Cp4.1LG11g09240 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g09240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontrafficking protein particle complex subunit 6B
LocationCp4.1LG11: 7663301 .. 7673033 (-)
RNA-Seq ExpressionCp4.1LG11g09240
SyntenyCp4.1LG11g09240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGACGTTTTTGCCATATTTTTAATTCCTTTCATTCATATTGTAGACTTAAAATTTAAGTTTTCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANATACGACATGTCGTCATTTAGTAGATGAATCTAGATTCAGGGCGGAATCAAGGCACTGAGTCGATCCTCTCATCCTCCACCTCGCTCTGCCTTTCCTTTCCAATTCCGTCGAAGTGAACTTCAGTTTCAACAATTCCACTTGATTGCAGAGAAGAAACACATGGGGAGAGAGGTCTCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGTAATCGGTTCTACGCCAATAAGCCGGAGCTTGCCGCCCGTCGCATCGAGGCAATCGGCTATCAGGTCGGCCATCAGCTCTCCGAACGGTATTCCTCCACCGCACTTTTTACCCTTCTTTTTGTATCTGTAAATTGTCTCGGGATCGGGATTCTTTGTTGCTTAGATTTTGATTTCTAGAGTTGGCTAATGGATCTGTTGTTGCATTTTGACGTGGTTATTGTCGTTAGGTTTTCTGAATGTGTATGTTTGGGAGATTTATAATTGAGCATGTGAGGAACAATGGTTAGGCTTAGAATTGCAGGTTAGAAGTGTTCCTCTAGCTCTGATGGTCTCACCATGACATCTTTTTTAGGATAACTCGGTTTGTATCAAAGACGTGCTCTAGAAAGTGTTTTGTGAGTTCTAGAGACCCATTAGCTTAAAAGGATCCAAGATTTTAGACCCATTAGCTTAATCACTAGTGTATGTAAAATTCTGGCCAAGATCTTGGCGAATAGACTTAGGAAAGTCCTCCCTAGGACTGTCTCTGATTGGCCAGGGGCCTTCATTACTAGAAGGAAAATGTTGGATTAGGCTCTTCTAGCTGATGATGCCATTGATGATTATCGTACTCGTAAGCGCGAGGGGGTTATATTCAAGATTGATTTTGCTTACGATCACGTGGATCAGAATTTCCTAGATAGAGCCTTGGGTAAAAATGGTTTTGGGTACATATGGAGGCTTTGGATCTAGAGTTGCGTTAGGATGGTTAGGTATTCCATTTTTGTTAGTAGAAAATCTCGGGGAAGGATTCATGCCACTCAGGGTTCTAGATAAGGTGATCTTCTCTCTCCCATTCTTTTCCCCTAGGTGGTGGATATTTCGAGTAGGATTGTTTCGAGAGGAGTGGAGAAGGGGGTTGTTGAGGGTTTTCATGTGGGGAAGGATGTCTCATCTCCCGTGTGATGATGCATAGTCTTTTTGCTCGAGGAAAGAGGAGTCATTTATCAATCTTAACCAGATCTTGTGGTTCTTTCAATCTATCTCAAGTTTAAAGATTAAAAAAGGCAAATGCTCTGTTATTGGTATCCTAGATAGCCCCTCCAAGTTGGAGAGATGAGCTTTTTGGGTGAGTTGTGAGGTGGGGTTGTTCCTTTCATCTTTCTTCGGTCACCCTTGGTCATTACTCAAGGAATGGGCCTCTTAGGACCCATGGTGGAAAAAGTTCTGCAACATTTATCCTTTTGGACAAAAAGATTTTTCTCTAAGGGAAGGAGACTTACCGACCCTGTCAATCCTTAGTGAAATCCTTATTTACTTGTCTTCATTTAGGAACCATGTGAAGGTTTGCGATACCCTCGAGAGACTTATGTGTAACTTTTTATGGGAAAGGGTGGAGGAAGGGAAGGGTTCTCACTTGGTTAGTTGGGAAGTTGTTGATAGAATCCAAAGAGAACTAGAGTAGTATTGAAATATAAAAGATAAGAACTACAAGATAAACCAAGTGCTGAAGCCCTAATTCACTCACCAAAATAATGCCTAACCCCTCCTCTCTCTATTTATAACAAATCCTTTAATAACGCTCTTCCCTAATTGTTACTATACGCTTAATATCCTAATAATACTCTTGTAGCATTCCTATCATTACCCGCCCCTAAAAACACATTGTTGAGAAGTTCTGGCTAAACTACAAAAACCAAAATTGAGCAACCTTTTTTTATTAACGTATTCACCCCTTTAGAATTGAAACCTAGCATTCTCGAATATAAAATCCAGACGGTCCAGCACAAAAGTCAGGATGTGCAGCAGTACTAGTGAAAAGTAAAGGAAGTCAAACGACATATGCGGCGGCCAACAGCGGACAACTAGGACAGCTTAGTGGTGTGATTTTTCCCGGTAGAAGTGATGCAGCGTAGGTGAAAAACAGATCGTAGTGGCTGGTAGATTAGTTTTCTTGCATGTGGAAGATGACAAGTTGGATTTTGGGTTCAAAATAGAAGACAACACAACCCAAAGCACATATTTTGTAATAACCTCTTTTTCAGAAAACAAATGCGTTTACCCAACTTACCCAAATCCAGCCCATTAATCAGCTTACAGCCCCACTTTGTTCCAGAACCTTCTTTTTTCTCACAATGCATGTGATAACAGATAACAAACTTGATGTACCATGATTTTTATGGATCTTTCTTTTATGTTTCTTTTAAAGATCTTGTATTTTCTTTTAAGTTTTTTTTTAAGTTCTGGCTTTCTTGTTCTTTAGTTTATCGTGGGTTATTTTTGAATTACCCTTTGACCAAGTTGGGTATTGTTTTGAGGGTTCTGTGGTTAGTTGGCCAGCTTGTGACCTTATATATCTAGACCTTTGGTTGTATTTTGGCATTCAATTACACCATACAGAAGTTTTGATTCAAACCATAGTCTTTACTACATTATTTTGGTATCCGAGCATCTGACAAGGGGATCTAAATGGCTCGGCAAAAGAACCCGACACCTCCGGTGTTGATGCAGCTGAAACAGGTGAGGAGGATGAATTCCTCTCTCCCTGAACAATTTCTCACTTTATCCTCAGAATTGAAGAATCCATGGGAGAGATGAGAAATAGTCAACATGAGCTTTTACAACTGATGAAAGCTATGACCGAAAAAATGGATGGCCAAATTACAATTAGCAACAATGTAATTACGGACACAATGGAATAGAACATTGTCGGCCTGAAAAACAACCACTATATGGCACAAGAAGGTTGCAAGCACACCCAAGAAACATACCACCATCTATTTGAAATCAACCTCTAGAATATTACGAAGGAGTGGAACTCCAAGTTTACCAAAGACCACGTTAAGATATGCATGAAGACTGTAAGAAAATCCAAGAAATTTGCCTCCACTAGGTAGAAATCAACCACAGGAAATATACATAGAAGAGGTCCTATACTACCAACTCGAAAGTCAACATTGGGCAAGAAGACCTAAAGAACTTCCAAGAAATGTACTTCCACCCATTCAAATTCAAGAACTTCATACTAAACAATTTGTCTTTGCAGATGTCGATGGATATTTCAAATAGGGAAACTCATTCAAACAACAGTGAAATTCGGGGAAGGAGAATTTTTTTCATGACTTCGATGATTATTTTAAGGATAGCCATGAACAATTAGAGTGGGTAACAATAGAATACGTGTTGGATTTTCTTTATATTTTTTGTAATATTAGATGTGTATTATGTGTGTAATGCCCGAGTAAAGGAGGAGGACATGAATGAATTGATACCACATCTAAATGAGAGTGATCCTGACGATAGGTTGGTTGAGAAAGGCTTAAAAGAATTGAAGTTACTGTCTATACCAACAGGGTGCACCTTCCTTTTCGGTGGCTTGAAACTCCAAAATTAAGCATGCTCAACTTGGAGCAATTTTATATTGGGTAGCCTCCAAGTAATTTTTCTAGGATGCATATGAGTGAGGACGAAACGTGTTGAAAGGACCCGTGTTGGTCTGTGAGGATAGTCTTTACTCTTAGAAGCACTTCAAGACAAGCAAATAACGTGGTGACGACGGATGCAGAAGAATGTCAAGGTTATCATGTGTCAAATTCAGCTTTCAAATCCTAATCCAAATCCGAATCCGAATCCTGAGCATGAGACGTTACAACGCGTATTTATTCGTTATATCTTTAAGATTTTTTTTCCTTAGTTCAAGATGATCTTTCTTTAATATAAAAAGACCATGTATTTGATTCATAGAAGTAAGAAGAAATACAATAGTATTTTCTTCCAAATTCAAGTTGGTGCAAGAATCCTAACTTTTAGAAACCCTAGCCTCTGCAGTCATTGCCGTTTGAACCCAGCCATCATCATAAAATGACAATTTTACTTTTGATGGTTTCTTTGTGTTTGAGAAGTTCTTGTTGGTTCGTTGGTTTCTTCATGTGATTCTTGCATGTTCACAAACGTAGTTTTTGCTCATTCATTGATTCATTCGTGTTCGCAGTTCTTGTTCATAGATCTAAGTTTTCTTTTGTTCAACAATTGTGTTGGTTGTACATCATGGGTGTAACCACAAAAGTTTTACATCGGTCAATTGAAGCTCTATTTGCTGCTCCGCAGAGACGGTTGTCATATAGTTCCTCGTTGCAAGTGTTAAACCATTCTTCTTTGTGGTTGTTGTGGGTCTGAAACCAATATGATTTGGTTATTTTTTTTTTCTCTTTTGTCGATTCAAGTCTGGTTCGATTCAGGCATGGTCAATTGGTTTGGTTCCATTAATATTTTGGTTCGGTTCTAAATCTTGGTTTGGGGTTTCTTTCTAACTAGACATTATTTGTTGCTAACTCAAGTTACTTCAGTATGGAACAAATTCATTGACCCCTACAACTACTACAAACCAATTTGCCATTTGGTGTTCTTTGTGTTTCCTTGACAGAAATAGGTAACTATCTTCATGCCTTTTCTTGTAATAATTCATCTTCGTAGATCATTGATTTTGGAGCCACTTATCACATATCATTTTTATTTGTATTCTCATTTTACTTAATTCATTGTGATGTTTGTGGTCCTCTAAAATTTTGACTCGTAGTGGTAAAAAGTAGTTTGTTGCTTTTATTGATGATCACACACACTATTGGGTCTACTTAATGACCAAGAAATTTGAGGTGAAATATCTGTTCATTTTGGAAACATGATTGAAACTCGAAATTGAAATCAGCACTTTACACTCTTGACAATGAAAATAAGTATTTCAATAAGTGATTTTTAAAAGATAAAAGGTGTTTTACATCAATCTACTTGTCGAGATACTCTTCTACAAAATTGAATTGCTGAATGGAAAAAATTTACTTGAGTTGCATGTGCCATAATGTTTGCTATGCATGTTCTTAAGTATTTATGGGGGAGTTGTAACCATGGCTACTATTTGATAAATAAGATGGTCATTGTGAATATTACATCCTTTTTGTAAATTTCAATCATTAATGAAATTGTCTCTTACCAAAATCAATAAGATAGGCCAGTAAAGTTTTAAATTTTTGAATCCCATGAATGTCTTAAAAACTTTTTTTTTCCCAACTTCTCGCATACATTTGGATTTACCTATAAAAATTTTTGGTTGCATCGCATAGGTCCAAATACCTAGCTTTTTCTACCAAAACTTGATCATAGGGCCACAAAATGCATTTTCTTGGGTTATACTTCAAATAAAAAAGGGTATAAATGTTTTGATCCTCACAGAAATCTTTTATGTGTTCTTTTTACAAAAACAATCATATTTTACCCAAAATTCTCTTCAGGAGGTGAAGTCAAATGTAGAAGATGTTTTTTGGGAAATATTTGAGTCCCTTCCTTCTGTTATTCATCTAAACTTGTCTGTTCCAAGTCCTTTGATGTGAATTATAAAAACCTTGTCTGTTCCAAGTCCTTTGATGTGAATTATAAAAACTTCTCGTTCATCTAAACTTGTCTGTTCCAAGTCCTGTGATGTGAAGTATAAAAACTTCTCATTGAGGGAGAAATACTATAAAATGACCCTAAAGGTCAAGATCCAAGTTAAAGTTTTAAGGTCAATCAAAGGAACGAAGACTAGATTTTTAATTCTACACAAAGCTAGTTTGAAATTTAGAAAATGATGCTGGAAATTCCTAAGATAAACGTAGAATCTAACTAAGGACCAAATTCACTCGAAGATCTCTTTTGACCTTTGAAGAAATTATCATTTCTCTCACCCCAGAGGCGGCAAAATAGTACACGCCACCACCTACCACAAAAACGTCCATTCTCTAGAGAATTGAATGGGGTAGGAGATCGTGATCGTCTCTTTACAATCCGGACATCTGGTCAAACAATAATCAAACACCTCAAAGAAGCAACTCCAAATAGTATTAGAAAAACTATACCCCGAAAGAAGATTAATCCCTATCCTTTGTCGACCACAATACAACAAAATGATCCGGATCACCATGGACCCCCTAGCCGATTTGGTTTAAGGTATTAACTCTTCCATGCATAACCTGCCAAACAAGAACTTGACTTTCTTGAAAATCTTTACCTTTGGCATAGAGGAAAAAAAATGGAAACGGTTGACCTAAGGAGAGGGGGAGGAGAAATACTGACTAAACACAAAAAGAAAGAACTACAAGAGAAACCTTTGGATAGATAGGGGCTCTGAAAGCAAACACCCCCATCAGGGTTAAAGTAAAAGTCTCCAACAAAGGTAACGAGTCCAAAGTAGCCCTCATTTTCCTATTGGTCAATAAACAGGAAAAATCAAGAGAAGGAGAAACCAGATTCTCAGAATGAGAAAGAATTGAAAGAACTGAGTGATAAGGACAACTGATATAACCGAGAAAACTAGGAGCATGACTACCTTAGGGGTTGTGAAGGTGGATTGAAAGAAATTATTGGAAATTTGCAGGTTGGAGAGATGATCATGTGTTTATGGGTGATACCAAGTTTTATACGTTTGCAGGTGACACTGAAATCCTTGTTCAGGCTATTAAAGGGTAGGGCCAGAGTGTTTTAGTTGAGCTGAGGGCAAAGGTAGAAGAGGAATTGTTGTGTACTTATGTATTGGATGAAATTCAACAAGGCTTGGATAAATTTCCCTCGGGTTTCAAGCCTTTTACGGATCTACCTCCATCGCAAAACTAGTACCATACTATGCATTGTTACTACTTACTAGTTATATCTTAGATAAATCACGTTCCCTATCCTTATCCACCATTTCAAAAGGATGAAATTGAGCAGTTAGTTATCGGAACGTTATTAAATGGGATTGTTCAACTGAGCACTAGATTGTTTTCAAGCCCTTTTTCTTTTTATTGATTAAGAATTTGCGTTTTTATGTTGGTTATAAAGCTTTAAGTTGAGTAATGATTCCAATCAAATCTCCCATTTGAGTTGCGGATGAATTGTTCGATGAACTCTATGCAGGCATTATCTTTTCCAAAATCAATTGGAAGGGTACCCCCGATTAAGCTCTTACTAGATGATATCCATAGTAACGCCGTGAAGGTTGACTAATATTCCCTTGCATTTCCTATCTCTTAAGATTAATATCCTTTCGGCCTTTTCATACAGGTTTTCTTGTCCTTCTTTTATAATATTCTGGTTTGTAGTGTCAATTCAAGGATCTTTTAAGCTTTCTTGCAGCAGTTCTTCAGGTGCTTTGGGAGCATCAGTTAGTTGCCAATGGTAAAAAATGTCAGTTTGCATTATCCCACATCTTGTATTTGGCCACTAGTGTTAGCTTAACCGATGTAGTTATCCCTAATCCTTTCTAAAATTGCTGCAAAGGATCAATGGCAAGAAAATTTGGAGGATTCTAGGTGTAGCGACCCAAGCCCACCGCTAACAGATATTGTCCACTTTGACCCATTATTGCCGTTAGCCTCATGGTTTTTAAACACGTTTGTTAAGGAGAGGTTTCCACACCCTTACAAGGAATGCTTCGTTCCCTTCTACTATGTACCTCTCATACTAATGCAAGAATCTCGCCCAACAATGTGACCGAGAAGTTGCGAGTAAGAGAGGTACATAGTAGATGTGAAGATGGAGGGAGGGTATGCTTTATTAGGAAAGGAGAAACTGGGAACTCTTTGATCTTCCTCCAGTGATTTTCTTTTCCTTGTTTTGCTTGTGTTTGACTCAAATTAAATTTTCTGCCAAGATTGTCTATACATTATAACTTGGCTTCCATTTTTTCTTGCCCATTTTATGGTTTTTTTATTCATGCTATTTGATGGTTAAATATTGCAACTCAACTACCAATCTTTATTTTCACTAGGTATACGATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGTATGATCAGAAGCCAAACTTAGGGGAAGCCCTTTCTTTTTCCTGTGTACTTTATCCTACATGAACTTGGCCTAAATGTGAAAAATTATTTTGATTCCCAGGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTTGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATCTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCATGTAAGTAAACAAACTTCATCATAATATCCACTTTTCCTTCTTTTGGGTTGAGAGAAATGAGTCTGATCTGCTGAAATCGCTTATGTTATGAAATAGGTTCATTTGTTGTTCGCATAAAGGTTTGATGCCTGTGTGGGACAATGAAGATGCGCTACGTCCTCAACGCCGCCTCCAATTGTAATGCCTTCTTTCTTTCTTCTGTTTACTTTCTTTTTTACCTTTCTCTATTTCTCTCTCCTCTCCTAAACTATTGAAACTTTTAGCACAAAAGTTTGACCAATGCTTGTGAATGTATGAAAGTCGATAGCAATTATTTTTCAGAATTTCGAGATTTTAGAAGTATGGTGACGTTTATTCCTATTATACCATTTGGGATGATGGATTTATATACATAGTGGTCACCCGTATAGGTTGTTAAAATCGTACGAGTTTCTGGATAACTAAATAGTGTAGATTTGATAGTTTATGAGAGATCAATGGAGATACGTGTTAAAACACTTTTAGATAGTAAGAAATGATACGTAGGTATCAAAACGGTAAGAAATACATCTGCATTATCATTATCCATGGTCATTCGTATGGGTGGTATATGTGATGTTCTTTAATTCTATTGATATTTCTATAAAATTGAAATCTGGATATTTTTATCGACCAAATTTAAATTTCAGATACTAATGTTATTGTGTTGGTAATTATTGATGTAAATAAGTCAATATGCTTAAATCTAATATGAAAATGCAGGAGATAATGCACCAAAAATGAAGATTTCGGGAGAGATTTGCAGGTTTTGGCAGAGATTTGCAAATTATTATTAGAAATCATTGGATGAAGTATTTTCATAGTTTTTTTTTCCTCATATAGCTAATGGTACAACCATAGAAGGTGTCTATGGCATTGTGTAGCCTCTAAAAATAAGTTCTCTAATTTATTTTAGATATAAACCGACAGCCTTGGCCTTGGTTCATATTAGCTAGTCACTAGAAATCACTTATTAAATTGGGCAAATAGTCGACTAGATATAAGCAGAACCAAAATTCAAAATATACTTGATACTTCGATAGTTCTGGCATTGACGACAAAATTTATGTAATAACCTCCGTGACATGAATTAGTAGTGGAAATAAGTACCTTTCAGAAAGGGTCATGAATTGAAGAGATTGAAAACGTTTGTATGACAATCGTGCTACCTGATCATTCAGTACTTGAAT

mRNA sequence

AAAAAAGACGTTTTTGCCATATTTTTAATTCCTTTCATTCATATTGTAGACTTAAAATTTAAGTTTTCACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANATACGACATGTCGTCATTTAGTAGATGAATCTAGATTCAGGGCGGAATCAAGGCACTGAGTCGATCCTCTCATCCTCCACCTCGCTCTGCCTTTCCTTTCCAATTCCGTCGAAGTGAACTTCAGTTTCAACAATTCCACTTGATTGCAGAGAAGAAACACATGGGGAGAGAGGTCTCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGTAATCGGTTCTACGCCAATAAGCCGGAGCTTGCCGCCCGTCGCATCGAGGCAATCGGCTATCAGGTCGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTTGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATCTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCATGTTCATTTGTTGTTCGCATAAAGGTTTGATGCCTGTGTGGGACAATGAAGATGCGCTACGTCCTCAACGCCGCCTCCAATTGAGATAATGCACCAAAAATGAAGATTTCGGGAGAGATTTGCAGGTTTTGGCAGAGATTTGCAAATTATTATTAGAAATCATTGGATGAAGTATTTTCATAGTTTTTTTTTCCTCATATAGCTAATGGTACAACCATAGAAGGTGTCTATGGCATTGTGTAGCCTCTAAAAATAAGTTCTCTAATTTATTTTAGATATAAACCGACAGCCTTGGCCTTGGTTCATATTAGCTAGTCACTAGAAATCACTTATTAAATTGGGCAAATAGTCGACTAGATATAAGCAGAACCAAAATTCAAAATATACTTGATACTTCGATAGTTCTGGCATTGACGACAAAATTTATGTAATAACCTCCGTGACATGAATTAGTAGTGGAAATAAGTACCTTTCAGAAAGGGTCATGAATTGAAGAGATTGAAAACGTTTGTATGACAATCGTGCTACCTGATCATTCAGTACTTGAAT

Coding sequence (CDS)

ATGGGGAGAGAGGTCTCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGTAATCGGTTCTACGCCAATAAGCCGGAGCTTGCCGCCCGTCGCATCGAGGCAATCGGCTATCAGGTCGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGACCTCGGTTCACTGATCATCTCGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAGATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTTTTGCAAGATAATCGATTCCGCTGGCTTACACGCATGTCGGTTGATCCTCCTCAAGGTGAATCACAGGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAGGCAACAAGCATGCATCTATATTTCCCATGTGGAATCATAAGGGGCGCTCTCTCAAATCTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTCCCAGCATGTTCATTTGTTGTTCGCATAAAGGTTTGA

Protein sequence

MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Homology
[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy Swiss-Prot
Match: Q32L78 (Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPPQGESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVS 155
           QDN+FR LT+MS                 +  +  S +L F CG+IRG LSNLGI   V+
Sbjct: 95  QDNKFRLLTQMSAG--------------KQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT 154

Query: 156 ADISNLPACSFVVRIK 172
           A++S++PAC F V I+
Sbjct: 155 AEVSSMPACKFQVMIQ 156

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy Swiss-Prot
Match: Q86SZ2 (Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPPQGESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVS 155
           QDN+FR LT+MS                 +  +  S +L F CG+IRG LSNLGI   V+
Sbjct: 95  QDNKFRLLTQMSAG--------------KQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT 154

Query: 156 ADISNLPACSFVVRIK 172
           A++S++PAC F V I+
Sbjct: 155 AEVSSMPACKFQVMIQ 156

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy Swiss-Prot
Match: F1QMV3 (Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc6b PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-31
Identity = 65/136 (47.79%), Postives = 93/136 (68.38%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T + PRF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 34  KLENMGFRVGQGLIERFTKDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNHQGIYVL 93

Query: 96  QDNRFRWLTRMSVDPPQGESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVS 155
           QDN+FR LT++S              G+  +  A    L F CG++RGALSN+G+   V+
Sbjct: 94  QDNKFRLLTQLSA-------------GKQYLEHAPKF-LAFTCGLVRGALSNIGVKSIVT 153

Query: 156 ADISNLPACSFVVRIK 172
           A++S +PAC F V I+
Sbjct: 154 AEVSVMPACKFQVMIQ 155

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy Swiss-Prot
Match: Q9D289 (Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.4e-31
Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPPQGESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVS 155
           QDN+FR L ++S                 +  +  S +L F CG+IRG LSNLGI   V+
Sbjct: 95  QDNKFRLLIQLSAG--------------KQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT 154

Query: 156 ADISNLPACSFVVRIK 172
           A++S++PAC F V I+
Sbjct: 155 AEVSSMPACKFQVMIQ 156

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy Swiss-Prot
Match: Q78XR0 (Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.9e-24
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 0 

Query: 37  IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
           +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQ
Sbjct: 37  LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQ 96

Query: 97  DNRFRWLTRMSVDPPQGESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSA 156
           DN F  L  M   P              +  +     L F CG++ GAL  LG    V+A
Sbjct: 97  DNSFPLLVTMGSGP--------------QYLEEAPKFLAFTCGLLCGALHTLGFQSLVTA 156

Query: 157 DISNLPACSFVVRIK 172
            +++LPAC F V I+
Sbjct: 157 SVASLPACKFQVVIQ 157

[Close]
BLAST of Cp4.1LG11g09240 vs. NCBI nr
Match: XP_023545328.1 (trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356 bits (914), Expect = 3.69e-124
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172
           DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Cp4.1LG11g09240 vs. NCBI nr
Match: XP_022961590.1 (trafficking protein particle complex subunit 6B [Cucurbita moschata] >XP_022968804.1 trafficking protein particle complex subunit 6B [Cucurbita maxima] >KAG6590416.1 Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355 bits (910), Expect = 1.50e-123
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Cp4.1LG11g09240 vs. NCBI nr
Match: KAG7023966.1 (Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355 bits (910), Expect = 1.78e-122
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 71  MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 130

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 131 DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 190

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 191 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 242

[Close]
BLAST of Cp4.1LG11g09240 vs. NCBI nr
Match: XP_004135644.1 (trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 342 bits (878), Expect = 1.10e-118
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP Q ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-QNESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171
           DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Cp4.1LG11g09240 vs. NCBI nr
Match: XP_038878648.1 (trafficking protein particle complex subunit 6B [Benincasa hispida])

HSP 1 Score: 342 bits (877), Expect = 1.57e-118
Identity = 167/171 (97.66%), Postives = 168/171 (98.25%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP Q ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-QSESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy TrEMBL
Match: A0A6J1I0Q5 (trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=LOC111467932 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 7.28e-124
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy TrEMBL
Match: A0A6J1HCN4 (trafficking protein particle complex subunit 6B OS=Cucurbita moschata OX=3662 GN=LOC111462123 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 7.28e-124
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKV 172

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy TrEMBL
Match: A0A0A0M1M8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1)

HSP 1 Score: 342 bits (878), Expect = 5.34e-119
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP Q ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-QNESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171
           DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy TrEMBL
Match: A0A5D3CG65 (Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003390 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 2.18e-118
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP Q ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-QNESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Cp4.1LG11g09240 vs. ExPASy TrEMBL
Match: A0A1S3BP90 (trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 2.18e-118
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP Q ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-QNESQDNSA 120

Query: 121 DGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171
           DGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 170

[Close]
BLAST of Cp4.1LG11g09240 vs. TAIR 10
Match: AT3G05000.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-81
Identity = 141/172 (81.98%), Postives = 158/172 (91.86%), Query Frame = 0 

Query: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRF+
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP-PQGESQDNS 120
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP  + E+QD S
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENETQDPS 120

Query: 121 ADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 172
             GE+K AQA SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+K
Sbjct: 121 TPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVK 172

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g09240 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q32L781.1e-3148.53Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6... [more]
Q86SZ21.1e-3148.53Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPP... [more]
F1QMV32.4e-3147.79Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc... [more]
Q9D2895.4e-3147.06Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trap... [more]
Q78XR04.9e-2439.26Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trap... [more]
BLAST of Cp4.1LG11g09240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545328.13.69e-124100.00trafficking protein particle complex subunit 6B [Cucurbita pepo subsp. pepo][more]
XP_022961590.11.50e-12399.42trafficking protein particle complex subunit 6B [Cucurbita moschata] >XP_0229688... [more]
KAG7023966.11.78e-12299.42Trafficking protein particle complex subunit 6B, partial [Cucurbita argyrosperma... [more]
XP_004135644.11.10e-11897.66trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus][more]
XP_038878648.11.57e-11897.66trafficking protein particle complex subunit 6B [Benincasa hispida][more]
BLAST of Cp4.1LG11g09240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I0Q57.28e-12499.42trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCN47.28e-12499.42trafficking protein particle complex subunit 6B OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0M1M85.34e-11997.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1[more]
A0A5D3CG652.18e-11897.08Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. ... [more]
A0A1S3BP902.18e-11897.08trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=36... [more]
BLAST of Cp4.1LG11g09240 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05000.11.5e-8181.98Transport protein particle (TRAPP) component [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 5..172
e-value: 1.0E-60
score: 205.9
NoneNo IPR availablePANTHERPTHR12817:SF6TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6A-RELATEDcoord: 1..172
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 11..170
e-value: 2.1E-47
score: 160.6
IPR037992TRAPP complex, Trs33 subunitPANTHERPTHR12817TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6Bcoord: 1..172
IPR037992TRAPP complex, Trs33 subunitCDDcd14944TRAPPC6A_Trs33coord: 6..171
e-value: 3.29743E-84
score: 243.315
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 3..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g09240.1Cp4.1LG11g09240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0030008 TRAPP complex