Cp4.1LG11g10010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g10010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG11: 8475866 .. 8476201 (+)
RNA-Seq ExpressionCp4.1LG11g10010
SyntenyCp4.1LG11g10010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTTCTTTTATGAACACGGCGGCGTTTCTTTTCATTTTTCTCTGTGTTTTCCACATGTCGGCGGCGAGGGTCATGACCGGAGAGCGGTGGCTTCCGGCACCGAGGGTGCCCATGGCGATGCTGCGAGGTGCCGTGCCTAGTTCCAGTAGGAATCCATGTTCGTTTATTCCGGGGTTCAGCCGTGGCCGATGTACGTTGAGCGAGGCGGACGACGGTGCCGCCGCTGTCCACGGTGGCTCCTCCGCCTTATCTCGGCTGAATGCTGATGGGTTTGCAGCGGCTTCCATGGCTAACAAAACCCAGAAGAAAGATCCTTCCTTGAGGCCTTGA

mRNA sequence

ATGGGTTTTTCTTTTATGAACACGGCGGCGTTTCTTTTCATTTTTCTCTGTGTTTTCCACATGTCGGCGGCGAGGGTCATGACCGGAGAGCGGTGGCTTCCGGCACCGAGGGTGCCCATGGCGATGCTGCGAGGTGCCGTGCCTAGTTCCAGTAGGAATCCATGTTCGTTTATTCCGGGGTTCAGCCGTGGCCGATGTACGTTGAGCGAGGCGGACGACGGTGCCGCCGCTGTCCACGGTGGCTCCTCCGCCTTATCTCGGCTGAATGCTGATGGGTTTGCAGCGGCTTCCATGGCTAACAAAACCCAGAAGAAAGATCCTTCCTTGAGGCCTTGA

Coding sequence (CDS)

ATGGGTTTTTCTTTTATGAACACGGCGGCGTTTCTTTTCATTTTTCTCTGTGTTTTCCACATGTCGGCGGCGAGGGTCATGACCGGAGAGCGGTGGCTTCCGGCACCGAGGGTGCCCATGGCGATGCTGCGAGGTGCCGTGCCTAGTTCCAGTAGGAATCCATGTTCGTTTATTCCGGGGTTCAGCCGTGGCCGATGTACGTTGAGCGAGGCGGACGACGGTGCCGCCGCTGTCCACGGTGGCTCCTCCGCCTTATCTCGGCTGAATGCTGATGGGTTTGCAGCGGCTTCCATGGCTAACAAAACCCAGAAGAAAGATCCTTCCTTGAGGCCTTGA

Protein sequence

MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSLRP
Homology
BLAST of Cp4.1LG11g10010 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (443), Expect = 1.41e-54
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 21  MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 80
           MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG
Sbjct: 1   MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 60

Query: 81  GSSALSRLNADGFAAASMANKTQKKDPSLRP 111
           GSSALS LNADGFAAASMANKTQKKDPSLRP
Sbjct: 61  GSSALSGLNADGFAAASMANKTQKKDPSLRP 91

BLAST of Cp4.1LG11g10010 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 153 bits (386), Expect = 1.28e-45
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 1   MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPG 60
           M FS M T AFLFIFL +  MSAARV+ GERWLP   VP AMLRG VPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSL 109
           FSRGRCTLSE D+G A+V GGSSA   LNADGFAAAS+ N+TQK+D S+
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

BLAST of Cp4.1LG11g10010 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 1.68e-42
Identity = 78/109 (71.56%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 1   MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPG 60
           M FS + T AFLFIFL +F +S  R      WLP  RVP+A+LRG VPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGR------WLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSL 109
           FSRGRCTLSE DDGAA+VHGGSSA   LNADGFAAASM N+TQK+D SL
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSL 103

BLAST of Cp4.1LG11g10010 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129 bits (323), Expect = 5.16e-36
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 1   MGFSFMNT--AAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFI 60
           M FS M T  AAF+FI LC+FH+SAARV+TGERW P   V   MLRG VP S RNPCSFI
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGLVPPSGRNPCSFI 60

Query: 61  PGFSRGRCTLSEADD--GAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSLRP 111
           PG  RGRCTLSE +D  G     GGSSA   +N DGF+AA+M N TQK+DPSLRP
Sbjct: 61  PGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSLRP 112

BLAST of Cp4.1LG11g10010 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 59.3 bits (142), Expect = 1.62e-08
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 0

Query: 22  SAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHGG 81
           +A R++  E+WL    +  ++ RG VP S  NPC+FIPG +RGRCTLSE D         
Sbjct: 32  AAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFIPGRNRGRCTLSEMDVAGQFPRAP 91

Query: 82  SSALSRLNADGFAAA---SMANKTQKKDPS 108
           ++A   +  D  A     S AN+TQK+D S
Sbjct: 92  AAAFPDIVVDFGAVTAGNSGANETQKQDSS 121

BLAST of Cp4.1LG11g10010 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 6.18e-46
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 0

Query: 1   MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPG 60
           M FS M T AFLFIFL +  MSAARV+ GERWLP   VP AMLRG VPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSL 109
           FSRGRCTLSE D+G A+V GGSSA   LNADGFAAAS+ N+TQK+D S+
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

BLAST of Cp4.1LG11g10010 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 8.14e-43
Identity = 78/109 (71.56%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 1   MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPG 60
           M FS + T AFLFIFL +F +S  R      WLP  RVP+A+LRG VPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGR------WLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSL 109
           FSRGRCTLSE DDGAA+VHGGSSA   LNADGFAAASM N+TQK+D SL
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSL 103

BLAST of Cp4.1LG11g10010 vs. ExPASy TrEMBL
Match: A0A5B6Z7Q1 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.80e-08
Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 12  LFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEA 71
           +F  LC   +SA R +  E+WL       ++ RG VPSS  NPC++IPG   GRCTL+E 
Sbjct: 53  IFSVLCFRQLSAMRPLEEEQWLKKGLHIQSLPRGPVPSSGSNPCTYIPGRGTGRCTLAEN 112

Query: 72  DDGAAAVHGGSSALSRLNADGF----AAASMANKTQKKDPS 108
           +   A  H   +         F    AAAS  N T+KKD S
Sbjct: 113 EMNFAGGHDNVAPAPPAAFPDFMVKFAAASKDNDTRKKDTS 153

BLAST of Cp4.1LG11g10010 vs. ExPASy TrEMBL
Match: A0A6J1K3A7 (uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.30e-07
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 12 LFIFLCVFHMSAARVMTGERWLPAPR-----VPMAML-RGAVPSSSRNPCSFIPGFSRGR 68
          LF  L    M AARVM+GE+W+ A +     +P+ +L R  VP S RNPCS IPG S GR
Sbjct: 15 LFTILLPNPMEAARVMSGEKWMKAKQDMAFVLPIQVLQRAPVPPSGRNPCSTIPGQSNGR 74

BLAST of Cp4.1LG11g10010 vs. ExPASy TrEMBL
Match: A0A2N9F903 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.97e-07
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 11  FLFIFLCVFHMSAA-RVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLS 70
           F+ +F+  FH + A R + GE WL        + RG V  S  NPC++IPG S GRCTLS
Sbjct: 4   FIMLFVLGFHEALAMRPLDGEPWLNKNLAMQTLQRGPVTPSGPNPCTYIPGRSHGRCTLS 63

Query: 71  EADDGAAAVHGGSSALSRLNADGFAAASMAN 100
           E D      H   +    + +  FAAAS+AN
Sbjct: 64  EMDVADHVAHAPPAFPDHVVS--FAAASIAN 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6599331.11.41e-5498.90hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN60782.11.28e-4573.39hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.11.68e-4271.56hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6586324.15.16e-3664.35hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.11.62e-0841.11uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
A0A0A0LJ846.18e-4673.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5A7VCY28.14e-4371.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5B6Z7Q15.80e-0839.60Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663... [more]
A0A6J1K3A71.30e-0752.38uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306... [more]
A0A2N9F9034.97e-0740.66Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 8..104
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 8..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g10010.1Cp4.1LG11g10010.1mRNA