Cp4.1LG11g11930 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g11930
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Oligouridylate-binding protein 1-like
Location	Cp4.1LG11: 9795418 .. 9802979 (+)
RNA-Seq Expression	Cp4.1LG11g11930
Synteny	Cp4.1LG11g11930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAATATAGAAAACAAATTCATATAAAAGGGTGCGAGCAGATCTGATCTTACATTTACTCCAAAAATCTATTCGTCTCAAACTCTGTATTGCGCTCGTCTTTCTTCTCTCTGCTCCCNGAAAACAAATTCATATAAAAGGGTGCCAGCAGATCCGATCTTACATTTACTCCAAAAATCTATTCCTCTCAAACTCTGTATTGCGCTCGTCTTTCTTCTCTCTGCTCCCTCCCTTCGAGGGTTTTTCTTTTTCTTTCTTTTCTTTCTTTTCTTTTTCCCTCTTTGTTTCGTTTTTCTTTCTTTTTTCTTTCGTTTTCTTCCTTCTAGAACCCCCAATTCAAGATCTTCGTCTCCTCCATCTCAATCTCACTCTTCCTGGAAGATGCATTATCAGAGGCTTAGACAGCAGGCAATGGTGCAGCACTCTCTGTATCCCCACCCCGCCCTCCTCGCTGCTCCTCAGGTTTCTACTTCTCTNTTTTTTTTTTTTTTTTTTTTTTGGAAAATGGAATCAGGAAAGATTTCATTACAGAACTACAAGCTTTACTGGTGATAAGATATCAATCTTTGAGAGGAGACTAGAAATAAGTTATAGAACAAAAATCTTAGAAAGGGATTCCTCTAATTGGTATATATAAATTATTATCATGCCGACGAAATCATTTTCACGAGGACCTATAACAAGATGTATTGTAGTATAGAGTTCTTCGTAGTGCTGCAAAAACGTGTATGGTTTCTTTTCAACCACAACTTCCAAGCCAAGGCTTTGATGTTTAGAAATATGGCCACTGAGAAGCTGTTCTTGACTTCCGACTGAGGTTGTTCAACGCTTATAGTATGAAAACCAAAGTTCCCGAGTAGTTGGAAAATAAGGAAACAGCGGCTAGGGTTTTAGAATTCTTGTGGCCCTGAAGACGACAGTTAAAATTGGGGTTAACAAATCGTACATGATGTCCAGAGATTATATTCCCATTTGAATCAGAGAAGCGCATGGACATTAACCTAGTGTGCGTCGTCTTTTACCTAATCTAAGAATCATGTATTGTTCCATGTTTTTCTATGACTCAAGTCTTTTTCTTTTTCCTCCTGTTTCACTTTGATTGACCCGTTTGTGCGAACATACATACATGATAAAACTTGCATGCCAATGATTTGATGACAATCGGTTAACTAGTTTTCAAATACTCCTCCTCGCTTCTCTTCTTGCACAAATTGTTGCTAATCATTATGCGAGTCTTAGGAGCCATCCAGATTTTCTTTACCTGTTGTCTTTGGTAACCTAAGTAAGAGATGTCACCTGGATATTCGTTCAGAAATATGATCGTCAATGTATCATTATCTTATTCTTCTTTACATGGGCTTCCATGACAAGTCCTCGAAGATTTCATGCTGTAGAACATGAGTCATTTTGGAGTCTTTTTCATCCCTGGACTTAAAACATTACCCATTGCCAGTGTGTTCGAGTCGGTCAGTGACTCTACTTTTATATAATCTTTTTTCCACATTTGGCTGGAATTTGGGTGAGGAGTGTAAATGTGTTTTTTCTAGGAAAACTCTGTTCTCCCCTTTTCCTTTTCTTGTTTTTTACTTTTTTATTTTGCAGATAGAGCCTATCTTGAGTGGAAACCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTGTGAGTGTTAAATAGACATTTTCTTTTCCTTTTTCTATTTTTTCATTTAGTTCATAACTTTTACACAGTAAGATGGAGTCTTGATTTGGATTAACTTGTACCTTTCTTGCCTTAGATATAGGGTTCCTCATTAGTTTGGCATGTGCTGATTGATTTCCTTTGACACTTCTTATCATGGTCATCGTTTGCTAACACTGATACCATTCTGATACATATGTTGTTTGAATGAGTTAAAGTACACTGGCTGCTATTACATTTCTGTCATTTGTTGTTCTTAATAATTCATCAATCCGAACTAATGAGAAAAATATAGGTATGTCGGAAACATTCATCCCCAAGTCACCGAGCCTCTTCTTCAAGAAGTTTTCTCAAGCATTGGACCCATTGAAGGATGTAAGCTCATTAGGAAGGAGAAGGTGTGGTTTTCGTATAGACTGCCATTTGTTGCTATATGATCTCTTTCCATTATGATAATAAGTACCATCGATTAATGACTATTAGATTTTGACGACTATTTCTTCCTTCAGTTACTAGTTGGTGGAATTATTTCAAATAAGCCAGTGTTTATTCAAAGATCAAGATCTTCTTTGAACGTGCTTTTTTGTTATATGAATATGATACTTGAACTAGATTTGTTCTATAGGTTGTACAACTATGCCCTTGTTTTTTGTTATATAAATAGGTGTTGACCTTATGTCGTTAGTTTTATTTCTGTTTATGCAGTCCTCCTATGGTTTTGTGGATTACTTTGACCGCAGATCAGCTGCAGTTTCTATTATTTCTCTCAATGGAAGAAACTTGTAAGTGAGATTATTTCTTGCATTTTTATTGACATTAACCGATTGAGATTTATTTCAATACATTTTCGCACAGGTTTGGACAACCTGTAAAAGTTAATTGGGCATATGCAAGTAGTCAGAGGGAAGATACATCTGGTTGTATGCTTAGATTGTTTCTCTTCCNTGTAAAAGTTAATTGGGCATATGCAAGTAGTCAGAGGGAAGACACATCTGGTTGTATGCTTAGATTGTTTCTCTTTCCTTTTGATTCTGTATCTAATGAGGATGAGTTTGTAGTATGCGGCTGCTGATTTTTTTAGTATGGCGTATTTTTTCAGGTCATTTTAATATATTTGTTGGTGATCTNTCTAATGAGGATGAGTTTGTAGTATGCGGCTGCTGATTTTTTCAGTATGGCGTATTTTTTCAGGTCATTTTAATATATTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCGTAAGTGCACTCTCCAATTTTTTGTTTGAGTCCGTCTGCTTGGCTTATGCTCAAACGTTTGAGATATGGTAGAGCGTAACTTAATACTATGCAACTGAAATCACCTTGATCTAGCACCTCTAACTTTACTTACCTTAAATACTTCAGGGATGCAAGAGTTATGTGGGACCAGAAAACTGGACGCTCGAGGGGCTATGGTTTTGTTGCATTTCGGAGTGAGCAGGTTTTGGCATTGTTACTATAAGATGTTTCCCCCTTCCTGGACGCCACCCTTGTGTTCTACCAATATAGGAAGTCTTGTATTTGCTTTCTTCAGGACATAGTCCTACTCCTGTTGATAGTTATTTATTCTGTTTTCAGGATGCTCAAAGTGCAATTAATGACCTAAATGGTATACCTACTCCCTCTTGCATTTGGAAATCTTCTGTTGTAATTTCTTTTATCTATTTAGTGACCTGGTTAACCATATCATTTCTTGAGCCATGTATGTAAGGAATGCAATGAGAAATGGGATTATTAAGGAATTGAAAACAGTGTAAGATTGAACCTTGGATAGAGATCCTGAAGTCTAGGCTTGGTTCCTTGGTTCGTTCGAAACTATTTAAAAAGTTATATGAGATTTTTTTTAAGGTCACACTTGTATAATAAAGTATGCATATCAGCTTCTAATTTACTTCATTAACTGGATATCATTGTTATGCTCTTTGGTGTTAAAAGTGCCATAAAGATCATTTCTCTATGCTCACTTTTTGGGACATGAGCATTGTTGTTTCGTTTATTAGAAACTGCTGTATATTCTTTTTTCCCCTCTGTTTTGACCATAAAGGAAAGTGGCTTGGGAGTCGACAGATTAGGTGTAATTGGGCCACAAAAGGTGCTAGTTCTGGTGATGACAAACAGAGTTCAGATTCCAGAAGTGTTGTAGAGCTTACAACTGGATCTTCAGGTATTTCATCAAGAGATATGTAACTCCGAGATTTTCAGCTTTAGTAACCTTCATAGAATTCTTTTATTTACCTTTTTCAAACTTTTATAGTGATGGTTGAAATCTTCCATGTTTTGTACACGCATGATAGTTCTGGCTGTTGAATAGGGAGCCTTTTCTTCTTCTTGTTTGCCCTGGCCTCAGGTTATTCATGTTGCTCTATCTTTTCAATCTTGACCCTTGACCTGTTTCTTGCATGTTGTTCAGCTATAATTATATCCGGCACGTGCATTAGAACTTTGCTCAGTGTGTATAATTAAACCTACATTTTTGCTGATCTTTTCTAATGACGGACATGTCTTTCTTAATGTCTTGTCCTTAAGGTCTGTAGCTTGCTTGTTTATATTTAATAATCATTCCAAAGTCTGCTTAGACAATTATTCTTCGAGAGGTTTGTATTTCTTGCCAAAAAGAGTTGGTAATCATACTAGAGTCTAGATTTCATAAAGCTGAGTTTGTGTCTCTAACTTTGTAATCCCAAGTTAAACGACTTTAACCTATGAGTTCAACCACCTTTAAATTGAAAGTACCTTGTGAATTTTTTGATGACCAATGTTTTGGTTGTTCTGATCTCTGAGTTTGAATGTGATGATTCAGAATAATTCCAAATTGATTAAAATTTCTGGTCAACTTTTTGAACAATTCAACACATGTACGGTCAAACTTACAATCTCAATGTTTTGTTTTCTGATCTCTATAACTTTAACATACGAATTAAACCATCTCAAAGTTTGAGTACCTTGTGAACTTCTTAATGACCAGTATTTTGGGTTTTGATCTCTAATTTTGAATGTGATGGTTATGAATAATTCAAAATTGATTAAAATTTCTGATTAAATTTTTGATAATTGAACACATGCTAGGTTGAACTTCATTCTCAATGTTTTGGGTTCTGATCTCTATAAATTTAATCTATGAGTTAAACCACCTCAAAATTTTAAGTACCTTGTGAATTTCTTAATGACCAATGTTTTGGGTTTTGATCTCTAATTTTGAATATGATGATTATGAATAATCCAAAATTGAATGGAATTTCTGGTTAAAATTTTGAACAATTAAACACATGTAGGGTCAAACTTACAATATTTTAGAGGAAGTAGGGATGTCTAAACCCGTCAAGCTATGCATTTAGGGGTGAAGAATTGAGTCAAAGATCTCTTATATAGCAACTTTATCAATTGGTAATTTTTTTTTATTTTTTTTATTGATATCTAATGTAGTAATTTATAAGGAATTGCCATTAGTGAATGATTTTCCTTCTTCAGCCATCTGTTCTCTTTATCATCGTTCTTTGCTAACTGCGTCCTTCTGATGATCCATTTGTATTTTTTCCTTATTAGTTTTACTTTCACAACCTTGTCATGGCTATTTTTGCAGAGGGTGGTCAAGAGAAATCCAATGAGGAGGCACCCGAGAATAATTCTCAATACACAACCGTATATGTGGGGAATCTGGCTCCCGAGGCAAGGAAATTCTTTTGATAATATTATAGTAACTAATTTGCATAGTAGTTGGTGAAACAGTTAACTTGGGTGAACCTGCCAACTGGAGGACTTGTCAAAGTTCTCTGCCATCTCTAAAGGCATAAGCCTCCTGAATGTGATGGGTTTCTTAAATTTATCTAAAAAGTTTGGCTTGTATCTTCTCTTGGCTCCTTACGTGGTGGTGGGCTGTGCTTTTTGTTGAATCTTTGTGTTCATTCATTGTTCTCCATCGAAGCATGGTTTTCTAATAAATTTATGGTGTATACATTCACAATAATGTGCAGTACAAGCAATCCTACTCACGACTAAAAACTGGATTTTGCATGCCAATTTTGTGCTGTTATAGCATGATTCTTTCAGGATTGCATCATTTTTCAGTGCTTGTACTCTGCAGGTTACGTCAGTTGATCTTCACCGTTATTTTCATGCCCTTGGTGCCGGGATGATTGAAGATGTTAGGGTACAACGGGATAAAGGTTTTGGGTTTGTGAGATATAGCACTCATGCTGAAGCAGCTTTAGCCATCCAAATGGGCAATGCTAGAGTTGTCTGTGGCAAACCAATTAAGGTACAGATGAAAAATTTTCAATTGTCCTCAAAATGAATGTTAATAAATCTTTGATTTGATCTAGTTCTCAGTGCCAATGCGTATTTCAACTTGGTTATTTTGGGTGGAGAACTTGTGTTGCGTGGAAGAGACTAACTTATTCTTTTTTGGTCAAGTAGTAAATGCGGGTTCAGTGGGAAAGGTTATTTTGTGCGACTGTAGGACTTGAGCTTTCATTTATTCACATAATCGTTTTATAATCAAATTCTGCAGTGTTCATGGGGTAGCAAGCCAACCCCGCCAGGGACGAATTCTACCCCCCTTCCTCCACCGAATGTGGGACACATGCCAGGTTTGTCTGCAGCCGACCTTGCTGCCTATGAACGGCAAATGGTATTGAGCAAAATGGGTGCGGCACAAGCGCTAATGCATCCACAGGCCGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATGGGCGGTGCTGGCACTAGTCAAACTATATATGACGGTGGGTTCCAAAATATTGCAACCACCCAACAGCTCATGTATTACTAGGTATTTGAAGTGCTGTATTGTATGATTCTTGTAGTCCATTTGTGGAACTAAAGAAATAGTGTAACTTACGCTTTCTGGGGATTGTGACCCAAGTACAATCTTTGAACCTGCTGCGTTTGGAAATTTAGTGGTAGCCCGGGGGGGAGGGGTGTTGCAGAGTGATTTTTATTTGTTTACTTTGAATGGTTGGTCTTAGTTTGTAATATCCTGCTAGAAACAATATTTTGAGACATCTGGAAATAAGTTCCAACCCTTGAATCTTTATGGCCCCTTAACACCAAAAGTATACTAGAAACCTCTAAACAAAGGTACAACCATCCTACCTGTTGCTGCAGTGATGGTAATTGCAATTTGCAGCATTTTTATTTTCCTTCTTTCTCTAAACCATCACTCAAATTACAATTTTTGATGACAATTAAGGGACAGCAGAAAATTGAAGCTCATTTTCATATCTACCAAGGGTTGTTACCCCAGCTGCTGCTACATACTGTGGAATATAAACGATATTTGTGTAACAATTTACAGGAACAAAGTGGGTCAAGCAAGCTGTCTTCACTTTCAAGCTTGACTCCACCATGCAACTAGTATTTGATTTAATCAGGTAGCAATCGGAGTGAAGAAAGTTGAAACAATAGCCTTAAACTAAATCAACTTCATGATATGCTTTAGCCGTCTACCATGCATTCATTCATGAACAGAGCTCCATCTCCAACTAGAAATGGCAATTGGGTGGCAAGTCAGTCTCCATGGAGCTGATTGGAACCTTTTTGGAACGTTCCATCACATTTTAATTAAGAACAGCAACCAGACGGCAGGGGACATGATCAGTGTTATACATTAAACTCCTTATCGGTTGAATGATGCAGCCGAGTTATCATCATACTGCCCTCTCCAAGCATTTCCACTATCCGTTCCACTGCAAGCTTGATTGGGAGCCTGAATGTGACCCAAATTTCCATCCAAACTCATCTGCTGTACTTCAGCGGATGACAGGATCTTTATGCTCTGA

mRNA sequence

TGAAATATAGAAAACAAATTCATATAAAAGGGTGCGAGCAGATCTGATCTTACATTTACTCCAAAAATCTATTCGTCTCAAACTCTGTATTGCGCTCGTCTTTCTTCTCTCTGCTCCCNGAAAACAAATTCATATAAAAGGGTGCCAGCAGATCCGATCTTACATTTACTCCAAAAATCTATTCCTCTCAAACTCTGTATTGCGCTCGTCTTTCTTCTCTCTGCTCCCTCCCTTCGAGGGTTTTTCTTTTTCTTTCTTTTCTTTCTTTTCTTTTTCCCTCTTTGTTTCGTTTTTCTTTCTTTTTTCTTTCGTTTTCTTCCTTCTAGAACCCCCAATTCAAGATCTTCGTCTCCTCCATCTCAATCTCACTCTTCCTGGAAGATGCATTATCAGAGGCTTAGACAGCAGGCAATGGTGCAGCACTCTCTGTATCCCCACCCCGCCCTCCTCGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAACCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTTACACTGGCTGCTATTACATTTCTGTCATTTGTTGTTCTTAATAATTCATCAATCCGAACTAATGAGAAAAATATAGGTATGTCGGAAACATTCATCCCCAAGTCACCGAGCCTCTTCTTCAAGAAGTTTTCTCAAGCATTGGACCCATTGAAGGATTCCTCCTATGGTTTTGTGGATTACTTTGACCGCAGATCAGCTGCAGTTTCTATTATTTCTCTCAATGGAAGAAACTTGTTTGGACAACCTGTAAAAGTTAATTGGGCATATGCAAGTAGTCAGAGGGAAGATACATCTGGTTGTCATTTTAATATATTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCGGATGCAAGAGTTATGTGGGACCAGAAAACTGGACGCTCGAGGGGCTATGGTTTTGTTGCATTTCGGAGTGAGCAGGATGCTCAAAGTGCAATTAATGACCTAAATGGTATACCTACTCCCTCTTGCATTTGGAAATCTTCTGTTGTAATTTCTTTTATCTATTTAGTGACCTGGTTAACCATATCATTTCTTGAGCCATGAAAGTGGCTTGGGAGTCGACAGATTAGGTGTAATTGGGCCACAAAAGGTGCTAGTTCTGGTGATGACAAACAGAGTTCAGATTCCAGAAGTGTTGTAGAGCTTACAACTGGATCTTCAGAGGGTGGTCAAGAGAAATCCAATGAGGAGGCACCCGAGAATAATTCTCAATACACAACCCATGATTCTTTCAGGATTGCATCATTTTTCAGTGCTTGTACTCTGCAGGTTACGTCAGTTGATCTTCACCGTTATTTTCATGCCCTTGGTGCCGGGATGATTGAAGATGTTAGGGTACAACGGGATAAAGGTTTTGGGTTTGTGAGATATAGCACTCATGCTGAAGCAGCTTTAGCCATCCAAATGGGCAATGCTAGAGTTGTCTGTGGCAAACCAATTAAGTGTTCATGGGGTAGCAAGCCAACCCCGCCAGGGACGAATTCTACCCCCCTTCCTCCACCGAATGTGGGACACATGCCAGGTTTGTCTGCAGCCGACCTTGCTGCCTATGAACGGCAAATGGTATTGAGCAAAATGGGTGCGGCACAAGCGCTAATGCATCCACAGGCCGCTCAGCATGCCCTCAAGCAGGCAGCCATGGGAATGGGGATGGGAATTGGGATGGGCGGTGCTGGCACTAGTCAAACTATATATGACGGTGGGTTCCAAAATATTGCAACCACCCAACAGCTCATGTATTACTAGGTATTTGAAGTGCTGTATTGTATGATTCTTGTAGTCCATTTGTGGAACTAAAGAAATAGTGTAACTTACGCTTTCTGGGGATTGTGACCCAAGTACAATCTTTGAACCTGCTGCGTTTGGAAATTTAGTGGTAGCCCGGGGGGGAGGGGTGTTGCAGAGTGATTTTTATTTGTTTACTTTGAATGGTTGGTCTTAGTTTGTAATATCCTGCTAGAAACAATATTTTGAGACATCTGGAAATAAGTTCCAACCCTTGAATCTTTATGGCCCCTTAACACCAAAAGTATACTAGAAACCTCTAAACAAAGGTACAACCATCCTACCTGTTGCTGCAGTGATGGTAATTGCAATTTGCAGCATTTTTATTTTCCTTCTTTCTCTAAACCATCACTCAAATTACAATTTTTGATGACAATTAAGGGACAGCAGAAAATTGAAGCTCATTTTCATATCTACCAAGGGTTGTTACCCCAGCTGCTGCTACATACTGTGGAATATAAACGATATTTGTGTAACAATTTACAGGAACAAAGTGGGTCAAGCAAGCTGTCTTCACTTTCAAGCTTGACTCCACCATGCAACTAGTATTTGATTTAATCAGGTAGCAATCGGAGTGAAGAAAGTTGAAACAATAGCCTTAAACTAAATCAACTTCATGATATGCTTTAGCCGTCTACCATGCATTCATTCATGAACAGAGCTCCATCTCCAACTAGAAATGGCAATTGGGTGGCAAGTCAGTCTCCATGGAGCTGATTGGAACCTTTTTGGAACGTTCCATCACATTTTAATTAAGAACAGCAACCAGACGGCAGGGGACATGATCAGTGTTATACATTAAACTCCTTATCGGTTGAATGATGCAGCCGAGTTATCATCATACTGCCCTCTCCAAGCATTTCCACTATCCGTTCCACTGCAAGCTTGATTGGGAGCCTGAATGTGACCCAAATTTCCATCCAAACTCATCTGCTGTACTTCAGCGGATGACAGGATCTTTATGCTCTGA

Coding sequence (CDS)

ATGCATTATCAGAGGCTTAGACAGCAGGCAATGGTGCAGCACTCTCTGTATCCCCACCCCGCCCTCCTCGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAACCTGCCTCCTGGCTTTGATTCAAGTACATGCCGCAGTGTTACACTGGCTGCTATTACATTTCTGTCATTTGTTGTTCTTAATAATTCATCAATCCGAACTAATGAGAAAAATATAGGTATGTCGGAAACATTCATCCCCAAGTCACCGAGCCTCTTCTTCAAGAAGTTTTCTCAAGCATTGGACCCATTGAAGGATTCCTCCTATGGTTTTGTGGATTACTTTGACCGCAGATCAGCTGCAGTTTCTATTATTTCTCTCAATGGAAGAAACTTGTTTGGACAACCTGTAAAAGTTAATTGGGCATATGCAAGTAGTCAGAGGGAAGATACATCTGGTTGTCATTTTAATATATTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCGGATGCAAGAGTTATGTGGGACCAGAAAACTGGACGCTCGAGGGGCTATGGTTTTGTTGCATTTCGGAGTGAGCAGGATGCTCAAAGTGCAATTAATGACCTAAATGGTATACCTACTCCCTCTTGCATTTGGAAATCTTCTGTTGTAATTTCTTTTATCTATTTAGTGACCTGGTTAACCATATCATTTCTTGAGCCATGA

Protein sequence

MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVVLNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIISLNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNGIPTPSCIWKSSVVISFIYLVTWLTISFLEP

Homology

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BLAST of Cp4.1LG11g11930 vs. ExPASy Swiss-Prot
Match: Q9M427 (Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-68
Identity = 141/216 (65.28%), Postives = 161/216 (74.54%), Query Frame = 0


Query: 1   MHYQRLR---QQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLS 60
           M  QRL+   QQA++Q SLY HP LLA PQIEPILSGNLPPGFDSSTCRSV +       
Sbjct: 2   MQQQRLKQQQQQALMQQSLY-HPGLLAPPQIEPILSGNLPPGFDSSTCRSVYV------- 61

Query: 61  FVVLNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVS 120
                  +I        + E F    P    K   +       SSYGFVDYFDRRSAA++
Sbjct: 62  ------GNIHPQVTEPLLQEVFASTGPLEGCKLIRK-----DKSSYGFVDYFDRRSAALA 121

Query: 121 IISLNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCS 180
           I++LNGR+LFGQP+KVNWAYAS+QREDTS  H+NIFVGDLSPEVTDATLFACFSVY SCS
Sbjct: 122 IVTLNGRHLFGQPIKVNWAYASAQREDTSN-HYNIFVGDLSPEVTDATLFACFSVYTSCS 181

Query: 181 DARVMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           DARVMWDQKTGRSRG+GFV+FR++Q+AQSAINDLNG
Sbjct: 182 DARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLNG 197

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BLAST of Cp4.1LG11g11930 vs. ExPASy Swiss-Prot
Match: Q9LQI9 (Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.6e-63
Identity = 129/210 (61.43%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 4   QRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVVLNN 63
           Q + QQA++Q     HP LLA PQIEPI SGNLPPGFD STCRS           V + N
Sbjct: 12  QVMMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRS-----------VYVGN 71

Query: 64  SSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIISLNG 123
             I+  E    + E F    P    K   +     + SSYGFV YFDRRSA ++I+SLNG
Sbjct: 72  IHIQVTEPL--LQEVFAGTGPVESCKLIRK-----EKSSYGFVHYFDRRSAGLAILSLNG 131

Query: 124 RNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 183
           R+LFGQP+KVNWAYAS QREDTS  HFNIFVGDLSPEVTDA LF CFSVYP+CSDARVMW
Sbjct: 132 RHLFGQPIKVNWAYASGQREDTSS-HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW 191

Query: 184 DQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           DQKTGRSRG+GFV+FR++QDAQ+AI+++ G
Sbjct: 192 DQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202

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BLAST of Cp4.1LG11g11930 vs. ExPASy Swiss-Prot
Match: Q9LJH8 (Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.6e-63
Identity = 132/219 (60.27%), Postives = 156/219 (71.23%), Query Frame = 0


Query: 2   HYQRLRQQAMV-------QHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAIT 61
           H Q+ +QQAM+       QHSLY HP +LA PQ+EP+ SGNLPPGFD STCRSV +    
Sbjct: 9   HQQQQQQQAMMQQQALMQQHSLY-HPGVLAPPQLEPVPSGNLPPGFDPSTCRSVYV---- 68

Query: 62  FLSFVVLNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSA 121
                     +I T      + E F    P       S  L     SSYGFV YFDRRSA
Sbjct: 69  ---------GNIHTQVTEPLLQEIFTSTGP-----VESSKLIRKDKSSYGFVHYFDRRSA 128

Query: 122 AVSIISLNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYP 181
           A++I+SLNGR+LFGQP+KVNWAYA+ QREDTS  HFNIFVGDLSPEVTDATL+  FSV+ 
Sbjct: 129 ALAILSLNGRHLFGQPIKVNWAYATGQREDTSS-HFNIFVGDLSPEVTDATLYQSFSVFS 188

Query: 182 SCSDARVMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           SCSDARVMWDQKTGRSRG+GFV+FR++QDAQ+AIN++NG
Sbjct: 189 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207

