Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATTTTCGATATGGTTTCTTTTGTCGCCCCGACAACAAGAACTTAGAACCACAACAGGAAGAAAAGAACACAACAAGCCATATCCCTGATCCCAAATACAAACCAGCTCATGTCGATGCCGGAGGAAGACGACTTCCGACCGTCGTTCTGCCCAGACCAAGGTATGTTACTACAACTGAGACATATACTGAAGAATTTTACTCAAATTCAAGGGATGGCTTTCAATATAGCCATACCAAGAACTCTGAACCAGTGAAGTCTTATGGACTTCACCATGATAAAGGGATTCGGCATCCAAGTCGCCCCGCTCTTAATCGCCCAACTGAGTTCAATAGACTCTTAGTCAAAGTCGAAATGGAAGAAGACCAGGTAAAACATGAAATGAGGATAAGTAAACCAATGAATGATATTGAGAAGGCTATAGAGTTCTTTAAAGAAGCTGTAAACCTTCCCTATTGCAAAAACAATGCTTGTCACGCACCAGATCATCCTAAGAAAGATGGCTACACAAAAACTATTGACAGCAACGAAGCAGCACGTCGGTTCGGGAACTTCGGCATACCACCTCCGGTGCCGAGTGCCAACGGAGCAACCATTAACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGTAACAGTGTGA
mRNA sequence
ATGGCCGATTTTCGATATGGTTTCTTTTGTCGCCCCGACAACAAGAACTTAGAACCACAACAGGAAGAAAAGAACACAACAAGCCATATCCCTGATCCCAAATACAAACCAGCTCATGTCGATGCCGGAGGAAGACGACTTCCGACCGTCGTTCTGCCCAGACCAAGGTATGTTACTACAACTGAGACATATACTGAAGAATTTTACTCAAATTCAAGGGATGGCTTTCAATATAGCCATACCAAGAACTCTGAACCAGTGAAGTCTTATGGACTTCACCATGATAAAGGGATTCGGCATCCAAGTCGCCCCGCTCTTAATCGCCCAACTGAGTTCAATAGACTCTTAGTCAAAGTCGAAATGGAAGAAGACCAGGTAAAACATGAAATGAGGATAAGTAAACCAATGAATGATATTGAGAAGGCTATAGAGTTCTTTAAAGAAGCTGTAAACCTTCCCTATTGCAAAAACAATGCTTGTCACGCACCAGATCATCCTAAGAAAGATGGCTACACAAAAACTATTGACAGCAACGAAGCAGCACGTCGGTTCGGGAACTTCGGCATACCACCTCCGGTGCCGAGTGCCAACGGAGCAACCATTAACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGTAACAGTGTGA
Coding sequence (CDS)
ATGGCCGATTTTCGATATGGTTTCTTTTGTCGCCCCGACAACAAGAACTTAGAACCACAACAGGAAGAAAAGAACACAACAAGCCATATCCCTGATCCCAAATACAAACCAGCTCATGTCGATGCCGGAGGAAGACGACTTCCGACCGTCGTTCTGCCCAGACCAAGGTATGTTACTACAACTGAGACATATACTGAAGAATTTTACTCAAATTCAAGGGATGGCTTTCAATATAGCCATACCAAGAACTCTGAACCAGTGAAGTCTTATGGACTTCACCATGATAAAGGGATTCGGCATCCAAGTCGCCCCGCTCTTAATCGCCCAACTGAGTTCAATAGACTCTTAGTCAAAGTCGAAATGGAAGAAGACCAGGTAAAACATGAAATGAGGATAAGTAAACCAATGAATGATATTGAGAAGGCTATAGAGTTCTTTAAAGAAGCTGTAAACCTTCCCTATTGCAAAAACAATGCTTGTCACGCACCAGATCATCCTAAGAAAGATGGCTACACAAAAACTATTGACAGCAACGAAGCAGCACGTCGGTTCGGGAACTTCGGCATACCACCTCCGGTGCCGAGTGCCAACGGAGCAACCATTAACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGTAACAGTGTGA
Protein sequence
MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTTTETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVEMEEDQVKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV
Homology
BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match:
KAG6599284.1 (putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 448 bits (1153), Expect = 4.63e-151
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 0
Query: 1 MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT
Sbjct: 1 MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
Query: 61 TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE
Sbjct: 61 TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
Query: 121 MEEDQVKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEA 180
MEEDQVKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEA
Sbjct: 121 MEEDQVKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEA 180
Query: 181 ARRFGNFGIPPPVPSANGATINCKEAARKYK 211
ARRFGNFG+PPPVPSANGATINCKEAARKYK
Sbjct: 181 ARRFGNFGVPPPVPSANGATINCKEAARKYK 211
BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match:
KAA0063635.1 (hypothetical protein E6C27_scaffold329G001480 [Cucumis melo var. makuwa] >TYK18391.1 hypothetical protein E5676_scaffold456G001150 [Cucumis melo var. makuwa])
HSP 1 Score: 211 bits (536), Expect = 1.76e-65
Identity = 122/216 (56.48%), Postives = 140/216 (64.81%), Query Frame = 0
Query: 1 MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
MADFRYGFF RPDNK +E EEK+ HI +PK KP ++DAGGR+ PT +LPR RYVT
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDAGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
E +TEE HTK EP+K+ DKG S A+N+ EFN+LL K +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNS----DKGTL-DSNLAINQRIEFNKLLAKAQ 120
Query: 121 MEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNE 180
E K+EMR+ S+PMNDI KAIE KEAVNL KNNAC A H KD TKTIDS E
Sbjct: 121 EEVRLPKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYH-HKDSCTKTIDSKE 180
Query: 181 AARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 215
AARR+G FG V SAN ATINCKEAARKY G V
Sbjct: 181 AARRYGTFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match:
ADN33904.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 209 bits (532), Expect = 7.10e-65
Identity = 121/216 (56.02%), Postives = 139/216 (64.35%), Query Frame = 0
Query: 1 MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
MADFRYGFF RPDNK +E EEK+ HI +PK KP ++D GGR+ PT +LPR RYVT
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
E +TEE HTK EP+K+ DKG S A+N+ EFN+LL K +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNS----DKGTL-DSNLAINQRIEFNKLLAKAQ 120
Query: 121 MEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNE 180
E K+EMR+ S+PMNDI KAIE KEAVNL KNNAC A H KD TKTIDS E
Sbjct: 121 EEVRLPKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYH-HKDSCTKTIDSKE 180
Query: 181 AARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 215
AARR+G FG V SAN ATINCKEAARKY G V
Sbjct: 181 AARRYGTFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match:
KGN60838.1 (hypothetical protein Csa_019431 [Cucumis sativus])
HSP 1 Score: 206 bits (524), Expect = 1.20e-63
Identity = 120/217 (55.30%), Postives = 139/217 (64.06%), Query Frame = 0
Query: 1 MADFRYGFFCRPDNKNLEPQQEE-KNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVT 60
MADFRYGFF RPDNK +E E K+ HI DPK KP ++DAGGR+ P +LPR RYVT
Sbjct: 1 MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60
Query: 61 TTETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKV 120
E YTEE HTK EPVK+ DKG + S A+N+ EFN+LL V
Sbjct: 61 PIEKYTEEV-----------HTKKYEPVKNS----DKGTLN-SHLAINQRIEFNKLLANV 120
Query: 121 EMEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSN 180
+ E K+EMR+ S+PM DI KAIE KE VNL KNNAC A +KD TKTIDS
Sbjct: 121 QKEARLPKYEMRLLSEPMTDIGKAIECLKEVVNLDCSKNNACAASAR-RKDSCTKTIDSK 180
Query: 181 EAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 215
EAARR+G FG P PV +AN ATI+CKEAARKY G V
Sbjct: 181 EAARRYGKFGAPVPVSNANVATIDCKEAARKYNGAAV 200
BLAST of Cp4.1LG11g09640 vs. NCBI nr
Match:
KAG7969012.1 (hypothetical protein I3843_07G008900 [Carya illinoinensis])
HSP 1 Score: 77.0 bits (188), Expect = 5.81e-13
Identity = 63/223 (28.25%), Postives = 96/223 (43.05%), Query Frame = 0
Query: 32 DPKYKPAHVDAGGRRLPTVVLP----RPRYVTTTETYTEEFYSNSRDGFQYSHTKNSEPV 91
D +P +DA GR +P +V + Y+ T E + G+ + ++P+
Sbjct: 37 DQVCRPVLIDAEGRTMPVIVCTSNQNKQSYLVDT---IERVRTPLVSGYTHGSPPKADPM 96
Query: 92 KSYG---------------LHHDKGIRHPSRPALNRPTEFNRLLVKVEMEE--------- 151
K+YG ++ D R S PA +RP E L KV+ E
Sbjct: 97 KNYGNRDSPPTKADPVKDYVYDDDDWRRHSSPARDRPREVEEFLNKVQTEAMGRPSRSAW 156
Query: 152 --DQVKHEMRISKPMNDIEKAIEFFKEAV------NLPYCKNNACHAPDHPKKDGYTKTI 211
+++ ++ P +DI A+E KEA N+P PK+D Y TI
Sbjct: 157 APATPRNDTKLGTPTSDIATAMENLKEAARVLSVTNVPPQYRYTIPLSTEPKRDTYPDTI 216
Query: 212 DSNEAARRFGNFGI---PPPVPSANGATINCKEAARKYKGVTV 215
DS EAARR+GN I P ATI+ +EAA++Y G ++
Sbjct: 217 DSREAARRYGNLSISSRPRTTGDTYTATIDSREAAKRYGGGSI 256
BLAST of Cp4.1LG11g09640 vs. ExPASy TrEMBL
Match:
A0A5A7VCJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001150 PE=4 SV=1)
HSP 1 Score: 211 bits (536), Expect = 8.50e-66
Identity = 122/216 (56.48%), Postives = 140/216 (64.81%), Query Frame = 0
Query: 1 MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
MADFRYGFF RPDNK +E EEK+ HI +PK KP ++DAGGR+ PT +LPR RYVT
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDAGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
E +TEE HTK EP+K+ DKG S A+N+ EFN+LL K +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNS----DKGTL-DSNLAINQRIEFNKLLAKAQ 120
Query: 121 MEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNE 180
E K+EMR+ S+PMNDI KAIE KEAVNL KNNAC A H KD TKTIDS E
Sbjct: 121 EEVRLPKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYH-HKDSCTKTIDSKE 180
Query: 181 AARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 215
AARR+G FG V SAN ATINCKEAARKY G V
Sbjct: 181 AARRYGTFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Cp4.1LG11g09640 vs. ExPASy TrEMBL
Match:
E5GBR2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 209 bits (532), Expect = 3.44e-65
Identity = 121/216 (56.02%), Postives = 139/216 (64.35%), Query Frame = 0
Query: 1 MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
MADFRYGFF RPDNK +E EEK+ HI +PK KP ++D GGR+ PT +LPR RYVT
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
E +TEE HTK EP+K+ DKG S A+N+ EFN+LL K +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNS----DKGTL-DSNLAINQRIEFNKLLAKAQ 120
Query: 121 MEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNE 180
E K+EMR+ S+PMNDI KAIE KEAVNL KNNAC A H KD TKTIDS E
Sbjct: 121 EEVRLPKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYH-HKDSCTKTIDSKE 180
Query: 181 AARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 215
AARR+G FG V SAN ATINCKEAARKY G V
Sbjct: 181 AARRYGTFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Cp4.1LG11g09640 vs. ExPASy TrEMBL
Match:
A0A0A0LG87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012700 PE=4 SV=1)
HSP 1 Score: 206 bits (524), Expect = 5.80e-64
Identity = 120/217 (55.30%), Postives = 139/217 (64.06%), Query Frame = 0
Query: 1 MADFRYGFFCRPDNKNLEPQQEE-KNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVT 60
MADFRYGFF RPDNK +E E K+ HI DPK KP ++DAGGR+ P +LPR RYVT
Sbjct: 1 MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60
Query: 61 TTETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKV 120
E YTEE HTK EPVK+ DKG + S A+N+ EFN+LL V
Sbjct: 61 PIEKYTEEV-----------HTKKYEPVKNS----DKGTLN-SHLAINQRIEFNKLLANV 120
Query: 121 EMEEDQVKHEMRI-SKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSN 180
+ E K+EMR+ S+PM DI KAIE KE VNL KNNAC A +KD TKTIDS
Sbjct: 121 QKEARLPKYEMRLLSEPMTDIGKAIECLKEVVNLDCSKNNACAASAR-RKDSCTKTIDSK 180
Query: 181 EAARRFGNFGIPPPVPSANGATINCKEAARKYKGVTV 215
EAARR+G FG P PV +AN ATI+CKEAARKY G V
Sbjct: 181 EAARRYGKFGAPVPVSNANVATIDCKEAARKYNGAAV 200
BLAST of Cp4.1LG11g09640 vs. ExPASy TrEMBL
Match:
A0A1U8KUC0 (uncharacterized protein LOC107920715 OS=Gossypium hirsutum OX=3635 GN=LOC107920715 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 1.98e-11
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 0
Query: 128 HEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNF 187
HE +S+P ++I A+E+ KEAV P P+ DGY TIDS EA R++G+
Sbjct: 253 HEANLSQPTSNINTAVEYLKEAVK-----------PPAPRYDGYPNTIDSREAERKYGDL 312
Query: 188 GIPPPVPSANGATINCKEAARKYKGVTV 215
+ P + G TI+ +EAARKY+G V
Sbjct: 313 AVGTPPIGSYGRTIDSREAARKYRGTAV 329
BLAST of Cp4.1LG11g09640 vs. ExPASy TrEMBL
Match:
A0A7J9FH42 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_001530 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 2.51e-11
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0
Query: 128 HEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEAARRFGNF 187
HE +S+P ++I A+E+ KEAV P P+ DGY TIDS EA R++G
Sbjct: 242 HEANLSQPTSNINTAVEYLKEAVK-----------PPAPRYDGYPNTIDSREAERKYGGL 301
Query: 188 GIPPPVPSANGATINCKEAARKYKGVTV 215
+ P + G TI+ +EAARKY+G V
Sbjct: 302 AVGTPPIGSYGRTIDSREAARKYRGTAV 318
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6599284.1 | 4.63e-151 | 99.53 | putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KAA0063635.1 | 1.76e-65 | 56.48 | hypothetical protein E6C27_scaffold329G001480 [Cucumis melo var. makuwa] >TYK183... | [more] |
ADN33904.1 | 7.10e-65 | 56.02 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
KGN60838.1 | 1.20e-63 | 55.30 | hypothetical protein Csa_019431 [Cucumis sativus] | [more] |
KAG7969012.1 | 5.81e-13 | 28.25 | hypothetical protein I3843_07G008900 [Carya illinoinensis] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7VCJ6 | 8.50e-66 | 56.48 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
E5GBR2 | 3.44e-65 | 56.02 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A0A0LG87 | 5.80e-64 | 55.30 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012700 PE=4 SV=1 | [more] |
A0A1U8KUC0 | 1.98e-11 | 40.91 | uncharacterized protein LOC107920715 OS=Gossypium hirsutum OX=3635 GN=LOC1079207... | [more] |
A0A7J9FH42 | 2.51e-11 | 40.91 | Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_001530 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |