Cp4.1LG11g10860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCTTTGATTTTAGGAAGAAGAACAAGAACAAGAATATGAACTGGTCGAGAGGTGATTGGATGTGTGGTGCTTGTGAACACGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGGTACTTAAAATATGGAGGCCCTCACTCCGAGTACCCAACTGCACATGAACATGGTATCAAAACAGAAGAAGCTTTGGCGGGAGATTGGTATTGCAAATGTGGAGCTCATAATTATGCTACCCGATCAAGCTGCTATAGATGTCATGCATATAAGAGTCTTGATCTTGGTGCCTTTCCTGGTTGGAAATCGGGGGATTGGATCTGCACAAGGTATGTATACACGACCAACCACTGTTATCGAATAGGTTTCAATTATGTTTCTAAACTTCAAACTGGTTCGAAAAAGTTATTCTTTACTCAAACAAAGATTGAAATTAACCCAACAGCTGAACGGGTAAAAATTGAAAGACTTAATGATATTATTTAGGAGTGTTCGTGGGTTAGGTCAAGTTGAGTTGAGACATCTTTTTTAAAACTAATCCAATTGTTCGAGTTTAAATTTTTTCATTTTGGCATAGCGGGAGCGCGCCCTTGATAATTGCGTCGTTGTTCTTGGACTCTGAGGGCTCTCGTCACAAGGATAACTAATTTATAAAATTTTCATTTATTTGAGTTCGAAACCCAACCCAAACCGTATGAGTTGGGTCGGACTGATCTCGTTTTTTAGGTCATCGAATATTTTAAACAACCCTGATATTATTTATAACGATATGCCATTTTATTCATCCAAAAAAACGACGAGTAATGATATTACGTTGAAATTTATGCAGATGTGAAACCCACAATTATGCTAGGAGAATGGAATGCTACCGATGCAAAACTAGAAGAAGTT GCTTTGATTTTAGGAAGAAGAACAAGAACAAGAATATGAACTGGTCGAGAGGTGATTGGATGTGTGGTGCTTGTGAACACGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGGTACTTAAAATATGGAGGCCCTCACTCCGAGTACCCAACTGCACATGAACATGGTATCAAAACAGAAGAAGCTTTGGCGGGAGATTGGTATTGCAAATGTGGAGCTCATAATTATGCTACCCGATCAAGCTGCTATAGATGTCATGCATATAAGAGTCTTGATCTTGGTGCCTTTCCTGATGTGAAACCCACAATTATGCTAGGAGAATGGAATGCTACCGATGCAAAACTAGAAGAAGTT ATGAACTGGTCGAGAGGTGATTGGATGTGTGGTGCTTGTGAACACGTAAACTTCAAGAAAAGAGAAGCTTGTCAAAGATGTGGGTACTTAAAATATGGAGGCCCTCACTCCGAGTACCCAACTGCACATGAACATGGTATCAAAACAGAAGAAGCTTTGGCGGGAGATTGGTATTGCAAATGTGGAGCTCATAATTATGCTACCCGATCAAGCTGCTATAGATGTCATGCATATAAGAGTCTTGATCTTGGTGCCTTTCCTGATGTGAAACCCACAATTATGCTAGGAGAATGGAATGCTACCGATGCAAAACTAGAAGAAGTT MNWSRGDWMCGACEHVNFKKREACQRCGYLKYGGPHSEYPTAHEHGIKTEEALAGDWYCKCGAHNYATRSSCYRCHAYKSLDLGAFPDVKPTIMLGEWNATDAKLEEV Homology
BLAST of Cp4.1LG11g10860 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05 Identity = 33/88 (37.50%), Postives = 43/88 (48.86%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2) HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05 Identity = 32/88 (36.36%), Postives = 42/88 (47.73%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2) HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05 Identity = 32/88 (36.36%), Postives = 42/88 (47.73%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05 Identity = 32/88 (36.36%), Postives = 42/88 (47.73%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy Swiss-Prot
Match: Q5R580 (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ZRANB2 PE=2 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05 Identity = 32/88 (36.36%), Postives = 42/88 (47.73%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. NCBI nr
Match: XP_023546964.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 205 bits (522), Expect = 3.07e-66 Identity = 91/101 (90.10%), Postives = 92/101 (91.09%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. NCBI nr
Match: XP_022946588.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita moschata] >XP_022946589.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita moschata]) HSP 1 Score: 200 bits (508), Expect = 3.68e-64 Identity = 88/101 (87.13%), Postives = 90/101 (89.11%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. NCBI nr
Match: XP_022999274.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]) HSP 1 Score: 195 bits (496), Expect = 2.83e-62 Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. NCBI nr
Match: KAG6599412.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 200 bits (508), Expect = 7.41e-59 Identity = 88/101 (87.13%), Postives = 90/101 (89.11%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. NCBI nr
Match: XP_038890693.1 (zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]) HSP 1 Score: 152 bits (384), Expect = 3.64e-45 Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy TrEMBL
Match: A0A6J1G490 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111450606 PE=4 SV=1) HSP 1 Score: 200 bits (508), Expect = 1.78e-64 Identity = 88/101 (87.13%), Postives = 90/101 (89.11%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy TrEMBL
Match: A0A6J1KGK8 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493695 PE=4 SV=1) HSP 1 Score: 195 bits (496), Expect = 1.37e-62 Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy TrEMBL
Match: A0A6J1HSH3 (zinc finger Ran-binding domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111465727 PE=4 SV=1) HSP 1 Score: 147 bits (372), Expect = 1.05e-43 Identity = 68/98 (69.39%), Postives = 73/98 (74.49%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy TrEMBL
Match: A0A0A0LIX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1) HSP 1 Score: 146 bits (369), Expect = 5.21e-43 Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. ExPASy TrEMBL
Match: A0A1S3C6B6 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103497392 PE=4 SV=1) HSP 1 Score: 146 bits (368), Expect = 5.61e-43 Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 105.1 bits (261), Expect = 3.5e-23 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14 Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein ) HSP 1 Score: 70.5 bits (171), Expect = 9.5e-13 Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 0
BLAST of Cp4.1LG11g10860 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein ) HSP 1 Score: 60.5 bits (145), Expect = 9.8e-10 Identity = 33/109 (30.28%), Postives = 47/109 (43.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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