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BLAST of Cp4.1LG11g11930 vs. ExPASy Swiss-Prot
Match: Q9SYG4 (Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-59
Identity = 124/214 (57.94%), Postives = 151/214 (70.56%), Query Frame = 0


Query: 2   HYQRLRQQAMVQH--SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFV 61
           H Q + QQAM+Q   SLY HP ++A PQ+EP+ SGNLPPGFD +TCRSV           
Sbjct: 18  HQQAMIQQAMMQQHPSLY-HPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYA--------- 77

Query: 62  VLNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSII 121
                +I T    I + E F    P    K   +       SSYGFV YFDRR A+++I+
Sbjct: 78  ----GNIHTQVTEILLQEIFASTGPIESCKLIRK-----DKSSYGFVHYFDRRCASMAIM 137

Query: 122 SLNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 181
           +LNGR++FGQP+KVNWAYA+ QREDTS  HFNIFVGDLSPEVTDA LF  FS + SCSDA
Sbjct: 138 TLNGRHIFGQPMKVNWAYATGQREDTSS-HFNIFVGDLSPEVTDAALFDSFSAFNSCSDA 197

Query: 182 RVMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           RVMWDQKTGRSRG+GFV+FR++QDAQ+AIN++NG
Sbjct: 198 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 211

[Close]

BLAST of Cp4.1LG11g11930 vs. ExPASy Swiss-Prot
Match: Q6YZW2 (RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.4e-54
Identity = 114/210 (54.29%), Postives = 146/210 (69.52%), Query Frame = 0


Query: 4   QRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVVLNN 63
           Q L+QQ   Q  +    A  A  Q+EPI +GNLPPGFD STCRSV +             
Sbjct: 31  QALQQQQQYQSGVLAAAAAAAMTQMEPISNGNLPPGFDPSTCRSVYV------------- 90

Query: 64  SSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIISLNG 123
            ++  N     + E F  +S  L  +     L   + SS+GFVDY+DRRSAA++I++L+G
Sbjct: 91  GNVHPNVTESLLIEVF--QSSGLVER---CKLIRKEKSSFGFVDYYDRRSAALAIMTLHG 150

Query: 124 RNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 183
           R++ GQ +KVNWAYAS+QREDTSG HF+IFVGDLS EV DATL+ACFS YPSCSDARVMW
Sbjct: 151 RHICGQAIKVNWAYASTQREDTSG-HFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMW 210

Query: 184 DQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           D KTGRSRGYGFV+FR++Q+A++AI ++ G
Sbjct: 211 DNKTGRSRGYGFVSFRNQQEAETAITEMTG 221

[Close]

BLAST of Cp4.1LG11g11930 vs. NCBI nr
Match: XP_023546296.1 (oligouridylate-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306 bits (783), Expect = 2.13e-99
Identity = 165/213 (77.46%), Postives = 170/213 (79.81%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQPVKVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPVKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 194

[Close]

BLAST of Cp4.1LG11g11930 vs. NCBI nr
Match: KAA0061449.1 (oligouridylate-binding protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 303 bits (775), Expect = 2.86e-98
Identity = 159/213 (74.65%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           M YQRLRQQAM+Q SLYPHP LLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQP+KVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPIKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFR+EQDAQSAIND+NG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRNEQDAQSAINDING 195

[Close]

BLAST of Cp4.1LG11g11930 vs. NCBI nr
Match: KAG7030521.1 (Oligouridylate-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303 bits (775), Expect = 3.44e-98
Identity = 164/213 (77.00%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           MHYQRLRQQAMVQ SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MHYQRLRQQAMVQQSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQPVKVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPVKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 194

[Close]

BLAST of Cp4.1LG11g11930 vs. NCBI nr
Match: KAG6599543.1 (Oligouridylate-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303 bits (775), Expect = 3.44e-98
Identity = 164/213 (77.00%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           MHYQRLRQQAMVQ SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MHYQRLRQQAMVQQSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQPVKVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPVKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 194

[Close]

BLAST of Cp4.1LG11g11930 vs. NCBI nr
Match: XP_022975318.1 (oligouridylate-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 301 bits (772), Expect = 9.48e-98
Identity = 163/213 (76.53%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           MHYQRLRQQAM+Q SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MHYQRLRQQAMMQQSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQPVKVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPVKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 194

[Close]

BLAST of Cp4.1LG11g11930 vs. ExPASy TrEMBL
Match: A0A5A7V704 (Oligouridylate-binding protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00040 PE=4 SV=1)

HSP 1 Score: 303 bits (775), Expect = 1.39e-98
Identity = 159/213 (74.65%), Postives = 168/213 (78.87%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           M YQRLRQQAM+Q SLYPHP LLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQP+KVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPIKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFR+EQDAQSAIND+NG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRNEQDAQSAINDING 195

[Close]

BLAST of Cp4.1LG11g11930 vs. ExPASy TrEMBL
Match: A0A6J1IIV1 (oligouridylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474477 PE=4 SV=1)

HSP 1 Score: 301 bits (772), Expect = 4.59e-98
Identity = 163/213 (76.53%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           MHYQRLRQQAM+Q SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MHYQRLRQQAMMQQSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQPVKVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPVKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 194

[Close]

BLAST of Cp4.1LG11g11930 vs. ExPASy TrEMBL
Match: A0A6J1G2P7 (oligouridylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450279 PE=4 SV=1)

HSP 1 Score: 301 bits (772), Expect = 4.73e-98
Identity = 163/213 (76.53%), Postives = 169/213 (79.34%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           MHYQRLRQQAM+Q SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MHYQRLRQQAMMQQSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQPVKVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPVKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 194

[Close]

BLAST of Cp4.1LG11g11930 vs. ExPASy TrEMBL
Match: A0A5D3CHT1 (Oligouridylate-binding protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001510 PE=4 SV=1)

HSP 1 Score: 295 bits (754), Expect = 2.48e-95
Identity = 158/213 (74.18%), Postives = 167/213 (78.40%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           M YQRLRQQAM+Q SLYPHP LLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQP+KVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPIKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFR+EQDAQSAIND+NG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRNEQDAQSAINDING 194

[Close]

BLAST of Cp4.1LG11g11930 vs. ExPASy TrEMBL
Match: A0A0A0LFH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000020 PE=4 SV=1)

HSP 1 Score: 295 bits (754), Expect = 2.48e-95
Identity = 158/213 (74.18%), Postives = 167/213 (78.40%), Query Frame = 0


Query: 1   MHYQRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVV 60
           M YQRLRQQAM+Q SLYPHP LLAAPQIEPILSGNLPPGFDSSTCRSV +          
Sbjct: 1   MQYQRLRQQAMMQQSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVG--------- 60

Query: 61  LNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIIS 120
               +I        + E F    P    K   +     + SSYGFVDYFDRRSAAVSIIS
Sbjct: 61  ----NIHPQVTEPLLQEVFSSIGPIEGCKLIRK-----EKSSYGFVDYFDRRSAAVSIIS 120

Query: 121 LNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180
           LNGRNLFGQP+KVNWAYASSQREDTSG HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR
Sbjct: 121 LNGRNLFGQPIKVNWAYASSQREDTSG-HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 180

Query: 181 VMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 213
           VMWDQKTGRSRGYGFVAFR+EQDAQSAIND+NG
Sbjct: 181 VMWDQKTGRSRGYGFVAFRNEQDAQSAINDING 194

[Close]

BLAST of Cp4.1LG11g11930 vs. TAIR 10
Match: AT1G17370.1 (oligouridylate binding protein 1B )

HSP 1 Score: 243.4 bits (620), Expect = 1.8e-64
Identity = 129/210 (61.43%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 4   QRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVVLNN 63
           Q + QQA++Q     HP LLA PQIEPI SGNLPPGFD STCRS           V + N
Sbjct: 12  QVMMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRS-----------VYVGN 71

Query: 64  SSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIISLNG 123
             I+  E    + E F    P    K   +     + SSYGFV YFDRRSA ++I+SLNG
Sbjct: 72  IHIQVTEPL--LQEVFAGTGPVESCKLIRK-----EKSSYGFVHYFDRRSAGLAILSLNG 131

Query: 124 RNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 183
           R+LFGQP+KVNWAYAS QREDTS  HFNIFVGDLSPEVTDA LF CFSVYP+CSDARVMW
Sbjct: 132 RHLFGQPIKVNWAYASGQREDTSS-HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW 191

Query: 184 DQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           DQKTGRSRG+GFV+FR++QDAQ+AI+++ G
Sbjct: 192 DQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202

[Close]

BLAST of Cp4.1LG11g11930 vs. TAIR 10
Match: AT1G17370.2 (oligouridylate binding protein 1B )

HSP 1 Score: 243.4 bits (620), Expect = 1.8e-64
Identity = 129/210 (61.43%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 4   QRLRQQAMVQHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFVVLNN 63
           Q + QQA++Q     HP LLA PQIEPI SGNLPPGFD STCRS           V + N
Sbjct: 12  QVMMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRS-----------VYVGN 71

Query: 64  SSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSIISLNG 123
             I+  E    + E F    P    K   +     + SSYGFV YFDRRSA ++I+SLNG
Sbjct: 72  IHIQVTEPL--LQEVFAGTGPVESCKLIRK-----EKSSYGFVHYFDRRSAGLAILSLNG 131

Query: 124 RNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 183
           R+LFGQP+KVNWAYAS QREDTS  HFNIFVGDLSPEVTDA LF CFSVYP+CSDARVMW
Sbjct: 132 RHLFGQPIKVNWAYASGQREDTSS-HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW 191

Query: 184 DQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           DQKTGRSRG+GFV+FR++QDAQ+AI+++ G
Sbjct: 192 DQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202

[Close]

BLAST of Cp4.1LG11g11930 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.8e-64
Identity = 132/219 (60.27%), Postives = 156/219 (71.23%), Query Frame = 0


Query: 2   HYQRLRQQAMV-------QHSLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAIT 61
           H Q+ +QQAM+       QHSLY HP +LA PQ+EP+ SGNLPPGFD STCRSV +    
Sbjct: 9   HQQQQQQQAMMQQQALMQQHSLY-HPGVLAPPQLEPVPSGNLPPGFDPSTCRSVYV---- 68

Query: 62  FLSFVVLNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSA 121
                     +I T      + E F    P       S  L     SSYGFV YFDRRSA
Sbjct: 69  ---------GNIHTQVTEPLLQEIFTSTGP-----VESSKLIRKDKSSYGFVHYFDRRSA 128

Query: 122 AVSIISLNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYP 181
           A++I+SLNGR+LFGQP+KVNWAYA+ QREDTS  HFNIFVGDLSPEVTDATL+  FSV+ 
Sbjct: 129 ALAILSLNGRHLFGQPIKVNWAYATGQREDTSS-HFNIFVGDLSPEVTDATLYQSFSVFS 188

Query: 182 SCSDARVMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           SCSDARVMWDQKTGRSRG+GFV+FR++QDAQ+AIN++NG
Sbjct: 189 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207

[Close]

BLAST of Cp4.1LG11g11930 vs. TAIR 10
Match: AT1G54080.1 (oligouridylate-binding protein 1A )

HSP 1 Score: 231.1 bits (588), Expect = 9.5e-61
Identity = 124/214 (57.94%), Postives = 151/214 (70.56%), Query Frame = 0


Query: 2   HYQRLRQQAMVQH--SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFV 61
           H Q + QQAM+Q   SLY HP ++A PQ+EP+ SGNLPPGFD +TCRSV           
Sbjct: 18  HQQAMIQQAMMQQHPSLY-HPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYA--------- 77

Query: 62  VLNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSII 121
                +I T    I + E F    P    K   +       SSYGFV YFDRR A+++I+
Sbjct: 78  ----GNIHTQVTEILLQEIFASTGPIESCKLIRK-----DKSSYGFVHYFDRRCASMAIM 137

Query: 122 SLNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 181
           +LNGR++FGQP+KVNWAYA+ QREDTS  HFNIFVGDLSPEVTDA LF  FS + SCSDA
Sbjct: 138 TLNGRHIFGQPMKVNWAYATGQREDTSS-HFNIFVGDLSPEVTDAALFDSFSAFNSCSDA 197

Query: 182 RVMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
           RVMWDQKTGRSRG+GFV+FR++QDAQ+AIN++NG
Sbjct: 198 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 211

[Close]

BLAST of Cp4.1LG11g11930 vs. TAIR 10
Match: AT1G54080.2 (oligouridylate-binding protein 1A )

HSP 1 Score: 225.3 bits (573), Expect = 5.2e-59
Identity = 124/218 (56.88%), Postives = 151/218 (69.27%), Query Frame = 0


Query: 2   HYQRLRQQAMVQH--SLYPHPALLAAPQIEPILSGNLPPGFDSSTCRSVTLAAITFLSFV 61
           H Q + QQAM+Q   SLY HP ++A PQ+EP+ SGNLPPGFD +TCRSV           
Sbjct: 18  HQQAMIQQAMMQQHPSLY-HPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYA--------- 77

Query: 62  VLNNSSIRTNEKNIGMSETFIPKSPSLFFKKFSQALDPLKDSSYGFVDYFDRRSAAVSII 121
                +I T    I + E F    P    K   +       SSYGFV YFDRR A+++I+
Sbjct: 78  ----GNIHTQVTEILLQEIFASTGPIESCKLIRK-----DKSSYGFVHYFDRRCASMAIM 137

Query: 122 SLNGRNLFGQPVKVNWAYASSQREDTSGCHFNIFVGDLSPEVTDATLFACFSVYPSCS-- 181
           +LNGR++FGQP+KVNWAYA+ QREDTS  HFNIFVGDLSPEVTDA LF  FS + SCS  
Sbjct: 138 TLNGRHIFGQPMKVNWAYATGQREDTSS-HFNIFVGDLSPEVTDAALFDSFSAFNSCSSY 197

Query: 182 --DARVMWDQKTGRSRGYGFVAFRSEQDAQSAINDLNG 214
             DARVMWDQKTGRSRG+GFV+FR++QDAQ+AIN++NG
Sbjct: 198 YRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 215

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g11930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M427	2.1e-68	65.28	Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE...	[more]
Q9LQI9	2.6e-63	61.43	Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 ...	[more]
Q9LJH8	2.6e-63	60.27	Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 ...	[more]
Q9SYG4	1.3e-59	57.94	Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 ...	[more]
Q6YZW2	8.4e-54	54.29	RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1...	[more]

BLAST of Cp4.1LG11g11930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546296.1	2.13e-99	77.46	oligouridylate-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAA0061449.1	2.86e-98	74.65	oligouridylate-binding protein 1-like [Cucumis melo var. makuwa]	[more]
KAG7030521.1	3.44e-98	77.00	Oligouridylate-binding protein 1, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6599543.1	3.44e-98	77.00	Oligouridylate-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022975318.1	9.48e-98	76.53	oligouridylate-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG11g11930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V704	1.39e-98	74.65	Oligouridylate-binding protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1IIV1	4.59e-98	76.53	oligouridylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1G2P7	4.73e-98	76.53	oligouridylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A5D3CHT1	2.48e-95	74.18	Oligouridylate-binding protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LFH4	2.48e-95	74.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000020 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g11930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17370.1	1.8e-64	61.43	oligouridylate binding protein 1B	[more]
AT1G17370.2	1.8e-64	61.43	oligouridylate binding protein 1B	[more]
AT3G14100.1	1.8e-64	60.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G54080.1	9.5e-61	57.94	oligouridylate-binding protein 1A	[more]
AT1G54080.2	5.2e-59	56.88	oligouridylate-binding protein 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 151..224 e-value: 9.2E-18 score: 75.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 152..217 e-value: 1.2E-16 score: 60.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 150..213 score: 14.69226
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 142..217 e-value: 8.4E-21 score: 76.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 31..141 e-value: 3.6E-6 score: 29.2
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 5..53 coord: 100..213
None	No IPR available	PANTHER	PTHR47640:SF40	NUCLEOLYSIN TIAR-LIKE PROTEIN	coord: 100..213
None	No IPR available	PANTHER	PTHR47640:SF40	NUCLEOLYSIN TIAR-LIKE PROTEIN	coord: 5..53
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 149..215
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 98..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g11930.1	Cp4.1LG11g11930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding