Cp4.1LG11g11400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g11400
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Cp4.1LG11: 9431063 .. 9431419 (-)
RNA-Seq Expression	Cp4.1LG11g11400
Synteny	Cp4.1LG11g11400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGTGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCGCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGGTAG

mRNA sequence

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGTGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCGCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGGTAG

Coding sequence (CDS)

ATGGCTGCCGTTTCTGTGTCGGCTGAGACTACGCGAAACTTAGCAGTGGCCTATCCAATTGAATTTCTGTTTGACCTCGACATGGTTCTGTCCGGCGCCGACGACTTCGGTTGCTGTCAGATCAGCGCTTCGGATTCCCTTGTGGCGGATTTGCCGACGGTGGTGGCCGATGTTTGTGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGACGGAAAACAAATCCCCTGCGGACACGTGTACCACGAATCTTGTATTTCCTCTTGGCTCGCCGTCGCCAACTGTTGCCCTCTCTGTCGGTGCCTCATCGCCGGTCAACCGCCGGAATCGCCTTCTTCAACTTTGATCCGACGGTAG

Protein sequence

MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR

Homology

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 43  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVA 102
           AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 103 NCCPLCRCLIAGQPPE 110
           N CP+CR  +    P+
Sbjct: 251 NSCPVCRFELPTDDPD 266

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-09
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 43  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVAN 102
           AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 103 CCPLCRCLIAGQP 108
            CP+CR  +  +P
Sbjct: 235 SCPVCRFELPSEP 247

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-09
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 59  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPE 110
           CAVC++DF    + KQ+PC H+YH+ C+  WL + N CP+CR  +    P+
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-09
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 42  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP 101
           SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP
Sbjct: 194 SAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCP 253

Query: 102 LCRCLIAGQP 108
           +CR  +   P
Sbjct: 254 VCRFELPSDP 263

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 21/46 (45.65%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 59  CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIA 105
           C++C +DF+ DE  +++PC H+YHE+CI  WL + + CP+CR  +A
Sbjct: 253 CSICWDDFKIDETVRKLPCSHLYHENCIVPWLNLHSTCPICRKSLA 298

[Close]

BLAST of Cp4.1LG11g11400 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246 bits (629), Expect = 1.87e-82
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Cp4.1LG11g11400 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 245 bits (625), Expect = 7.64e-82
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLA AYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Cp4.1LG11g11400 vs. NCBI nr
Match: KAG6599476.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (622), Expect = 2.19e-81
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLA AYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI+GQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 118

[Close]

BLAST of Cp4.1LG11g11400 vs. NCBI nr
Match: KAG7030453.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (622), Expect = 7.04e-81
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLA AYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLI+GQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLISGQPPESPSSTLIRR 118

[Close]

BLAST of Cp4.1LG11g11400 vs. NCBI nr
Match: XP_038877422.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida])

HSP 1 Score: 205 bits (521), Expect = 5.07e-66
Identity = 98/118 (83.05%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAA +V  E TRNL   YPIEFLFDLDMVLSGADDFGCCQISA+DSLVADLP VVADVCA
Sbjct: 1   MAAAAVMTEPTRNLPATYPIEFLFDLDMVLSGADDFGCCQISATDSLVADLPIVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           VCLEDF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRC +AGQPP+S   TLIRR
Sbjct: 61  VCLEDFLPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCHVAGQPPDS---TLIRR 115

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy TrEMBL
Match: A0A6J1G511 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111450796 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 3.70e-82
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAAVSVSAETTRNLA AYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy TrEMBL
Match: A0A0A0LKR7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 3.21e-62
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60
           MAA +V  E T NL   YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+S   TLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS---TLIRR 115

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy TrEMBL
Match: A0A5A7V2P4 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00540 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 3.72e-59
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60
           MAA +V  E T  L   YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+S   TLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS---TLIRR 116

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy TrEMBL
Match: A0A1S4DZX3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 3.72e-59
Identity = 92/119 (77.31%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGC-CQISASDSLVADLPTVVADVC 60
           MAA +V  E T  L   YPIEFLFDLD VLSGADD  C CQI+ SDS VAD PTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118
           AVCL+DFRPDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+S   TLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS---TLIRR 116

[Close]

BLAST of Cp4.1LG11g11400 vs. ExPASy TrEMBL
Match: A0A6J1DM93 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111021870 PE=4 SV=1)

HSP 1 Score: 184 bits (468), Expect = 3.26e-58
Identity = 89/115 (77.39%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISA---SDSLVADLPTVVAD 60
           MAAV+V AETTRNLA AYP+E LFDLDMVLSG DDFGCC ++A   SDS+VADLPTVVAD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPS 112
           VCAVC EDFR DE GKQIPCGHVYHE CISSWLAVA+CCPLCR  +   PP S S
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCRRRVEPPPPPSTS 115

[Close]

BLAST of Cp4.1LG11g11400 vs. TAIR 10
Match: AT1G68180.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-12
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 47  LVADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           ++ D   V   VCA+C E+F   E+GK++ C H+YH SCI SWL + N CP+CR
Sbjct: 126 IITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of Cp4.1LG11g11400 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-11
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 43  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVA 102
           AS S +  LPTV           + CAVC+++F    D KQ+PC HV+H+ C+  WL + 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 103 NCCPLCRCLIAGQPPE 110
           N CP+CR  +    P+
Sbjct: 251 NSCPVCRFELPTDDPD 266

[Close]

BLAST of Cp4.1LG11g11400 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 43  ASDSLVADLPTV-VADV-------CAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVAN 102
           AS S +  LP V ++D        CAVC E F  + + +++PC H++H+ CI  WL++ N
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRN 234

Query: 103 CCPLCRCLIAGQP 108
            CP+CR  +  +P
Sbjct: 235 SCPVCRFELPSEP 247

[Close]

BLAST of Cp4.1LG11g11400 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-10
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 42  SASDSL----VADLPTVVADVCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCP 101
           SA +SL    ++D  T     CAVC E F    +G+++PC H++H  CI  WL++ N CP
Sbjct: 194 SAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCP 253

Query: 102 LCRCLIAGQP 108
           +CR  +   P
Sbjct: 254 VCRFELPSDP 263

[Close]

BLAST of Cp4.1LG11g11400 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-10
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 58  VCAVCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCR 101
           +CAVC EDF   E  +++PC H+YH  CI  WL+  N CPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g11400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPN7	1.4e-09	38.16	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q940T5	4.0e-09	36.99	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ...	[more]
P0CH30	4.0e-09	43.14	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q9SNB6	8.9e-09	38.57	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
Q9VHI7	1.2e-08	45.65	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]

BLAST of Cp4.1LG11g11400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545409.1	1.87e-82	100.00	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946863.1	7.64e-82	99.15	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
KAG6599476.1	2.19e-81	98.31	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]
KAG7030453.1	7.04e-81	98.31	E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038877422.1	5.07e-66	83.05	E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG11g11400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G511	3.70e-82	99.15	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A0A0LKR7	3.21e-62	78.81	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 P...	[more]
A0A5A7V2P4	3.72e-59	77.31	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DZX3	3.72e-59	77.31	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
A0A6J1DM93	3.26e-58	77.39	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Cp4.1LG11g11400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68180.1	8.8e-12	48.15	RING/U-box superfamily protein	[more]
AT3G19950.1	9.7e-11	38.16	RING/U-box superfamily protein	[more]
AT5G59550.1	2.8e-10	36.99	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G46620.1	6.3e-10	38.57	zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G60080.1	6.3e-10	53.49	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 2.5E-7 score: 40.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 1.1E-11 score: 44.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.784338
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..113 e-value: 6.7E-17 score: 62.4
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 21..103
None	No IPR available	PANTHER	PTHR15710:SF74	E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE	coord: 21..103
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g11400.1	Cp4.1LG11g11400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity