Cp4.1LG11g09610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g09610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L18
Location	Cp4.1LG11: 8097753 .. 8098343 (-)
RNA-Seq Expression	Cp4.1LG11g09610
Synteny	Cp4.1LG11g09610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCCTCACATGATGTTATCCCAGAAGTTTTGATCACAGATAATCATCATTTTCATACTGCTTAAATGAATCCATCTTTGCATTAGAAAAATTACTTGCCCAGATTTATAAACCTTTGATTACTCTATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

mRNA sequence

ATGAATATTTATAAACCTTTGATTACTCTATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

Coding sequence (CDS)

ATGAATATTTATAAACCTTTGATTACTCTATCACAGGCTCATTATGCACCCAGAAGTTTCTTTGGTGTGGAGGACTTCGTCGACGATGATAATAGTCGGCCATACACATACCAAAAGGGGAAGAAATCCAAAAATCCAAAAAAGCACATATCATTCAAACAACGGACGGTAGCCTACATGGAGCCATTTACACTCGACGTGTTCATCTCGAAGCGGTTTGTTTCAGCATCGCTCACGCACAGGGTGACTTGTAAACAAGTTGCAGTTGCAGGTACGAACTCGAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCGGACATTCCTGCTTGTTTGGCTGTAGGCCGTATTTTATCTGAGAGGGCTAAAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGAGATAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATCTATCTGGAGTAA

Protein sequence

MNIYKPLITLSQAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy Swiss-Prot
Match: B1Z777 (50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.3e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 65  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEA 124
           L VF S + +   +      + +A A +  KD+KA L++ +D  A  AVG++++ERAK A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 125 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 157
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy Swiss-Prot
Match: C3MAZ6 (50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.3e-04
Identity = 27/92 (29.35%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 65  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEA 124
           L V  S + + A +   V  K +A A T   D+K+ L++ +D  A  AVG++L+ERA +A
Sbjct: 29  LSVHRSSKNIYAQIIDDVAGKTIAAASTLEADLKSALKTGADTAAATAVGKLLAERASKA 88

Query: 125 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 157
            V    +  R    + G+++A+ ++  + G++
Sbjct: 89  GVKDVVF-DRGAFIYHGRVKALAEAAREGGLN 119

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy Swiss-Prot
Match: A5FZU9 (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.9e-04
Identity = 29/110 (26.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 47  KKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSD 106
           ++ + ++ R  A+  P  L VF S + + A +      + +A A +    +++ L++ +D
Sbjct: 12  RQRLRYQIRLKAHGRP-RLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSALKTGAD 71

Query: 107 IPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 157
             A  AVG++++ERAKEA V T     R    + G+++A+ ++  ++G+D
Sbjct: 72  KAAAAAVGKLVAERAKEAGV-TQVVFDRGAYMYHGRVKALAEAARESGLD 119

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy Swiss-Prot
Match: C4Z2U6 (50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.9e-04
Identity = 32/119 (26.89%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 38  QKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDI 97
           +K +     +KH   + R     E   L VF S   + A +      K +  A T  K++
Sbjct: 4   KKSRTVVREQKHRRLRNRFSGTAERPRLAVFRSNNHMYAQIIDDTVGKTLVSASTLDKEV 63

Query: 98  KAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 157
           KA L+  +++ A  AVG ++++RA E  + T  Y  R    + GKI+A+ ++  + G++
Sbjct: 64  KAELEKTNNVEAAAAVGTVVAKRALEKGIKTVVY-DRGGFIYAGKIKALAEAAREAGLE 121

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy Swiss-Prot
Match: B1LWR0 (50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.9e-04
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 65  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEA 124
           L VF S + +   +   V  K +A A +  K +K  L++ +D+ A  AVG++++ERAK A
Sbjct: 29  LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88

Query: 125 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 157
            V T     R    + G+++AV ++  + G++
Sbjct: 89  GV-TKVIFDRSGYIYHGRVKAVAEAAREGGLE 119

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: XP_022946296.1 (uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_023546735.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >XP_023546736.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >KAG7030275.1 hypothetical protein SDJN02_08622 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298 bits (763), Expect = 4.38e-101
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           +AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 296 bits (758), Expect = 2.53e-100
Identity = 148/151 (98.01%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           +AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKH+SFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRILSERAKEADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILSERAKEADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: XP_038890306.1 (50S ribosomal protein L18 [Benincasa hispida])

HSP 1 Score: 288 bits (737), Expect = 4.01e-97
Identity = 144/151 (95.36%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: XP_022150717.1 (uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncharacterized protein LOC111018783 [Momordica charantia])

HSP 1 Score: 288 bits (736), Expect = 5.70e-97
Identity = 143/151 (94.70%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H+APRSFFGVEDF+DDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EVHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 286 bits (732), Expect = 2.32e-96
Identity = 143/151 (94.70%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H APRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy TrEMBL
Match: A0A6J1G387 (uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC111450420 PE=4 SV=1)

HSP 1 Score: 298 bits (763), Expect = 2.12e-101
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           +AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy TrEMBL
Match: A0A6J1KIR9 (uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 1.23e-100
Identity = 148/151 (98.01%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           +AHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKH+SFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRILSERAKEADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILSERAKEADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy TrEMBL
Match: A0A6J1DBH5 (uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018783 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 2.76e-97
Identity = 143/151 (94.70%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H+APRSFFGVEDF+DDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EVHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy TrEMBL
Match: A0A1S3C286 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 286 bits (732), Expect = 1.12e-96
Identity = 143/151 (94.70%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H APRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. ExPASy TrEMBL
Match: A0A0A0LLI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 1.60e-96
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 12  QAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 71
           + H APRSFFG+EDF+DDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 72  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASY 131
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 132 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 162
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of Cp4.1LG11g09610 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-72
Identity = 132/148 (89.19%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 15  YAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFV 74
           +APRSFFGVED+VDDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFV
Sbjct: 42  FAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFV 101

Query: 75  SASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPR 134
           SASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++GRILSERAKEADVYTASYTPR
Sbjct: 102 SASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPR 161

Query: 135 ERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           ++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 162 DQDKFEGKIRAVVQSLIDNGIDVKIYLD 189

[Close]

BLAST of Cp4.1LG11g09610 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-72
Identity = 132/148 (89.19%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 15  YAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFV 74
           +APRSFFGVED+VDDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFV
Sbjct: 87  FAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFV 146

Query: 75  SASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPR 134
           SASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++GRILSERAKEADVYTASYTPR
Sbjct: 147 SASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPR 206

Query: 135 ERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           ++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 207 DQDKFEGKIRAVVQSLIDNGIDVKIYLD 234

[Close]

BLAST of Cp4.1LG11g09610 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 110.9 bits (276), Expect = 9.5e-25
Identity = 56/119 (47.06%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 44  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQS 103
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 104 RSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 163
           R ++ AC AVG +L++R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]

BLAST of Cp4.1LG11g09610 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 50/117 (42.74%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 39  KGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 98
           +G+ +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 99  AVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 156
             + S  D  AC  +G++++ER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1Z777	5.3e-04	31.52	50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]
C3MAZ6	5.3e-04	29.35	50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) ...	[more]
A5FZU9	6.9e-04	26.36	50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
C4Z2U6	6.9e-04	26.89	50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 /...	[more]
B1LWR0	6.9e-04	30.43	50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]

BLAST of Cp4.1LG11g09610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946296.1	4.38e-101	99.34	uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 unchar...	[more]
XP_022999138.1	2.53e-100	98.01	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]
XP_038890306.1	4.01e-97	95.36	50S ribosomal protein L18 [Benincasa hispida]	[more]
XP_022150717.1	5.70e-97	94.70	uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncha...	[more]
XP_008455473.1	2.32e-96	94.70	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]

BLAST of Cp4.1LG11g09610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G387	2.12e-101	99.34	uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]
A0A6J1KIR9	1.23e-100	98.01	uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611...	[more]
A0A6J1DBH5	2.76e-97	94.70	uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1S3C286	1.12e-96	94.70	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
A0A0A0LLI4	1.60e-96	94.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g09610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08845.1	1.2e-72	89.19	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.2e-72	89.19	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	9.5e-25	47.06	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.2e-22	42.74	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 39..156 e-value: 1.9E-16 score: 62.5
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 12..162
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 53..155 e-value: 8.55695E-22 score: 82.2027
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 41..155
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 41..156 e-value: 2.1E-8 score: 34.5
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 12..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09610.1	Cp4.1LG11g09610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome