Cp4.1LG11g09040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g09040
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L18
Location	Cp4.1LG11: 7248057 .. 7250436 (-)
RNA-Seq Expression	Cp4.1LG11g09040
Synteny	Cp4.1LG11g09040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACATCATTTATGCCCTCGGCTTCCATAAAAAGGGTCTTCAAAAACCCTAGAGCCATTTTCCTCCCCCCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGTTTTCTCCACCATAAACGACAATGGTCAGTCTTTTTCTCTTTCTCTCTTTACTTCATTTTCTCTGCGTACAATGGCGTAGATCAATGTCTTAGATGCGTTTTCCATTTATTACAGGGGATAGATCTTGTAGCAGGCGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGGTTGGTTTTTTCTAATCGTCATTGGTTCCGCTGTACTCACTTGCTCTTGCATTTTTGTGGCTTTTTCTTAGCGAATGGTGATTAATGCGTATGGTTATTTTAAAATGAATTTGGTTTAACTTAAGATATCGCGAATGGAGAATGGAGTTTCAAATCTAATTTTGTGAGCATCATTTGGAACTTTATCCATTGTTATTTTTGTATTTGTTCTCTGCTCATATTTCGGTTTTTGGTTCTACATTTTTTTAACCTAGTTGTGTTTGAAATGTGGTTGTTTGATAAGAAAGTAAAGGAAATTTCATATGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTCCGTAGGTCTAGGAATGAACTAGTTCCACATTTATCTGAGCCCAGGTTTAGAGTTCAGTTTTCTAGTTTAATTTGAACAAGAACCAGGAGATGTCATTAATCATTGTCCATTAATAAACCTTGATTTCAAATTTTTAGTTTTGGAACCTTTTTTGCTCTCATGGAGTCAATGTTTTAGTTCTCATTCACTATATTTTGATTGGTATCCGACTATGTTCTCTTCCGCAATGATGAAATATGTGATACCCAGCTCATTATGAGACTTTTTTTAGGTCAAGGACTGGACTTCATCCACATATTTGTCTGAGCTCAAATTATTCTACTTTTGAAGTTTCTTTCATTTCATCTTGAATTCGGAAGTAAAGTGGATATGAAAAATATGGGTCATGCTTTCATTTCTGCTGTGTCCATTTACTTTTCGAGTCTCTGGCTTCTTTATCTATACATATCTGGAAGGAAGTTTAGACTTTTAATGGTGGACCAAGGCTTCTATCCATTCTGATAGAGAGATGGGTTGTTGTTCCCTGTGATGCTTCATTTTTCAAACCATGCTAATACTGATTACACGATGACTGATCTTCAACTTGTCACTGAGGGAACTAGCCTAGAGTCATAAATTTATTATTTCCAGTAGTGGTGCGTGTTTGTTTGCATATCCAAACTATTTGTAATAACCTTTTTTTTAGAAGCTTAGTAGTTCATTACCCTTATTTGGATTGCTTAAATCATTGGTCTTTAATCTTGTTTACTGAATTCAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCGATTTCAATGCTGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCACAAAGGGAAAGGTGTGTACTTCTATTTATGCACTACATGTTCTTAATATTTTGATTTCAGCCTTTCAGGAGTGTGTTATTTTCGATTGTCTAAATTCTCTGGTGATTAACATGGTATAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCTCTGAGGGCTCCTCTTGGCCAGAATACGGTACGATTACAAGTCCCATTTACTTTCTCTCACTCTCGAACACAACCTCTGATATGCAAAAGCAACTGTGTGCTTGGTATTTTATCAGTTCATGTTCATCTTAGAAGCCACCTGCATGTTGAACATTATGCACAAATGCTTGGATTCATGCTTAATCTTCTGTTAATTTTGCTTTCAAAGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGGCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAATTTCAGCATATGTTCGACCCTTTTTGTGAGACAAAAAATTCATGTTTTGCTAGACTTGCAGAGATATTATTATGAGACTCAGTTATGTCTTAGTACAAGTTTTCATTATTATAAAACCTTAATCGTATTCAGTGATAGATCTTGTTTAAATACTTTATTTTCTCTCTCTTGATTTTCATTGGATGATTTTATGAACGTCATTACACTTTT

mRNA sequence

TACATCATTTATGCCCTCGGCTTCCATAAAAAGGGTCTTCAAAAACCCTAGAGCCATTTTCCTCCCCCCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGTTTTCTCCACCATAAACGACAATGGGGATAGATCTTGTAGCAGGCGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCGATTTCAATGCTGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCACAAAGGGAAAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCTCTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGGCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAATTTCAGCATATGTTCGACCCTTTTTGTGAGACAAAAAATTCATGTTTTGCTAGACTTGCAGAGATATTATTATGAGACTCAGTTATGTCTTAGTACAAGTTTTCATTATTATAAAACCTTAATCGTATTCAGTGATAGATCTTGTTTAAATACTTTATTTTCTCTCTCTTGATTTTCATTGGATGATTTTATGAACGTCATTACACTTTT

Coding sequence (CDS)

ATGGGGATAGATCTTGTAGCAGGCGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCGATTTCAATGCTGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCACAAAGGGAAAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCTCTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGGCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAA

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKPPISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKRNSRGYRV

Homology

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 329.7 bits (844), Expect = 2.1e-89
Identity = 163/187 (87.17%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVRAKGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 8.1e-89
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S+FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.5e-82
Identity = 154/184 (83.70%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKPPIS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT S+FNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRLIK+ +GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR+KGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GYRV 188
           G+RV
Sbjct: 181 GFRV 183

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 290.8 bits (743), Expect = 1.1e-77
Identity = 148/188 (78.72%), Postives = 166/188 (88.30%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++  GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGYRV 188
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-64
Identity = 124/188 (65.96%), Postives = 157/188 (83.51%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGID +     +K  R  PKS+++YL LLVK+YRFL RR+G+ FN ++LKRLFMS++NKP
Sbjct: 1   MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKP 60

Query: 61  PISLSRLIKFTK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 120
            ISL+R+ +F K  G+E+ IAV+VGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE
Sbjct: 61  VISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGE 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARG 180
            LTFDQLA++AP G+ TVL++GP+NSREA +HFGPAPGVPHSHTKPYVR+KGRKFERARG
Sbjct: 121 ILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARG 180

Query: 181 KRNSRGYR 187
           +R SR Y+
Sbjct: 181 RRKSRRYK 187

[Close]

BLAST of Cp4.1LG11g09040 vs. NCBI nr
Match: XP_023545325.1 (60S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362 bits (929), Expect = 5.98e-126
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. NCBI nr
Match: XP_022946844.1 (60S ribosomal protein L18-3 [Cucurbita moschata])

HSP 1 Score: 359 bits (921), Expect = 9.92e-125
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. NCBI nr
Match: XP_023537655.1 (60S ribosomal protein L18-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357 bits (916), Expect = 5.74e-124
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRL+KF KGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLVKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357 bits (915), Expect = 8.15e-124
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKF KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. NCBI nr
Match: KAG6586240.1 (60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356 bits (914), Expect = 1.16e-123
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKF KGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy TrEMBL
Match: A0A6J1G525 (60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 SV=1)

HSP 1 Score: 359 bits (921), Expect = 4.80e-125
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 357 bits (915), Expect = 3.95e-124
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKF KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 355 bits (912), Expect = 1.13e-123
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FN+VILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKF KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy TrEMBL
Match: A0A6J1FC57 (60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 PE=3 SV=1)

HSP 1 Score: 353 bits (905), Expect = 1.32e-122
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKF KGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 2.67e-122
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+ KGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 187
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-90
Identity = 163/187 (87.17%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVRAKGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 327.8 bits (839), Expect = 5.7e-90
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S+FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.3e-53
Identity = 103/135 (76.30%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL+++  GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Cp4.1LG11g09040 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 205.3 bits (521), Expect = 4.3e-53
Identity = 103/135 (76.30%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL+++  GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42791	2.1e-89	87.17	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
Q940B0	8.1e-89	86.63	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
O65729	2.5e-82	83.70	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	1.1e-77	78.72	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4PM04	4.0e-64	65.96	60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g09040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545325.1	5.98e-126	100.00	60S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946844.1	9.92e-125	98.93	60S ribosomal protein L18-3 [Cucurbita moschata]	[more]
XP_023537655.1	5.74e-124	97.86	60S ribosomal protein L18-2 [Cucurbita pepo subsp. pepo]	[more]
XP_022965965.1	8.15e-124	98.40	60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote...	[more]
KAG6586240.1	1.16e-123	97.86	60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG11g09040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G525	4.80e-125	98.93	60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 S...	[more]
A0A6J1HQ85	3.95e-124	98.40	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A6J1KGZ8	1.13e-123	97.86	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=...	[more]
A0A6J1FC57	1.32e-122	97.33	60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 P...	[more]
A0A5A7U3L4	2.67e-122	96.79	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Cp4.1LG11g09040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05590.1	1.5e-90	87.17	ribosomal protein L18	[more]
AT5G27850.1	5.7e-90	86.63	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.1	4.3e-53	76.30	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	4.3e-53	76.30	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 1..187 e-value: 1.8E-99 score: 332.7
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..186
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 e-value: 6.9E-94 score: 312.5
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..186
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 20..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09040.1	Cp4.1LG11g09040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome