Cp4.1LG11g09200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g09200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionSuperoxide dismutase [Cu-Zn]
LocationCp4.1LG11: 7718961 .. 7722186 (+)
RNA-Seq ExpressionCp4.1LG11g09200
SyntenyCp4.1LG11g09200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCCCTGAAGAATAGTAATGGAGCGAACAACCACACCACCGCTTGTCCTCTATATATAAACTGCAAGAGCCCTAAGGCTTTTCAACTTCTAGAGTCTTCTACTGCTTCAATATCTCCCGACCTTTCTTTCAGCCGTCCAAGGGGTGTTCTGAGGTGAGCCTTCCTCTCTTTCTCTCGTTTCTTCCATGATTCTTTGTTTCTCAGATCCATCGCTTTACTGAAATCTGATCTGATTTTTGCTGTATTATCTCCTTTGTTGTGATGATGTCTTGGCTGTAATTCTTCCGAAATTTTACCTTGATTCAGTTGTTATTGTGATGATCTTCTTTTGGATGATATGATATCTAGTTTCATCTCAAATTTCGAAATGATTTGATTCATCGCTTGTAACAGTGTGATTTTTTGTACTCTTTGATGCCGATCAAAACTATGATAGTTGTACCGAATTTTACCTTAATGATTCCATAACGTTGACTATTTGGAACTTTAGATTGCTACTTTACGTGATTTGAGATAGTACGAAACTTGTGGTATTCATCATAATCGGTCCAGATTTTATGTACAGCTCGCATAATTATGAGCTTGTTCTTGTTATTTTGAATTGGAGTCCTTTTCTAAGGTAAGGCTGGATTTCATTCTTTTACTTCTCTCGATGAAGTTGCAGTTTTTTTTTACCAAAAATTATTTGAGTCATTTCCGTACATGAGTTAGAGTTATGAAATGTCAAAATGCATGTTTTGCAAATAGATCGTGATCTGGTGTCATATTTTTTAAGTTTCTGATTTCTTTCGTTGATTTCGTGTTTTTCTTAGTTGTCTAATTTCGTTAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTATTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTAATATGGTGATTGGTTTCATATGTGCTTCTCATGTTCATTTCTTCTCTGTCTTGTACTTAAGACTGAAATTGTTTCAGGTCCAACCACGGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACCAACGGCTGCATGTCAACTGGTATTGCTATTGACATTTAGGATATTTTCATGACCTCTCTACTTTGAAGTAATTTAGATGTTTGTCAAACAGTTGAAAATAGATGCCGTCCTTTATCCAGCATGAATTTTTTTTTATTAGATCTCGGCAGTAAAATTTCTCAATATACTTACAGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGACGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGTACGCTTCACATAGAATAAGTTCAATTCTTGCTGTGTTATGTTCTATTTCCTTTTTGGCATAACCCCCTTATATTATACTTGTTGAGGCTATATTTGTAAGAATATGTTCTTATCTTAGATTTTCTTTGATATGTACCTAATCTGATGTTGGCTCTCATATCTTGTTCTATTTATTTAGTTGTTGAATACTAACACTTTCAACGTTGTGTACAGGAAAGGCTAGCTTTACCATTACTGATAACCAGGTATTTCCTGATGCTGCCCCTGTTTAATTAATTTTGTTAGGGAAAAACAATATGGTTCTTCCTCCTTTTTGTGTTAACATTAGATTTTACATGCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTGGTCCATGCTGACCCCGACGATCTTGGCAAGGGTAATTTCTCTAAGCATTTGTTGTTCGATAGTCCTTTGAGCTATTCTTGATAGTATCTCGTCCTATATCTTCCATATCCTAACTCAAGAAGATTATTGTCAATTAGTAAGGCTATTCCACAGAAAATTATTTATTTTCTTCAAAAAAATCCATAGTGATAATCTCCCATGTTTTGTTTAGTTTCTTTCATCTGCGGGGCTCATGAACAGGCTTATAGAACAGAAGTATGAACTGGATCAATTATATAATAGAGTTCAAATGATTATTTGGGGGCGGTTAGAACTCAGTTGTTGGGTTTGGATATTAGCACAAAACCAACTGTCTATCAATATTCAAAGGGGAAATAACATGGTAGGGATCAATTTTAGGACTCGGTGCTCGAAAACCATGTTAACTATCACTAAACTCTCAAAAGCATAAGCTGATAGGTAAGAGGAAAATAAGTAGGGTATCTTTCACTGAATTTTCTTCATGTTTCTAAGTATTGCTAGGTGCTTTGGAAAAACTTCAAAACATCTAAAAATGCTTTGTGAAAAAGCTTTTGTAGAGTGATTGATTGCACTCAAATGTGCTTTTAAGATTGTAAAATATTTGCTATTAAACACTTCTTACTAGTGTCTTTTTGCTTAAAGTATCATGAAGTATTATCTACCATGGGTTGTTGATGGGCCACCTACTTAGGATTTAATATTGTATGTGTTACTCTTTTAACCGAAATGTAGTAAAGTCGGATAGTTCTCTCACAAGAATAACGAAAATGTGTGCCAAATGTATCTTGAAGCGTTCCCAAACATGCCTCTTTATGTATTATCTTATCAATTGGGTAATTTTTGATATGTAGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGTATGCGAATTCAAACCATGAAATTTTTATACTGTTCTTCCATCCGGCCTTGCCCTATTAAGGTTATATGCCGTTCACCATATTTCTGAACCGTTTGACATCATTTCTTGTCTTTTTTTTTATTTATTTTCAGGCATTATTGGGTTGCAAGGTTGAAATTCGTTGCCGAATCGAATCCAAGTGCTCTAATGTTTCCAGGAAGAGTCCTAAACTCTTTTTATTGAATAAAAGCAAGGCATTGGATTGTTTTGTTCTGTTTGTGATGATAGATCTTTTACTTATCTGTTCTTGTCTGCTGTTTTATTAATATATATCTGGAATTTTAGTGTCTTCTTTTTAAGTCAAAATCATAAAAATTCGAAACAAACTAGAAGGCCTCACAGATTACAAGAACACTACGGTGATTCCTATCTTGAAGAACCAGATTAGATTCCAAACTTGTTTTGTTTGTAAGATGGGTCCACCTTATCACCTTTACCTTCCTTTTCCTGCAAATAGAACACTAGGGATGATTTGTCGATTTTATTTGATAGGAAGTGAAAGAATATAGAGAA

mRNA sequence

TACCCCTGAAGAATAGTAATGGAGCGAACAACCACACCACCGCTTGTCCTCTATATATAAACTGCAAGAGCCCTAAGGCTTTTCAACTTCTAGAGTCTTCTACTGCTTCAATATCTCCCGACCTTTCTTTCAGCCGTCCAAGGGGTGTTCTGAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTATTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTCCAACCACGGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACCAACGGCTGCATGTCAACTGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGACGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGAAAGGCTAGCTTTACCATTACTGATAACCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTGGTCCATGCTGACCCCGACGATCTTGGCAAGGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGGTTGCAAGGTTGAAATTCGTTGCCGAATCGAATCCAAGTGCTCTAATGTTTCCAGGAAGAGTCCTAAACTCTTTTTATTGAATAAAAGCAAGGCATTGGATTGTTTTGTTCTGTTTGTGATGATAGATCTTTTACTTATCTGTTCTTGTCTGCTGTTTTATTAATATATATCTGGAATTTTAGTGTCTTCTTTTTAAGTCAAAATCATAAAAATTCGAAACAAACTAGAAGGCCTCACAGATTACAAGAACACTACGGTGATTCCTATCTTGAAGAACCAGATTAGATTCCAAACTTGTTTTGTTTGTAAGATGGGTCCACCTTATCACCTTTACCTTCCTTTTCCTGCAAATAGAACACTAGGGATGATTTGTCGATTTTATTTGATAGGAAGTGAAAGAATATAGAGAA

Coding sequence (CDS)

ATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTATTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTCCAACCACGGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACCAACGGCTGCATGTCAACTGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGACGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGAAAGGCTAGCTTTACCATTACTGATAACCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTGGTCCATGCTGACCCCGACGATCTTGGCAAGGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGGTTGCAAGGTTGA

Protein sequence

MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Homology
[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy Swiss-Prot
Match: O22373 (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum OX=4072 GN=SODCC PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-73
Identity = 132/152 (86.84%), Postives = 141/152 (92.76%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SECV GTI FSQ+GD PTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPAGK+HGAPEDENRHAGDLGNITVGEDG ASFTITD QIPL+GP SIIGR VVVHA
Sbjct: 61  PHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHEL+ +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-73
Identity = 134/152 (88.16%), Postives = 141/152 (92.76%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SE V GTIFFSQEGDGPTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGK+HGAP D+NRHAGDLGNITVGEDG ASFTITD QIPL+G NS+IGRAVVVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy Swiss-Prot
Match: P23345 (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-72
Identity = 130/152 (85.53%), Postives = 140/152 (92.11%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG+SE V GTIFF+QEGDGPTTVTG VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPA K+HGAPEDENRHAGDLGN+T G DG A+  +TD+QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy Swiss-Prot
Match: P27082 (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 3.3e-72
Identity = 131/152 (86.18%), Postives = 141/152 (92.76%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SE V GTIFF+Q+GD PTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPAGK+HGAPEDE RHAGDLGNITVGEDG ASFT+TD QIPL+GP SIIGRAVVVHA
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy Swiss-Prot
Match: P23346 (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-71
Identity = 128/152 (84.21%), Postives = 139/152 (91.45%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG+S+ V GTIFF+QEGDGPT VTG VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPA K+HGAPEDENRHAGDLGN+T G DG A+  +TD+QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. NCBI nr
Match: XP_023545334.1 (superoxide dismutase [Cu-Zn] [Cucurbita pepo subsp. pepo] >XP_023545336.1 superoxide dismutase [Cu-Zn] [Cucurbita pepo subsp. pepo] >XP_023545337.1 superoxide dismutase [Cu-Zn] [Cucurbita pepo subsp. pepo] >AWW05328.1 superoxide dismutase [Cu-Zn] 2 [Cucurbita pepo])

HSP 1 Score: 312 bits (799), Expect = 2.81e-107
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. NCBI nr
Match: XP_022961402.1 (superoxide dismutase [Cu-Zn] isoform X1 [Cucurbita moschata] >XP_022961403.1 superoxide dismutase [Cu-Zn] isoform X1 [Cucurbita moschata] >XP_022961404.1 superoxide dismutase [Cu-Zn] isoform X1 [Cucurbita moschata] >XP_022968807.1 superoxide dismutase [Cu-Zn] [Cucurbita maxima] >XP_022968808.1 superoxide dismutase [Cu-Zn] [Cucurbita maxima] >XP_022968809.1 superoxide dismutase [Cu-Zn] [Cucurbita maxima] >KAG7023960.1 Superoxide dismutase [Cu-Zn] [Cucurbita argyrosperma subsp. argyrosperma] >AHF27437.1 superoxide dismutase [Cucurbita maxima])

HSP 1 Score: 311 bits (798), Expect = 3.99e-107
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. NCBI nr
Match: KAG6590411.1 (Superoxide dismutase [Cu-Zn]-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311 bits (798), Expect = 1.21e-106
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 33  MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 92

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 93  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 152

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 153 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 184

[Close]
BLAST of Cp4.1LG11g09200 vs. NCBI nr
Match: AHF27434.1 (superoxide dismutase [Cucurbita moschata])

HSP 1 Score: 309 bits (791), Expect = 4.66e-106
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNS CV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSVCVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. NCBI nr
Match: XP_022158885.1 (superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158886.1 superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158887.1 superoxide dismutase [Cu-Zn] [Momordica charantia])

HSP 1 Score: 292 bits (748), Expect = 1.69e-99
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG S+ V GTIFFSQEGDGPTTVTG+VSGLKAGLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGASDVVSGTIFFSQEGDGPTTVTGNVSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITD QIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDCQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSL+TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy TrEMBL
Match: A0A2Z4GT65 (Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 312 bits (799), Expect = 1.36e-107
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy TrEMBL
Match: W0FVL0 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=Cu PE=2 SV=1)

HSP 1 Score: 311 bits (798), Expect = 1.93e-107
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy TrEMBL
Match: A0A6J1HA41 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111461986 PE=3 SV=1)

HSP 1 Score: 311 bits (798), Expect = 1.93e-107
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy TrEMBL
Match: W0FW16 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=Cu PE=2 SV=1)

HSP 1 Score: 309 bits (791), Expect = 2.26e-106
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNS CV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSVCVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. ExPASy TrEMBL
Match: A0A6J1DX40 (Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111025346 PE=3 SV=1)

HSP 1 Score: 292 bits (748), Expect = 8.16e-100
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG S+ V GTIFFSQEGDGPTTVTG+VSGLKAGLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGASDVVSGTIFFSQEGDGPTTVTGNVSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITD QIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDCQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152
           DPDDLGKGGHELSL+TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 267.7 bits (683), Expect = 5.7e-72
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           M K VAVL +SE V GTIFF+QEGDG TTV+G VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNP GK HGAPED NRHAGDLGNITVG+DG A+FTITD QIPL+GPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSL+TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 267.7 bits (683), Expect = 5.7e-72
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 0 

Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           M K VAVL +SE V GTIFF+QEGDG TTV+G VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNP GK HGAPED NRHAGDLGNITVG+DG A+FTITD QIPL+GPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSL+TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

[Close]
BLAST of Cp4.1LG11g09200 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 204.1 bits (518), Expect = 7.8e-53
Identity = 98/148 (66.22%), Postives = 112/148 (75.68%), Query Frame = 0 

Query: 3   KAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGPH 62
           KAVAVL  +  V G +  +Q+  GPTTV   ++GL  G HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHADP 122
           FNP    HGAPEDE RHAGDLGNI    DG A  TI DNQIPL+GPNS++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGKGGHELSLSTGNAGARVACGIIGL 151
           DDLGKGGHELSL+TGNAG R+ACG+IGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]
BLAST of Cp4.1LG11g09200 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 201.4 bits (511), Expect = 5.0e-52
Identity = 96/150 (64.00%), Postives = 112/150 (74.67%), Query Frame = 0 

Query: 2   VKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL  G HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHAD 121
           HFNP  + HG P +E RHAGDLGNI  G +G A   I D  IPLSG  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSLSTGNAGARVACGIIGLQ 152
           PDDLGKGGH+LS STGNAG+RV CGIIGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]
BLAST of Cp4.1LG11g09200 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-40
Identity = 77/127 (60.63%), Postives = 91/127 (71.65%), Query Frame = 0 

Query: 2   VKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL  G HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHAD 121
           HFNP  + HG P +E RHAGDLGNI  G +G A   I D  IPLSG  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKG 129
           PDDLGKG
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g09200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O223731.0e-7386.84Superoxide dismutase [Cu-Zn] OS=Capsicum annuum OX=4072 GN=SODCC PE=2 SV=1[more]
Q077961.3e-7388.16Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2[more]
P233452.5e-7285.53Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2[more]
P270823.3e-7286.18Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 ... [more]
P233462.1e-7184.21Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2[more]
BLAST of Cp4.1LG11g09200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545334.12.81e-107100.00superoxide dismutase [Cu-Zn] [Cucurbita pepo subsp. pepo] >XP_023545336.1 supero... [more]
XP_022961402.13.99e-10799.34superoxide dismutase [Cu-Zn] isoform X1 [Cucurbita moschata] >XP_022961403.1 sup... [more]
KAG6590411.11.21e-10699.34Superoxide dismutase [Cu-Zn]-like protein, partial [Cucurbita argyrosperma subsp... [more]
AHF27434.14.66e-10698.68superoxide dismutase [Cucurbita moschata][more]
XP_022158885.11.69e-9994.08superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158886.1 superoxide di... [more]
BLAST of Cp4.1LG11g09200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2Z4GT651.36e-107100.00Superoxide dismutase [Cu-Zn] OS=Cucurbita pepo OX=3663 PE=2 SV=1[more]
W0FVL01.93e-10799.34Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=Cu PE=2 SV=1[more]
A0A6J1HA411.93e-10799.34Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111461986 PE=3 ... [more]
W0FW162.26e-10698.68Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=Cu PE=2 SV=1[more]
A0A6J1DX408.16e-10094.08Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111025346 PE=3... [more]
BLAST of Cp4.1LG11g09200 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08830.15.7e-7284.87copper/zinc superoxide dismutase 1 [more]
AT1G08830.25.7e-7284.87copper/zinc superoxide dismutase 1 [more]
AT2G28190.17.8e-5366.22copper/zinc superoxide dismutase 2 [more]
AT5G18100.15.0e-5264.00copper/zinc superoxide dismutase 3 [more]
AT5G18100.21.5e-4060.63copper/zinc superoxide dismutase 3 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 79..88
score: 75.15
coord: 43..65
score: 79.25
coord: 123..149
score: 74.91
coord: 98..120
score: 66.74
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 13..148
e-value: 4.7E-49
score: 166.1
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 2..145
e-value: 2.18223E-62
score: 186.697
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 1..152
e-value: 6.7E-68
score: 229.7
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 2..150
NoneNo IPR availablePANTHERPTHR10003:SF79SUPEROXIDE DISMUTASE [CU-ZN] 1coord: 1..152
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 1..152
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 43..53
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00332SOD_CU_ZN_2coord: 137..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g09200.1Cp4.1LG11g09200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0046872 metal ion binding