Cp4.1LG11g09820 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g09820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S24
Location	Cp4.1LG11: 8234518 .. 8236457 (-)
RNA-Seq Expression	Cp4.1LG11g09820
Synteny	Cp4.1LG11g09820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAGCCCTCCAATGACTTTATTTACCAGCTAGGGTTTTGCAGCCTTCTTCTTCAAAATCGCAAATCAGGTAATCAGAGCAGCCGTTCCTCTGCCCCTTCGCCTTCTTTGAGCTTTTCATCCTCTTCGGAGCACCTCCAGCCATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGGAAGCAATTCGTGAGTTTTTCGGATCCTACTCGGCCGTTTTTGCTTTTAGCATTCATTTCGTTTTCGATTTCTGATTGGATTTGTTTCGGATTGATGCTTCGGCGTTTGATTCTTTTCTGCTGAACTTTACTTGGAACTGTACGATTTAACGTTTCTATATCCTTTTGAGGTTTTAGCTTGGACTTTGTTTGTTTGTGGATTCTAGATCGTTGAGTTGCATCTGTTTGACGCTGAAAATGTTTTGTTTAGTTTAAAACCCCAATGTCTTTAAGAAGTCTGAAGTTTTTGATTTCTTTATGATCTTGAGTTTAGTTTTTAGTGTTACTTCTCTAACTACCTTGAAAAATTGATTNGATGAAACTGTTTTGTTTAGTCTAAAACCCAATGTCTTTAAGAAGTCTGAAGTTTTTGATTTCTCTATGATCTTGAGTTTAGAGTTTTTAGTGTTACTTCTCTAACTACCTTGAAAAATTGATTTAGGGTTGCTGATTATGTATCTGGATAGCTCGGTGACTTCTTTTTGTTTTTTAACTATATAATTTTCTGATCTTGATACGAATGGAAGACGTTTTGAAGTCGTTTTTAACTTTTCTGTTTTCTGGTTAATGCAGGTAATTGATGTTCTTCACCCAGGCAGNGATACGAATGGAAAACGTTTTGAAGTCGTTTTTAACTTTTCTGTTTTCTGGTTAATGCAGGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGTAGTCCCTTTTTCAGTTCATTTGTTGTTTTTTCTTCTCTGTTATTTATGTTATGCACTCTTTTTAAATGCCTTCAAGATATATCACTCAATCCGAATGGAAACCACATGAATCCAAGCGTTTTTTTTAATTTTTTTTTTTTATGGTGCTCATAGTGTCTATGTTTCTATTATTTGATCTCAAGGCTGAACTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCAGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGGTAATTTACAGTCGCATTTCAAGCACAATTTCAATTATAATGCTCTGAAGTTTTGTTTTCCTCACTTAATGACATTACTCAAGCTGGACTTTTCCTTGTTCTGTCAGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGGTAAGTTATATGGCTAGTTGATAATGATCTTGAAATGATAGCTTGACCTTCATGTTAAACATTACCCCTAACCCTATCATTCATGTCTCTTCACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGAGATTGATTGCTGGGATTTTGTACCCATCACCAAGGATTATCTGCAGAATCATCGTGATCTCTTTTTAATAGTTTCCTTTTGACTCCTAGATCAAATTATGTTAATCAGTATTTTTGGTTGTTGATTACTAGTGATATGAAAACTTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACAGGAAATATACATTTCCTTGTGTTCCAAGTTTTTATCAGTTTTTCTACATTCAATTGTTGTTCTTAGATCTTCCAGAAAAAAAGATTATGAGCTTAAGCAAGCTTAACTCATGTTTGTTATTTAGTTTA

mRNA sequence

CCTAGCCCTCCAATGACTTTATTTACCAGCTAGGGTTTTGCAGCCTTCTTCTTCAAAATCGCAAATCAGGTAATCAGAGCAGCCGTTCCTCTGCCCCTTCGCCTTCTTTGAGCTTTTCATCCTCTTCGGAGCACCTCCAGCCATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGCTGAACTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCAGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGAGATTGATTGCTGGGATTTTGTACCCATCACCAAGGATTATCTGCAGAATCATCGTGATCTCTTTTTAATAGTTTCCTTTTGACTCCTAGATCAAATTATGTTAATCAGTATTTTTGGTTGTTGATTACTAGTGATATGAAAACTTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACAGGAAATATACATTTCCTTGTGTTCCAAGTTTTTATCAGTTTTTCTACATTCAATTGTTGTTCTTAGATCTTCCAGAAAAAAAGATTATGAGCTTAAGCAAGCTTAACTCATGTTTGTTATTTAGTTTA

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGCTGAACTGAAGGAGAAATTGGCCAGAATCTATGATGTGAAAGACCCAAATTCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGGTTCGGTTTAATCTATGATTCAGTTGAAAATGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-60
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 115/132 (87.12%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-39
Identity = 85/132 (64.39%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKLA++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-37
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-37
Identity = 87/132 (65.91%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: XP_022946610.1 (40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal protein S24-1 [Cucurbita pepo subsp. pepo] >KAG6599291.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030289.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260 bits (665), Expect = 2.49e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 1.02e-86
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: XP_022143165.1 (40S ribosomal protein S24-1 [Momordica charantia])

HSP 1 Score: 258 bits (659), Expect = 2.05e-86
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL+RIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: KAF7833558.1 (40S ribosomal protein S24-1-like [Senna tora])

HSP 1 Score: 258 bits (659), Expect = 2.05e-86
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLAR+YDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARMYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. NCBI nr
Match: XP_022999263.1 (40S ribosomal protein S24-1-like [Cucurbita maxima])

HSP 1 Score: 258 bits (658), Expect = 2.91e-86
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASD+AKAGKKK
Sbjct: 121 GVKKTKASDSAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy TrEMBL
Match: A0A6J1G4D5 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111450625 PE=3 SV=1)

HSP 1 Score: 260 bits (665), Expect = 1.21e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy TrEMBL
Match: A0A5D3D4C1 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001230 PE=3 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.92e-87
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy TrEMBL
Match: E5GBS0 (40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.92e-87
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy TrEMBL
Match: A0A1S3C1J8 (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.92e-87
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. ExPASy TrEMBL
Match: A0A6J1CN14 (40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV=1)

HSP 1 Score: 258 bits (659), Expect = 9.92e-87
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL+RIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 137
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Cp4.1LG11g09820 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-61
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Cp4.1LG11g09820 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 227.3 bits (578), Expect = 7.7e-60
Identity = 115/132 (87.12%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKDPN+IF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	2.0e-60	90.15	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	1.1e-58	87.12	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	3.3e-39	64.39	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	2.4e-37	65.91	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	2.4e-37	65.91	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g09820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946610.1	2.49e-87	100.00	40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal p...	[more]
XP_008455742.1	1.02e-86	98.54	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]
XP_022143165.1	2.05e-86	98.54	40S ribosomal protein S24-1 [Momordica charantia]	[more]
KAF7833558.1	2.05e-86	98.54	40S ribosomal protein S24-1-like [Senna tora]	[more]
XP_022999263.1	2.91e-86	98.54	40S ribosomal protein S24-1-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG11g09820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4D5	1.21e-87	100.00	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111450625 PE=3 SV=...	[more]
A0A5D3D4C1	4.92e-87	98.54	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GBS0	4.92e-87	98.54	40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3C1J8	4.92e-87	98.54	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103495842 PE=3 SV=1	[more]
A0A6J1CN14	9.92e-87	98.54	40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV...	[more]

BLAST of Cp4.1LG11g09820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	1.4e-61	90.15	Ribosomal protein S24e family protein	[more]
AT5G28060.1	7.7e-60	87.12	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 3.2E-36 score: 123.1
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.748049
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..132 e-value: 6.1E-60 score: 202.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09820.1	Cp4.1LG11g09820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome