Cp4.1LG11g11860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g11860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Photosystem II PsbX
Location	Cp4.1LG11: 9707770 .. 9708138 (-)
RNA-Seq Expression	Cp4.1LG11g11860
Synteny	Cp4.1LG11g11860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

mRNA sequence

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAGCACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCGCTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCTGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Protein sequence

MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVKRT

Homology

[Close]

BLAST of Cp4.1LG11g11860 vs. NCBI nr
Match: XP_022999231.1 (uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharacterized protein LOC111786846 [Cucurbita pepo subsp. pepo] >XP_023546323.1 uncharacterized protein LOC111805446 [Cucurbita pepo subsp. pepo] >XP_023546324.1 uncharacterized protein LOC111805448 [Cucurbita pepo subsp. pepo] >KAG6599523.1 hypothetical protein SDJN03_09301, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212 bits (539), Expect = 1.35e-68
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 210 bits (535), Expect = 5.49e-68
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. NCBI nr
Match: KAG7030501.1 (hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209 bits (532), Expect = 1.57e-67
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK
Sbjct: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. NCBI nr
Match: XP_038890010.1 (uncharacterized protein LOC120079733 [Benincasa hispida])

HSP 1 Score: 194 bits (494), Expect = 9.78e-62
Identity = 111/122 (90.98%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP ASSNS AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARLAEAFAKPLPLRPSNKPNASSNSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. NCBI nr
Match: KAA0061475.1 (membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family protein [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (487), Expect = 1.14e-60
Identity = 109/122 (89.34%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 6.52e-69
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 2.66e-68
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. ExPASy TrEMBL
Match: A0A5A7V6L0 (Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001140 PE=4 SV=1)

HSP 1 Score: 192 bits (487), Expect = 5.53e-61
Identity = 109/122 (89.34%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. ExPASy TrEMBL
Match: A0A6J1FHW0 (uncharacterized protein LOC111444282 OS=Cucurbita moschata OX=3662 GN=LOC111444282 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 6.66e-60
Identity = 111/123 (90.24%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASS-NSRAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP A+S +S AKFQVRAS+KEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASVKEKA 60

Query: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAGGVVV AILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 122
           KRT
Sbjct: 121 KRT 123

[Close]

BLAST of Cp4.1LG11g11860 vs. ExPASy TrEMBL
Match: A0A0A0LIL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 9.16e-60
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 122
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Cp4.1LG11g11860 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-26
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+S+  P+ N T+     +  F K LPL+PS    A+     + QV+A   +KA+
Sbjct: 1   MASTSAMSLVTPL-NQTR-----SSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 60

Query: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG+V+  I+G ++GVSNFDPVK
Sbjct: 61  TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 116

Query: 121 RT 123
           RT
Sbjct: 121 RT 116

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g11860 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g11860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999231.1	1.35e-68	100.00	uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharac...	[more]
XP_022946746.1	5.49e-68	99.18	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]
KAG7030501.1	1.57e-67	98.36	hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038890010.1	9.78e-62	90.98	uncharacterized protein LOC120079733 [Benincasa hispida]	[more]
KAA0061475.1	1.14e-60	89.34	membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family p...	[more]

BLAST of Cp4.1LG11g11860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KCH8	6.52e-69	100.00	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]
A0A6J1G4H3	2.66e-68	99.18	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A5A7V6L0	5.53e-61	89.34	Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FHW0	6.66e-60	90.24	uncharacterized protein LOC111444282 OS=Cucurbita moschata OX=3662 GN=LOC1114442...	[more]
A0A0A0LIL7	9.16e-60	88.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g11860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	2.2e-26	55.74	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 84..122 e-value: 1.2E-11 score: 46.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..122
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 85..122 e-value: 3.5E-17 score: 62.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g11860.1	Cp4.1LG11g11860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0019904	protein domain specific binding