Cp4.1LG11g10710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g10710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal protein L31
Location	Cp4.1LG11: 8979666 .. 8981742 (-)
RNA-Seq Expression	Cp4.1LG11g10710
Synteny	Cp4.1LG11g10710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACCAAAAAAAAAATAAAAAATAAAAAATAAAAAATCCTACCCTAATAGATCACAACCAAACTGATCGGACTATGATTTGAAGTTGACGAAAATACCCTCACTCCATCAAAATGTGTTGCCATTCTGGTTGAGGACATCAGAGTCATTGAACAACTCGCTTCATCTTCTACCTTCTCCGCCGCCCGTCGAGGGTAAAGAGAGCTTCTTCTTACAATCTCCGGTATCTGCTTCCGCTTCCGCTTCCGCTTCATTCAGCGACTCAAGGTACTGTCTCTCTCTCTCCAATCTTCTTTCTTGCTTGAGATGTGGTGGATTTGGCGAGATTGGCCATCTCTTTACTCGTTCTACTGATTCAACCTAAATTGTAAATGCTATCTCGTTGATGTTTTCGGTAACGGACGTAGTTAAAAAATCACAGCCTTGGTGGTGGAATTTGACACTGCCCTGTGGTTGTTAATATCTGATTTTTGTGAATGATTTTCTCTAGGGTTACCTATTTGTATGTTCGATCGAGAAATTTATGTTTCATCTAAATTAATCCTTTTACTTGCTGAGAAAGTATCTGCACATCATTACACGGCCAAGTTAGGGTTTAGGATCGTGAAGTATTTAACAGTCGCATTGTGGTGGTGGTGATTTTCAAGTTTGATACTCTTTTGCGTTATGATTATTGAACACTGTGCAATGCTCACCAGCCGTTTGATGAAATTCTTCTATGAACGGTAGATTTGTACTTGTTCATCCTAGATCATTCCTTCTTAGTGTGGCTATCGCTTTCTTAGTTCTGCACTTNTCGCATTGTGGTGGTGGTGATTTTCAAGTTTGATACTCTTTTGCGTTATGATTATTGAACACTGTGCAATGCTCACCAGCCGTTTGATGAAATTCTTCTATGAACGGTAGATTTGTACTTGTTCATCCTAGATCATTCCTTCTTAGTGTGGCTATCGCTTTCTTAGTTCTGCACTTTTGGTGTGACGAACGTTGAACTTTGCATAGTGCCTGCCAATTTTTGATGAAATTCTTCAATAAAATGGTATGTTCGAACTTGCCACACTTCTTCATCTCCCTTCAATGTGGCTGTCACTTCTGAATTTCTACTCATTGGGGATGATGAACATTGAACATTACACAGCCCACCAAATGTTTGACGAAATTTCTCTAGTAAGTGGTATAGCTGCATTGTACATGTTCATCGTTCGTAGCTTCCCCACGTATAAACAGGACAAGGTTGTCGATTGAGAATGGAAACTTGTGGGTTTTGATTCAAATGCAGCTTTACTGAGATAGTTCTTTTTCTGGAAACTTTTAAGTTTAGGAACTAAACTATTTTCTCTAGAAGCTAAAGTACTAATTATGATTTCAGATCTATACAATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTGAGAGCAAGGCGTCAATTAGCTGAAAGTGTTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGAGGTTCAATGCAAAGCACAAGGATCAGCTGTTCACTCGGATCATTATGGATTCGTTTTGTGAGTTCTAGGAATTTAAAGTTCCCTTCTATTCAATGGAGTCGATCCCTTTTCATAGTCTAGTATCTTACAAAACACCGAGTTAATTTTATAATGGTTTTCGTATGCTCTTACCATTAGATATATCGAATCTGCATTCCTATCTTCTGTTCAATAAATGTTATCATTTTCCACCTTATTTATCTAATTGTGTTTTCGAGCTCACCGGGCTTGTTGTGCTGCTTAAAGCCTATTAGAATAGTGGAGTTGTTGACTTATGTATACTCTAGTTGTTAGGTATTTAATATCTTCCCTAGCCCCTATGAATTTTAGGTTTGAATCCCTCCTTAAAGAAAGAAGAAAAGTTGGGTATTCTGATGGACTACTTTGGTGTCTCAAGAGGGAGAAATTATTGAGGCTGGAACAATGTAGTTGGGAG

mRNA sequence

TCACCAAAAAAAAAATAAAAAATAAAAAATAAAAAATCCTACCCTAATAGATCACAACCAAACTGATCGGACTATGATTTGAAGTTGACGAAAATACCCTCACTCCATCAAAATGTGTTGCCATTCTGGTTGAGGACATCAGAGTCATTGAACAACTCGCTTCATCTTCTACCTTCTCCGCCGCCCGTCGAGGGTAAAGAGAGCTTCTTCTTACAATCTCCGGTATCTGCTTCCGCTTCCGCTTCCGCTTCATTCAGCGACTCAAGCTTCCCCACGTATAAACAGGACAAGATCTATACAATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTGAGAGCAAGGCGTCAATTAGCTGAAAGTGTTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGAGGTTCAATGCAAAGCACAAGGATCAGCTGTTCACTCGGATCATTATGGATTCGTTTTGTGAGTTCTAGGAATTTAAAGTTCCCTTCTATTCAATGGAGTCGATCCCTTTTCATAGTCTAGTATCTTACAAAACACCGAGTTAATTTTATAATGGTTTTCGTATGCTCTTACCATTAGATATATCGAATCTGCATTCCTATCTTCTGTTCAATAAATGTTATCATTTTCCACCTTATTTATCTAATTGTGTTTTCGAGCTCACCGGGCTTGTTGTGCTGCTTAAAGCCTATTAGAATAGTGGAGTTGTTGACTTATGTATACTCTAGTTGTTAGGTATTTAATATCTTCCCTAGCCCCTATGAATTTTAGGTTTGAATCCCTCCTTAAAGAAAGAAGAAAAGTTGGGTATTCTGATGGACTACTTTGGTGTCTCAAGAGGGAGAAATTATTGAGGCTGGAACAATGTAGTTGGGAG

Coding sequence (CDS)

ATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTGAGAGCAAGGCGTCAATTAGCTGAAAGTGTTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGA

Protein sequence

MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEKDIVENDESVEKAEK

Homology

[Close]

BLAST of Cp4.1LG11g10710 vs. NCBI nr
Match: XP_023547264.1 (uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146 bits (368), Expect = 5.12e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60

Query: 61 DIVENDESVEKAEK 74
          DIVENDESVEKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Cp4.1LG11g10710 vs. NCBI nr
Match: XP_022946219.1 (uncharacterized protein LOC111450371 [Cucurbita moschata])

HSP 1 Score: 144 bits (363), Expect = 2.97e-43
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQLAES+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 DIVENDESVEKAEK 74
          DIVENDESVEKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Cp4.1LG11g10710 vs. NCBI nr
Match: KAG7030387.1 (hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (367), Expect = 3.83e-43
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAES+GQIAKFKRRYEK
Sbjct: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115

Query: 61  DIVENDESVEKAEK 74
           DIVENDESVEKAEK
Sbjct: 116 DIVENDESVEKAEK 129

[Close]

BLAST of Cp4.1LG11g10710 vs. NCBI nr
Match: XP_022999184.1 (uncharacterized protein LOC111493644 [Cucurbita maxima])

HSP 1 Score: 141 bits (356), Expect = 3.48e-42
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVY  RARRQLAESVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 61 DIVENDESVEKAEK 74
          DIVENDESVEKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Cp4.1LG11g10710 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 127 bits (320), Expect = 9.97e-37
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RA+RQ+AESVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 DIVENDESVEK 71
           I EN E+ EK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of Cp4.1LG11g10710 vs. ExPASy TrEMBL
Match: A0A6J1G367 (uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC111450371 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 1.44e-43
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQLAES+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 DIVENDESVEKAEK 74
          DIVENDESVEKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Cp4.1LG11g10710 vs. ExPASy TrEMBL
Match: A0A6J1KGB8 (uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 1.68e-42
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVY  RARRQLAESVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 61 DIVENDESVEKAEK 74
          DIVENDESVEKAEK
Sbjct: 61 DIVENDESVEKAEK 74

[Close]

BLAST of Cp4.1LG11g10710 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 4.83e-37
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RA+RQ+AESVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 DIVENDESVEK 71
           I EN E+ EK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of Cp4.1LG11g10710 vs. ExPASy TrEMBL
Match: F6GUK5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00680 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 2.90e-33
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IH VGKVYHLRARRQ+A+SVGQIAKFKRRYE+
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHSVGKVYHLRARRQMAQSVGQIAKFKRRYEQ 60

Query: 61 DIVENDE 67
             EN+E
Sbjct: 61 KNEENEE 67

[Close]

BLAST of Cp4.1LG11g10710 vs. ExPASy TrEMBL
Match: A0A438EM09 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_076149 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 2.90e-33
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IH VGKVYHLRARRQ+A+SVGQIAKFKRRYE+
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHSVGKVYHLRARRQMAQSVGQIAKFKRRYEQ 60

Query: 61 DIVENDE 67
             EN+E
Sbjct: 61 KNEENEE 67

[Close]

BLAST of Cp4.1LG11g10710 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 109.8 bits (273), Expect = 9.7e-25
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IHHVGKVYH  A+RQ+A+S+GQIAKFKRR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 61 DIVENDESVEKAEK 75
              N++  E AE+
Sbjct: 61 ----NEQEAEAAEE 68

[Close]

BLAST of Cp4.1LG11g10710 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 109.8 bits (273), Expect = 9.7e-25
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IHHVGKVYH  A+RQ+A+S+GQIAKFKRR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 61 DIVENDESVEKAEK 75
              N++  E AE+
Sbjct: 61 ----NEQEAEAAEE 68

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g10710 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g10710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547264.1	5.12e-44	100.00	uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo]	[more]
XP_022946219.1	2.97e-43	97.30	uncharacterized protein LOC111450371 [Cucurbita moschata]	[more]
KAG7030387.1	3.83e-43	98.65	hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022999184.1	3.48e-42	97.30	uncharacterized protein LOC111493644 [Cucurbita maxima]	[more]
XP_022143125.1	9.97e-37	88.73	uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha...	[more]

BLAST of Cp4.1LG11g10710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G367	1.44e-43	97.30	uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1KGB8	1.68e-42	97.30	uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644...	[more]
A0A6J1CPB3	4.83e-37	88.73	uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
F6GUK5	2.90e-33	86.57	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00680 PE=4 SV=...	[more]
A0A438EM09	2.90e-33	86.57	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_076149 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g10710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55125.1	9.7e-25	72.97	Ribosomal protein L31	[more]
AT5G55125.2	9.7e-25	72.97	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..74
None	No IPR available	PANTHER	PTHR37264	RIBOSOMAL PROTEIN L31	coord: 1..68
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g10710.1	Cp4.1LG11g10710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome