTTTTCTTGGAGCTTCTGGTTGTTGGAGATGAATTTAGGCATCCTCAGGATGGATTTAGCATGAATTTTCATTCATTTTTTTGCTGTTTGAATCCACAATGGCACATACAATTCCAAAGCCTGAACTAGTCTTCGAAGTCTAGATGTAAATTCTAGCCTAAATTGTAAACCATACTTCTACATTTACCTTTCATAAGTGTTTCAAGTATCCTTGGTGCAATTTTTTTTTTAGAATTTTAGACAATTGGGATATGGAATGCTGTGGAAGTGGCATAAAATTGTTCTAGATCATTTTCACACCATTTCAAGCCTTAATTTTTGTTCGAAATTCATTTCTACTCTAAGAATAGTATGAAAACGTTTATGAAAAGTAAGGGTAATATTGCAACGTTTGAAACAATATCTTTTTATAATTTAACCAAAATTTTAATCATTTTATCTTCACTTCCTTACAACATTACTCTCTTTAACTGGTTTCTTGTAACCTTCTCCCTCTTCTAATTCTTCTTCAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCAATGACCCATGGTTCCAAGAGCCACAGAGCACTTGGATCGATTGGTGCAGGAACTACACCGGGGCGTGTTTACAAGGGGAAGAAAATGCCTGGAAGGATGGGAGGAACTAAGAGAAAGATCAGAAAGCTCAAAATTGTAAAGATTGATGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCTAAGATAGTAGGAAAGAACATTCCCAAGAACTAGCTTTAGCTCATCTCTTGGAATTGTTTTCTTTTCTCAGTTCTTTTTTGTTTCTTGAACTGATGCAACTCTTTTACTGGTTATTTGTATTATGATTAGATAACGATTGAGTTCTCTAGAAAATGTTTGATCCATTACCATTTTTCATGAGCTGGTGATTACAAGCAATGAGCTGCATTCATCTATTGATAAATTTTTGTTCTTATTAAGCTTTTTGTGCGTATACTACAAAAATTGTGGTATTCTGAAGCAACTTTGCTTTGTAGGACAATCCATAGAACCATTTTTCCTTTGTTAGGCAATTGGAATTTTCTTTCCA

mRNA sequence

ATTTTTTTTTTGTTTTAATTTTTTTTTAATACAAAATATATATATATATTTTTTTTTTTGAGAAAAAATGAAAGTTAAACTTATTTTTATTAATTTAGCAAGTCATTTTTTATTTTATTTTATTTTTAATAATGGAGGGAAAATAAAAGAAATAAGCGGATAAGAAAACGGGTCATTCCTCTCAACCCCAGTTCTTCTTCTTCTTCCTCATCATATGAATCACTGAAACCAGAGAAGCAGAAATGTCCGTCATATCAATTTCATCAGCTTCAACCTCTAACAGACATCCAATTTTCACTAACAATGCTTCTTCTTCGTCGCCATCTTCATCTCTGAAACTAAGAACTTCTTTCCTCGCCCTACCTCTCAAATCCCACCGGAACAACAACGTCCGTTTCCAATTTCCGAGGCCAAGAACCACTAGACGCCCTAACGATGGCCTTTCGGTGTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCTACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAATATCGTCACGCAGATTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAGCCGGAAATGGGACATCTCCAGAAAGCTGGTGCGATTCCTATGCGCCACTTGCAGGAGTTTCGTCTTGAGTCTATTGATGAATTTGAGCCCAATCAGCGCCTGGTTTTTAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACAATTGGAAAGGGTTTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCAATGACCCATGGTTCCAAGAGCCACAGAGCACTTGGATCGATTGGTGCAGGAACTACACCGGGGCGTGTTTACAAGGGGAAGAAAATGCCTGGAAGGATGGGAGGAACTAAGAGAAAGATCAGAAAGCTCAAAATTGTAAAGATTGATGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCTAAGATAGTAGGAAAGAACATTCCCAAGAACTAGCTTTAGCTCATCTCTTGGAATTGTTTTCTTTTCTCAGTTCTTTTTTGTTTCTTGAACTGATGCAACTCTTTTACTGGTTATTTGTATTATGATTAGATAACGATTGAGTTCTCTAGAAAATGTTTGATCCATTACCATTTTTCATGAGCTGGTGATTACAAGCAATGAGCTGCATTCATCTATTGATAAATTTTTGTTCTTATTAAGCTTTTTGTGCGTATACTACAAAAATTGTGGTATTCTGAAGCAACTTTGCTTTGTAGGACAATCCATAGAACCATTTTTCCTTTGTTAGGCAATTGGAATTTTCTTTCCA

Coding sequence (CDS)

ATGTCCGTCATATCAATTTCATCAGCTTCAACCTCTAACAGACATCCAATTTTCACTAACAATGCTTCTTCTTCGTCGCCATCTTCATCTCTGAAACTAAGAACTTCTTTCCTCGCCCTACCTCTCAAATCCCACCGGAACAACAACGTCCGTTTCCAATTTCCGAGGCCAAGAACCACTAGACGCCCTAACGATGGCCTTTCGGTGTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCTACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAATATCGTCACGCAGATTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAGCCGGAAATGGGACATCTCCAGAAAGCTGGTGCGATTCCTATGCGCCACTTGCAGGAGTTTCGTCTTGAGTCTATTGATGAATTTGAGCCCAATCAGCGCCTGGTTTTTAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACAATTGGAAAGGGTTTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCAATGACCCATGGTTCCAAGAGCCACAGAGCACTTGGATCGATTGGTGCAGGAACTACACCGGGGCGTGTTTACAAGGGGAAGAAAATGCCTGGAAGGATGGGAGGAACTAAGAGAAAGATCAGAAAGCTCAAAATTGTAAAGATTGATGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCTAAGATAGTAGGAAAGAACATTCCCAAGAACTAG

Protein sequence

MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN

Homology

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BLAST of Cp4.1LG12g00360 vs. ExPASy Swiss-Prot
Match: O80360 (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL3 PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 6.4e-109
Identity = 206/266 (77.44%), Postives = 228/266 (85.71%), Query Frame = 0


Query: 28  SSSLKLRTSFL-ALPLKSHRNNNVRFQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGM 87
           ++ L LR+ FL  LPL++ + +         + T       S+  S+EAG+GVMATKLGM
Sbjct: 3   TTPLTLRSPFLHRLPLRALKTH---------KPTSLHISKSSISASLEAGVGVMATKLGM 62

Query: 88  MSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQK 147
           MSFFE  G VVPVTVVGF+EGNIVTQIKTEATDGY+AVQVGYRRVRDRKLTKPEMGHL+K
Sbjct: 63  MSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEK 122

Query: 148 AGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 207
           +G IP+RHLQEFRL+SID FE  Q+L F ELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR
Sbjct: 123 SGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 182

Query: 208 GPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIK 267
           G MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDD LN++MIK
Sbjct: 183 GQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIK 242

Query: 268 GAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GA+PGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 243 GALPGKPGNLLRIAPAKIVGKNIPKS 259

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy Swiss-Prot
Match: P82191 (50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=1 SV=2)

HSP 1 Score: 390.2 bits (1001), Expect = 2.1e-107
Identity = 210/293 (71.67%), Postives = 240/293 (81.91%), Query Frame = 0


Query: 5   SISSASTSNRHPIFTNNASSSSPS-SSLKLRTSFLALPLKSHRNNNVRFQFPRP-RTT-- 64
           S S  S S+   +  +++ + +P   SL+L TSF+  P     N  ++ +   P R+T  
Sbjct: 18  SSSKRSLSSPKAVSLSSSVNGTPKVQSLRLSTSFVCSP-----NQIIKLKSVSPSRSTQL 77

Query: 65  RRPNDGLSV-CMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATD 124
           RR   GL +  MS++AGIGVM TKLGMMSFFE DG VVPVTV+GFKEGNIVTQ+KTE+TD
Sbjct: 78  RRAVGGLEIKMMSVDAGIGVMGTKLGMMSFFEEDGTVVPVTVIGFKEGNIVTQVKTESTD 137

Query: 125 GYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFK 184
           GY+AVQVGY R+RDRKLT PE GHL KAG IPMRHLQEFRL S+D+F P+Q+L+F ELFK
Sbjct: 138 GYNAVQVGYERLRDRKLTMPERGHLNKAGVIPMRHLQEFRLVSVDDFTPSQKLLFEELFK 197

Query: 185 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPG 244
           EGD+VD+SGTTIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPG VYKGKKMPG
Sbjct: 198 EGDMVDISGTTIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSIGAGTTPGHVYKGKKMPG 257

Query: 245 RMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           RMGGTK KIRKLKI+KID DL VVMIKGAVPGKPGNLLR+APAKIVGKNIPKN
Sbjct: 258 RMGGTKTKIRKLKIMKIDTDLRVVMIKGAVPGKPGNLLRLAPAKIVGKNIPKN 305

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy Swiss-Prot
Match: Q9SKX4 (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3A PE=2 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.7e-107
Identity = 194/230 (84.35%), Postives = 209/230 (90.87%), Query Frame = 0


Query: 63  PNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYS 122
           P     V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQIKT ATDGY 
Sbjct: 42  PKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYD 101

Query: 123 AVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKEGD 182
           AVQ+GYRRVRD+KLTKPE GHLQKAG IPMRHLQEFRL +I+ FEPNQ+LVF+E+FKEGD
Sbjct: 102 AVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGD 161

Query: 183 LVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 242
           LVDV+GTTIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 162 LVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 221

Query: 243 GTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GT+ KIRKLKIVK+D +LNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 222 GTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy Swiss-Prot
Match: B0C1D3 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplC PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.3e-64
Identity = 122/213 (57.28%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 77  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQIKTEATDGYSAVQVGYRRVRDRK 136
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQIKT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 137 LTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKEGDLVDVSGTTIGKGF 196
           LT+PE+GHL+K+G+ P+RHLQE+RL  + E+E  Q  +  +LF EG LVD+SGT+IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQS-ISADLFSEGQLVDISGTSIGRGF 122

Query: 197 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 256
            G  KRHNF+RGPM HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K+ IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 257 IDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKN 289
           +D + NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy Swiss-Prot
Match: B1XJT9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplC PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.1e-63
Identity = 122/213 (57.28%), Postives = 164/213 (77.00%), Query Frame = 0


Query: 77  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGN-IVTQIKTEATDGYSAVQVGYRRVRDR 136
           +G++ TKLGM   F+ + G  +PVTVV  + G   VTQIKT  TDGY++VQ+GY  V+++
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVV--QAGPCTVTQIKTSETDGYTSVQIGYGDVKEK 62

Query: 137 KLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKEGDLVDVSGTTIGKG 196
            LTKP++GHL+KA A P+RHL+E+RL+ +  +E  Q +  N +F+ G +VDVSG TIG+G
Sbjct: 63  NLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRG 122

Query: 197 FQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIV 256
           F G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL++V
Sbjct: 123 FAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVV 182

Query: 257 KIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGK 288
           ++D++ N+++IKGA+PGK GNLL IAP+ IVG+
Sbjct: 183 RVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

[Close]

BLAST of Cp4.1LG12g00360 vs. NCBI nr
Match: XP_023547387.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568 bits (1464), Expect = 5.24e-204
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60
           MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT
Sbjct: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60

Query: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120
           RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Cp4.1LG12g00360 vs. NCBI nr
Match: KAG6574805.1 (50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013387.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 564 bits (1454), Expect = 1.75e-202
Identity = 290/292 (99.32%), Postives = 291/292 (99.66%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60
           MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNN+RFQFPRPRTT
Sbjct: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPRTT 60

Query: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120
           RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESID FEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Cp4.1LG12g00360 vs. NCBI nr
Match: XP_023006396.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 563 bits (1451), Expect = 5.02e-202
Identity = 290/292 (99.32%), Postives = 290/292 (99.32%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60
           MSVISISSASTS RHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT
Sbjct: 1   MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60

Query: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120
           RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESID FEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Cp4.1LG12g00360 vs. NCBI nr
Match: XP_022959488.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 562 bits (1448), Expect = 1.44e-201
Identity = 289/292 (98.97%), Postives = 290/292 (99.32%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60
           MSVISIS ASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNN+RFQFPRPRTT
Sbjct: 1   MSVISISLASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPRTT 60

Query: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120
           RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESID FEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Cp4.1LG12g00360 vs. NCBI nr
Match: XP_008460096.1 (PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo])

HSP 1 Score: 526 bits (1354), Expect = 3.17e-187
Identity = 270/293 (92.15%), Postives = 281/293 (95.90%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNN-ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRT 60
           MS+IS SSAS S +HPIFTNN +SSSS SSSL LRTSFLALPLKSH  NN+RF FP  RT
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRRT 60

Query: 61  TRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATD 120
           TRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATD
Sbjct: 61  TRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120

Query: 121 GYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFK 180
           GYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELFK
Sbjct: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFK 180

Query: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240
           EGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMPG
Sbjct: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240

Query: 241 RMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           RMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 RMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy TrEMBL
Match: A0A6J1KXN5 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499138 PE=3 SV=1)

HSP 1 Score: 563 bits (1451), Expect = 2.43e-202
Identity = 290/292 (99.32%), Postives = 290/292 (99.32%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60
           MSVISISSASTS RHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT
Sbjct: 1   MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60

Query: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120
           RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESID FEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy TrEMBL
Match: A0A6J1H630 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460446 PE=3 SV=1)

HSP 1 Score: 562 bits (1448), Expect = 6.97e-202
Identity = 289/292 (98.97%), Postives = 290/292 (99.32%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60
           MSVISIS ASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNN+RFQFPRPRTT
Sbjct: 1   MSVISISLASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPRTT 60

Query: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120
           RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESID FEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy TrEMBL
Match: A0A1S3CBR5 (50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 PE=3 SV=1)

HSP 1 Score: 526 bits (1354), Expect = 1.53e-187
Identity = 270/293 (92.15%), Postives = 281/293 (95.90%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNN-ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRT 60
           MS+IS SSAS S +HPIFTNN +SSSS SSSL LRTSFLALPLKSH  NN+RF FP  RT
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRRT 60

Query: 61  TRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATD 120
           TRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATD
Sbjct: 61  TRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120

Query: 121 GYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFK 180
           GYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELFK
Sbjct: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFK 180

Query: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240
           EGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMPG
Sbjct: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240

Query: 241 RMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           RMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 RMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy TrEMBL
Match: A0A5A7TD05 (50S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002680 PE=3 SV=1)

HSP 1 Score: 523 bits (1346), Expect = 2.54e-186
Identity = 269/293 (91.81%), Postives = 280/293 (95.56%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNN-ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRT 60
           MS+IS SSAS S +HPIFTNN +SSSS SSSL LRTSFLALPLKSH  NN+RF F   RT
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFATRRT 60

Query: 61  TRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATD 120
           TRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATD
Sbjct: 61  TRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120

Query: 121 GYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFK 180
           GYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELFK
Sbjct: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFK 180

Query: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240
           EGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMPG
Sbjct: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240

Query: 241 RMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           RMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 RMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of Cp4.1LG12g00360 vs. ExPASy TrEMBL
Match: A0A0A0K9U5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078530 PE=3 SV=1)

HSP 1 Score: 518 bits (1335), Expect = 1.25e-184
Identity = 266/294 (90.48%), Postives = 280/294 (95.24%), Query Frame = 0


Query: 1   MSVISISSASTSNRHPIFTNN--ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPR 60
           MS+IS SSAS S +HPIFTNN  +SSSS SSSL LRTSFLALPLKSH  NN+RF FP   
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHNKNNLRFHFPTRP 60

Query: 61  TTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEAT 120
           TTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292
           GRMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 294

[Close]

BLAST of Cp4.1LG12g00360 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 389.8 bits (1000), Expect = 1.9e-108
Identity = 194/230 (84.35%), Postives = 209/230 (90.87%), Query Frame = 0


Query: 63  PNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYS 122
           P     V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQIKT ATDGY 
Sbjct: 42  PKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYD 101

Query: 123 AVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKEGD 182
           AVQ+GYRRVRD+KLTKPE GHLQKAG IPMRHLQEFRL +I+ FEPNQ+LVF+E+FKEGD
Sbjct: 102 AVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGD 161

Query: 183 LVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 242
           LVDV+GTTIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 162 LVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 221

Query: 243 GTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GT+ KIRKLKIVK+D +LNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 222 GTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Cp4.1LG12g00360 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 138.7 bits (348), Expect = 7.7e-33
Identity = 80/206 (38.83%), Postives = 123/206 (59.71%), Query Frame = 0


Query: 78  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLT 137
           G++A K GM + ++  GK +P++++ + + NIV+Q+KT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 138 KPEMGHLQKAGAIPMRHLQEFRLESIDEFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQG 197
           K  +GH +  G    R L+EF +   D   P    +    F  G  VDV+G T GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFPVTE-DALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQG 197

Query: 198 GIKRHNFKRGPMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKI 257
            +KRH F   P +HG S SHR+ GS G    PG+V+KG+KM GRMG  +R ++ + + KI
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 258 DDDLNVVMIKGAVPGKPGNLLRIAPA 283
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g00360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80360	6.4e-109	77.44	50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 ...	[more]
P82191	2.1e-107	71.67	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=...	[more]
Q9SKX4	2.7e-107	84.35	50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
B0C1D3	1.3e-64	57.28	50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B1XJT9	3.1e-63	57.28	50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR...	[more]

BLAST of Cp4.1LG12g00360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547387.1	5.24e-204	100.00	50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6574805.1	1.75e-202	99.32	50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_023006396.1	5.02e-202	99.32	50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima]	[more]
XP_022959488.1	1.44e-201	98.97	50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata]	[more]
XP_008460096.1	3.17e-187	92.15	PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo]	[more]

BLAST of Cp4.1LG12g00360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXN5	2.43e-202	99.32	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H630	6.97e-202	98.97	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A1S3CBR5	1.53e-187	92.15	50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 ...	[more]
A0A5A7TD05	2.54e-186	91.81	50S ribosomal protein L3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A0A0K9U5	1.25e-184	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G078530 PE=3 SV=1	[more]

BLAST of Cp4.1LG12g00360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43030.1	1.9e-108	84.35	Ribosomal protein L3 family protein	[more]
AT3G17465.1	7.7e-33	38.83	ribosomal protein L3 plastid	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 171..258 e-value: 5.6E-18 score: 65.1
None	No IPR available	GENE3D	3.30.160.810		coord: 109..169 e-value: 4.5E-20 score: 73.9
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 204..284 e-value: 6.9E-21 score: 76.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..244
None	No IPR available	PANTHER	PTHR11229:SF16	50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC	coord: 71..291
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 78..279 e-value: 4.0E-74 score: 246.8
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 71..291
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 76..283 score: 35.765213
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 178..201
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 75..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g00360.1	Cp4.1LG12g00360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome