Cp4.1LG11g10620 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g10620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontranscription factor MYB82
LocationCp4.1LG11: 8851743 .. 8852770 (-)
RNA-Seq ExpressionCp4.1LG11g10620
SyntenyCp4.1LG11g10620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGAGTAAAGAGATGAAGCAACAGCTGAAGAAAAATTTGTGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGCGAAGGGAATTGGGCGACTGTCTCCCAGGAATCAGGTAAATTTGGCCACAAAAATGTCTAATAACCAATATAAAATGTGCCAGCCATTTCTATATCCGCTACTATATTCATCTTTCTCAGAACTCTATAGCACGATGGATGGAGTTTTTAAAAATGTTACACATATATCAGGAATTAGAGTTTTCATTCATGTGTGAGTGTGTGTGAGCTTTCCTCCATTGCCTCTCAGGTTTGATGCGAGGTGGGAAAAGCTGCAGGCTAAGATGGAAGAATTACCTCAGGCCTAATATAAAACGTGGGGAGATGTCCAAAGAGGAAGAGGATCTAATTATCCGTATGCATAAACTTTTAGGCAACAGGTCAGTTTGTATTGCTTTAACCTCTCAAAAGCTTAATCCATACTTACAGTAAAGAGAGATAACTTGCTGAATGTTTGGATATTTTCAACGTGTTACTTCTTGAATCAGATGGTCATTGATTGCTGGTCGGCTTCCTGGTCGAACTGATAACGAGGTGAAGAACTACTGGAATACCCATTTGAACAAGAATGGCCTGCAAGATAAAAGAAAAGCTAATGACTCAAACAGCCACAAGAAAAATGACGACGACAACGACGATGATGTGAATAATAAGAAGCAGAAGAAAGTTATCAATCAGACTTGTTATCCTCAGCCACCAATATGCATTGACAACGGGAAAAATTTGGCTCATGATACACAGAGAAGAAACCAGGAAGAGAACAGAGAAGTTACAGATCCTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTCTCCAATAGTACCTGCAAATGACGCGACATTTAATTTTGACGACGAGCCTTACTTTGACCACCTCGATCCCTTCTTCCTGTTAGAAGCATTTGGATGCAGTAGTGTTCATGCATCACTGGATAACATGTAA

mRNA sequence

ATGGAGGAGAGTAAAGAGATGAAGCAACAGCTGAAGAAAAATTTGTGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGCGAAGGGAATTGGGCGACTGTCTCCCAGGAATCAGGTAAATTTGGCCACAAAAATAGAAGAAACCAGGAAGAGAACAGAGAAGTTACAGATCCTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTCTCCAATAGTACCTGCAAATGACGCGACATTTAATTTTGACGACGAGCCTTACTTTGACCACCTCGATCCCTTCTTCCTGTTAGAAGCATTTGGATGCAGTAGTGTTCATGCATCACTGGATAACATGTAA

Coding sequence (CDS)

ATGGAGGAGAGTAAAGAGATGAAGCAACAGCTGAAGAAAAATTTGTGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGCGAAGGGAATTGGGCGACTGTCTCCCAGGAATCAGGTAAATTTGGCCACAAAAATAGAAGAAACCAGGAAGAGAACAGAGAAGTTACAGATCCTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTCTCCAATAGTACCTGCAAATGACGCGACATTTAATTTTGACGACGAGCCTTACTTTGACCACCTCGATCCCTTCTTCCTGTTAGAAGCATTTGGATGCAGTAGTGTTCATGCATCACTGGATAACATGTAA

Protein sequence

MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKFGHKNRRNQEENREVTDPWNMDDITSSHYNINSPIVPANDATFNFDDEPYFDHLDPFFLLEAFGCSSVHASLDNM
Homology
BLAST of Cp4.1LG11g10620 vs. ExPASy Swiss-Prot
Match: Q9LTF7 (Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 5  KEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG-KFGHKNRRNQEEN 58
          +E K  +K+ LWKPEED+IL++YVETHGEGNWA +S+ SG K G K+ R + +N
Sbjct: 6  EEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKN 59

BLAST of Cp4.1LG11g10620 vs. ExPASy Swiss-Prot
Match: Q9SPG3 (Transcription factor MYB26 OS=Arabidopsis thaliana OX=3702 GN=MYB26 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.9e-04
Identity = 18/41 (43.90%), Postives = 29/41 (70.73%), Query Frame = 0

Query: 8  KQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKFGH 49
          KQ++K+ LW PEED  L NY+ ++G G W++V + +G + H
Sbjct: 9  KQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTH 49

BLAST of Cp4.1LG11g10620 vs. ExPASy Swiss-Prot
Match: Q8GYP5 (Transcription factor MYB60 OS=Arabidopsis thaliana OX=3702 GN=MYB60 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.7e-04
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0

Query: 11 LKKNLWKPEEDLILRNYVETHGEGNWATVSQESG 45
          +KK  W PEED+IL +Y++ HG GNW +V   +G
Sbjct: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG 45

BLAST of Cp4.1LG11g10620 vs. NCBI nr
Match: XP_023545990.1 (transcription factor MYB82 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185 bits (470), Expect = 1.74e-56
Identity = 116/241 (48.13%), Postives = 116/241 (48.13%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKF-------------- 60
           MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. NCBI nr
Match: XP_022946431.1 (transcription factor MYB82 [Cucurbita moschata])

HSP 1 Score: 181 bits (460), Expect = 5.72e-55
Identity = 114/241 (47.30%), Postives = 115/241 (47.72%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKF-------------- 60
           MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. NCBI nr
Match: KAG7030370.1 (Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 1.63e-54
Identity = 114/241 (47.30%), Postives = 115/241 (47.72%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKF-------------- 60
           MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. NCBI nr
Match: KAG6599384.1 (Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180 bits (457), Expect = 2.32e-54
Identity = 114/241 (47.30%), Postives = 115/241 (47.72%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKF-------------- 60
           MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 13  MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 72

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 73  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 132

BLAST of Cp4.1LG11g10620 vs. NCBI nr
Match: XP_022999279.1 (transcription factor MYB82 [Cucurbita maxima])

HSP 1 Score: 177 bits (450), Expect = 1.87e-53
Identity = 115/241 (47.72%), Postives = 116/241 (48.13%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG---------------- 60
           MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  ----KFG-------------HK-------------------------------------- 120
               K G             HK                                      
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. ExPASy TrEMBL
Match: A0A0A0LF88 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G007440 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 4.50e-59
Identity = 103/163 (63.19%), Postives = 108/163 (66.26%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKFGH---KN------- 60
           MEESK MKQQ KKNLWKPEEDLILR+YVETHGEGNWA VSQES    +   KN       
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDLILRSYVETHGEGNWAIVSQESANNSNSCKKNDDNNSDD 60

Query: 61  ---------------------------------RRNQEENREVTDPWNMDDITSSHYNIN 120
                                            RRNQEENRE  DPWNMDDITSSHYNIN
Sbjct: 61  GNNKKQKKVINQIYYPQPPICSDNGTDLAHDIQRRNQEENREKQDPWNMDDITSSHYNIN 120

BLAST of Cp4.1LG11g10620 vs. ExPASy TrEMBL
Match: A0A6J1G3P0 (transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV=1)

HSP 1 Score: 181 bits (460), Expect = 2.77e-55
Identity = 114/241 (47.30%), Postives = 115/241 (47.72%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKF-------------- 60
           MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. ExPASy TrEMBL
Match: A0A6J1KGL3 (transcription factor MYB82 OS=Cucurbita maxima OX=3661 GN=LOC111493699 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 9.06e-54
Identity = 115/241 (47.72%), Postives = 116/241 (48.13%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG---------------- 60
           MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  ----KFG-------------HK-------------------------------------- 120
               K G             HK                                      
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. ExPASy TrEMBL
Match: A0A6J1FGK0 (transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 3.32e-48
Identity = 107/238 (44.96%), Postives = 113/238 (47.48%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG---------------- 60
           MEESK MKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQESG                
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  ----KFG-------------HK-------------------------------------- 120
               K G             HK                                      
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. ExPASy TrEMBL
Match: A0A5D3BGT2 (Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00730 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 1.08e-44
Identity = 102/241 (42.32%), Postives = 108/241 (44.81%), Query Frame = 0

Query: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG---------------- 60
           MEESK MKQQ KKNLWKPEED ILR+YVETHGEGNWATVSQESG                
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQESGLMRGAKSCRLRWKNYL 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

BLAST of Cp4.1LG11g10620 vs. TAIR 10
Match: AT5G52600.1 (myb domain protein 82 )

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0

Query: 5  KEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG-KFGHKNRRNQEEN 58
          +E K  +K+ LWKPEED+IL++YVETHGEGNWA +S+ SG K G K+ R + +N
Sbjct: 6  EEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKN 59

BLAST of Cp4.1LG11g10620 vs. TAIR 10
Match: AT3G13890.1 (myb domain protein 26 )

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05
Identity = 18/41 (43.90%), Postives = 29/41 (70.73%), Query Frame = 0

Query: 8  KQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGKFGH 49
          KQ++K+ LW PEED  L NY+ ++G G W++V + +G + H
Sbjct: 9  KQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTH 49

BLAST of Cp4.1LG11g10620 vs. TAIR 10
Match: AT1G74650.1 (myb domain protein 31 )

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 8  KQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG 45
          K ++KK  W PEED+IL +Y++ HG GNW +V   +G
Sbjct: 9  KIEVKKGPWTPEEDIILVSYIQQHGPGNWRSVPANTG 45

BLAST of Cp4.1LG11g10620 vs. TAIR 10
Match: AT1G08810.1 (myb domain protein 60 )

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0

Query: 11 LKKNLWKPEEDLILRNYVETHGEGNWATVSQESG 45
          +KK  W PEED+IL +Y++ HG GNW +V   +G
Sbjct: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG 45

BLAST of Cp4.1LG11g10620 vs. TAIR 10
Match: AT1G57560.1 (myb domain protein 50 )

HSP 1 Score: 44.3 bits (103), Expect = 8.1e-05
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 0

Query: 8  KQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESG 45
          KQ+L+K LW PEED  L NY+  HG G W++V + +G
Sbjct: 9  KQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAG 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LTF71.2e-0857.41Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1[more]
Q9SPG33.9e-0443.90Transcription factor MYB26 OS=Arabidopsis thaliana OX=3702 GN=MYB26 PE=2 SV=1[more]
Q8GYP58.7e-0450.00Transcription factor MYB60 OS=Arabidopsis thaliana OX=3702 GN=MYB60 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_023545990.11.74e-5648.13transcription factor MYB82 [Cucurbita pepo subsp. pepo][more]
XP_022946431.15.72e-5547.30transcription factor MYB82 [Cucurbita moschata][more]
KAG7030370.11.63e-5447.30Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6599384.12.32e-5447.30Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022999279.11.87e-5347.72transcription factor MYB82 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A0A0LF884.50e-5963.19SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G007440 PE=4 S... [more]
A0A6J1G3P02.77e-5547.30transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV... [more]
A0A6J1KGL39.06e-5447.72transcription factor MYB82 OS=Cucurbita maxima OX=3661 GN=LOC111493699 PE=4 SV=1[more]
A0A6J1FGK03.32e-4844.96transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4... [more]
A0A5D3BGT21.08e-4442.32Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
Match NameE-valueIdentityDescription
AT5G52600.18.4e-1057.41myb domain protein 82 [more]
AT3G13890.12.8e-0543.90myb domain protein 26 [more]
AT1G74650.16.2e-0548.65myb domain protein 31 [more]
AT1G08810.16.2e-0550.00myb domain protein 60 [more]
AT1G57560.18.1e-0551.35myb domain protein 50 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 4..67
e-value: 1.7E-9
score: 39.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..66
NoneNo IPR availablePANTHERPTHR47999TRANSCRIPTION FACTOR MYB8-RELATED-RELATEDcoord: 4..44
NoneNo IPR availablePANTHERPTHR47999:SF21TUBER-SPECIFIC AND SUCROSE-RESPONSIVE ELEMENT BINDING FACTORcoord: 4..44
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..44
e-value: 1.1E-6
score: 28.8
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 8..44
score: 10.746422
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 8..65
score: 6.829499
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 16..45
e-value: 1.63127E-5
score: 37.555
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 8..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g10620.1Cp4.1LG11g10620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity