Cp4.1LG11g08860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g08860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pre-mRNA-splicing factor 38
Location	Cp4.1LG11: 7186774 .. 7190870 (+)
RNA-Seq Expression	Cp4.1LG11g08860
Synteny	Cp4.1LG11g08860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATTTGTTCTTCCAATTATCCATTTTTTCCACTCGTAATTCGGATGACATATTTCGCTATCCTCTCCCGTCCGGCGGTAGATTTAGGGTTTCGATCATTCTCCTCTGTCGATTAACCTGCACCGATACCGATACGGATTTTGCTGTTCTGGTTGTAATGGCAAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAATCCGCAGAACCTGGTGGAGAAGATTCTTCGCTCCAAGATCTATCAAAACAATTACTGGAAGGAGCAATGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAAGCCATGGAGCTCGACCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCCACGCCATTCATGTGTCTCGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTTATCGAGTTCATTAAGAACGAAGACTACAAGTAATTGTCATTGTCATTTTAGTTTTCAATGAATTATAACTTTGCATTTTTGTTACCTAGAAGCGTTTAGGAGTAGGGTTAATTAGAGGGAATATTTCAATTGTTTGTTTTATGGAGTTTAAAGAAACCATTATTTTGGGAACTTGCTGTGAAAATTAAATACTAGTAGGTCTGAGTTTTTGGAGTTGATCAGTGAATTGGAAATTAAGATTAGGATTGTGAATAAGTTAAGAACTTCTGCATGAACCCTATATTTGTTTATTGTGATTTGATAAGCATTGGAAATTCAGATTAGGCTTGTGGTTGAGCTAACTGAAGTACATTAGAATTGCTTTCTGTACCTCATGGTGTTCTGTAGTTCTAAAAGTTGTTGCTCACTCGCCCTAGTTTGCAATGATTGATTTTATACTGTATAGTCTTGTAAATGCGTTGTCTGCTTGGATTAAAATTCTTCTTCTGTCAGTTCATAAGTATGTTGTGTTAGTGAAATCTCTCTCTTGTAATTTCCTGTGGATGAATCTCTCTCTCTTGTAATTTCCTGTGGATGTTATGTTTATTTTCTAGTCTCTTTCAAGCATTCTTTTGAAAGTTACTTTTTTTTTTTTCTGGGGACATAGATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGACTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAGCCTCTATACAACGATTATCGGAAATTGAGGAGAAAATTAGCTGATGGATGTAAGATTCTGGGGCCTCTTTTTGAATTTTATCTAATTAGTTATTGTGAAAACGACTTGATTTTACTTTCTTGTCACGTTAATGTATTTCTAATTATGATCTCCTCTGTAAAAAAAGTCATGAACTTGTCTTATTTTTATCAGGTTTTTCTTTAACACACGTGGATGAAGTCATTGATGAACTTCTTACAAAAGATTATTCATGTGACATTGCTCTGCCACGTGTCAAAAAGAGGTATCGTACTGATTACTCATGTGACTATTTCCCAGTCAGTTTATTTTTCAAGTGGAAGTTGATAATGTCTTATTAAAATCAGGGCCTCAATAGAAATATGCATTATTCATTCTTTGACAAACAGAAGTACATGGATCACAAATTCTAAGTGTTGCTGTTCTGTTTCTCTCTCTCTTTTTTATGTGTCTCTAGTGTTCAGTTTTGAATGCGATGCTTCTTCTTGAAGTAACCTCAGTAAGATACGCTTTGTAATGGCAGATGGACCCTTGAATCTACTGGTTCACTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGATGTTGAGCCAATCAATGATTCTTTGGAAGATGATATTCATGAAAAGGTATAAACGCATTCTCTGTTTATATTTGTAAAAGCATCTAATTTTCATTTTCTTGTCCTTACTAACCCTTTTGAGGTCTTGCATCTGCAGAATTATTATCGAGGGAGAAGTCCTGTGCGAGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGTCTGATCCCCAGTCTTCTGTTTTCTGGTTTCTTCTCCTTCCCTGATATCTCATTTTTTATGTTTGCAACTGTGATGCTCTTTCTAAATTTGTGAATATTTCCTCCTGTGGAGGGTTCCATTGATTGATATCTCCAGTCTATTAGCTGCCTTCATTTAGTGAATCGCATAAATTTTTCGTTGAATGGGAAGTATAAGGTCCAAGGCCAAATTCAACAATTTTGAGCTCAATTTGTCTTTTGCTTGAGTCTTTTGTTGCCAATGCTATTCTCTTAGTAGAGTTGGTGCTGGCTAAAGTTGAAAAATTAGATCAAACAAAAATTAGGAGATGAATAGGAGAATGGATGTTGTGGCTCAGCCTGGAGTTATCTACCTGGTCTGGAAATCCATGCTATTGCCTATCTTGGGACTGGATTGGGTTTATTAGTTGCTTCTAAGCTCGTGCCCTTTTGACCACCGCACGTAGATAAAGCTGATTGCTAAGTTGGTTTTGGTTTTGGTTTTTGACCATGCCTCTTCTTTGAGTGCTAATTTAACTAAAACGGATCCTTACTTGATCTGGTTCTTTTTAAACTGATTTTGATGAACTCTGGGGAAATTTTCATTTATTTATTTATTTTTACGTATTTTTTAAAATTACGGAGCTGGAAGCAGTCTGAATCTGTAATTCTTGGATTGTTATCCATACTGCATTAACATTCATATGTTTTCTGTCACAACCATGGCATTTCAAGCCGTTGGTTGCTCGCTGCTTCCTACAGTAAATTCGCAAGGTCCTGCCAGGTTTCTCTGTACTGACAGTGTGCAGCTGAGAAGTATGATGGATCGTACATATATTTTTCATAGTGATTTTTTTTCTCAACTTTATTTTTGTATTGCCTTCAATGATATCTTGGTGACCATACAGGCTACAGCTGAGAACTACTCATATGCTTTTCCTTTTTCATTTTCATCTATTATTTTGATTATTTTTCGGGCAACATCGAGTTTGTATTTGGTGTTCTACCCGAATGTTAAACCTTTCTGTATCTTATGCTTTTCCTGTGAAATTACCTGTTCCATGCATCCAGGATAGGATATTTTATTCTCCATATTTTGATCCTAAAATCCATGTCCATAATGCATTGCTTACTTGCATTTATGAGCTGTCTTACTGCATCGTTCCATTGAGTGGGAAGAATTTGATCTTTTGATACACCACATTGTTCCTTTGTTTTATCACAGGGACCGAGATTATGAAAGAGACCGGGATAATGATAGAGACTATGATAGAGATCGGGGTCGTGGAAGGGAAAGAGATAGAGATCGAGAAAGGGATCGAGATCGGGATCGGGATAGGGACAGGGATAGAGACAGAGATAGGGATAGGGATCGCTATCACCTTAGGGATGAGAAGGAATATGGCAGAGATCGAGATAGGGAAAGAGAAGGCAGGGAGAGGGAGAGGGAGAGGGAGAGGCGAGACAGAGATCGTGGTCGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGAGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCATTAGTCCTAGAAGAAGGAACGGGGCAGAGGATAGAGAGGAGCCGAAGAGGAAGAAGGAAAAGAAAGAGAAGAAGGGAGACGGAGCAGGCGAGGAAGACCCCGAAATCGCAGAATGGAACAGAATTCGTGCTTCTCTTGGAATGGCACCTCTGAAGTAGATGTTTGTTGTTGTTGTTGTTGTTGTTCAGTTTGAATGAAGTGCGAGCGAGTGAATCATGTTGCATAACTGAAGTTAGAGGTTGTTGTTATCCATATGAGGAGAAGAGGCTTAAGGTTGTCTGTTTTGTGTATAATATTTGTTTAGTGCTATTACTGTGTTTGTTTGAATGATAATATAAAAATTACATTTGGAAATAGAATAATGTTGGAAGGGTTTGGGTATTTATTTGTTTTATTGGAGTGTAAAGTGGTGTTAGCCAGTGAGTCGTCCACCACCAAAGTTGGTATTGTTAATTACAAAGAATCCATATGTGCTAAGGTAATGAAAGCATTATGTTATAATTGGGTTCTTTAATCACCGAGGAGAGACAGAGTCCATCCACTTTGGAATTGGAAACACTC

mRNA sequence

TCATTTGTTCTTCCAATTATCCATTTTTTCCACTCGTAATTCGGATGACATATTTCGCTATCCTCTCCCGTCCGGCGGTAGATTTAGGGTTTCGATCATTCTCCTCTGTCGATTAACCTGCACCGATACCGATACGGATTTTGCTGTTCTGGTTGTAATGGCAAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAATCCGCAGAACCTGGTGGAGAAGATTCTTCGCTCCAAGATCTATCAAAACAATTACTGGAAGGAGCAATGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAAGCCATGGAGCTCGACCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCCACGCCATTCATGTGTCTCGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTTATCGAGTTCATTAAGAACGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGACTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAGCCTCTATACAACGATTATCGGAAATTGAGGAGAAAATTAGCTGATGGATGTTTTTCTTTAACACACGTGGATGAAGTCATTGATGAACTTCTTACAAAAGATTATTCATGTGACATTGCTCTGCCACGTGTCAAAAAGAGATGGACCCTTGAATCTACTGGTTCACTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGATGTTGAGCCAATCAATGATTCTTTGGAAGATGATATTCATGAAAAGAATTATTATCGAGGGAGAAGTCCTGTGCGAGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGGACCGAGATTATGAAAGAGACCGGGATAATGATAGAGACTATGATAGAGATCGGGGTCGTGGAAGGGAAAGAGATAGAGATCGAGAAAGGGATCGAGATCGGGATCGGGATAGGGACAGGGATAGAGACAGAGATAGGGATAGGGATCGCTATCACCTTAGGGATGAGAAGGAATATGGCAGAGATCGAGATAGGGAAAGAGAAGGCAGGGAGAGGGAGAGGGAGAGGGAGAGGCGAGACAGAGATCGTGGTCGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGAGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCATTAGTCCTAGAAGAAGGAACGGGGCAGAGGATAGAGAGGAGCCGAAGAGGAAGAAGGAAAAGAAAGAGAAGAAGGGAGACGGAGCAGGCGAGGAAGACCCCGAAATCGCAGAATGGAACAGAATTCGTGCTTCTCTTGGAATGGCACCTCTGAAGTAGATGTTTGTTGTTGTTGTTGTTGTTGTTCAGTTTGAATGAAGTGCGAGCGAGTGAATCATGTTGCATAACTGAAGTTAGAGGTTGTTGTTATCCATATGAGGAGAAGAGGCTTAAGGTTGTCTGTTTTGTGTATAATATTTGTTTAGTGCTATTACTGTGTTTGTTTGAATGATAATATAAAAATTACATTTGGAAATAGAATAATGTTGGAAGGGTTTGGGTATTTATTTGTTTTATTGGAGTGTAAAGTGGTGTTAGCCAGTGAGTCGTCCACCACCAAAGTTGGTATTGTTAATTACAAAGAATCCATATGTGCTAAGGTAATGAAAGCATTATGTTATAATTGGGTTCTTTAATCACCGAGGAGAGACAGAGTCCATCCACTTTGGAATTGGAAACACTC

Coding sequence (CDS)

ATGGCAAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAATCCGCAGAACCTGGTGGAGAAGATTCTTCGCTCCAAGATCTATCAAAACAATTACTGGAAGGAGCAATGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAAGCCATGGAGCTCGACCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCCACGCCATTCATGTGTCTCGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTTATCGAGTTCATTAAGAACGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGACTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAGCCTCTATACAACGATTATCGGAAATTGAGGAGAAAATTAGCTGATGGATGTTTTTCTTTAACACACGTGGATGAAGTCATTGATGAACTTCTTACAAAAGATTATTCATGTGACATTGCTCTGCCACGTGTCAAAAAGAGATGGACCCTTGAATCTACTGGTTCACTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGATGTTGAGCCAATCAATGATTCTTTGGAAGATGATATTCATGAAAAGAATTATTATCGAGGGAGAAGTCCTGTGCGAGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGGACCGAGATTATGAAAGAGACCGGGATAATGATAGAGACTATGATAGAGATCGGGGTCGTGGAAGGGAAAGAGATAGAGATCGAGAAAGGGATCGAGATCGGGATCGGGATAGGGACAGGGATAGAGACAGAGATAGGGATAGGGATCGCTATCACCTTAGGGATGAGAAGGAATATGGCAGAGATCGAGATAGGGAAAGAGAAGGCAGGGAGAGGGAGAGGGAGAGGGAGAGGCGAGACAGAGATCGTGGTCGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGAGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCATTAGTCCTAGAAGAAGGAACGGGGCAGAGGATAGAGAGGAGCCGAAGAGGAAGAAGGAAAAGAAAGAGAAGAAGGGAGACGGAGCAGGCGAGGAAGACCCCGAAATCGCAGAATGGAACAGAATTCGTGCTTCTCTTGGAATGGCACCTCTGAAGTAG

Protein sequence

MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPARKSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRDYERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK

Homology

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BLAST of Cp4.1LG11g08860 vs. ExPASy Swiss-Prot
Match: Q8LB54 (Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 2.0e-129
Identity = 273/406 (67.24%), Postives = 313/406 (77.09%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+ +WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRK+R+KL+DG FSLTHVDEVI+ELLTKDYSCDIA+PR+KKRWTLE  G L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKE+ E I D  ED++ +    R +SP RER+RDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQ----RRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 YER----DRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEY 300
           Y+R    DRD+DRDY+R+RG GR+RDR+R+RD  R+RDRDR+R RDR+RDR         
Sbjct: 241 YDRDYDMDRDHDRDYERERGHGRDRDRERDRDHYRERDRDRERGRDRERDR--------- 300

Query: 301 GRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRN 360
                                RDR RRRS SRSR           RKRH    +      
Sbjct: 301 ---------------------RDRARRRSRSRSRD----------RKRHETDDV------ 354

Query: 361 GAEDREEPKRKKEKKEK-KGDGAGEEDPEIAEWNRIRASLGMAPLK 402
              DREEPK+KKEKKEK K DG    +PEIAE NR+RASLGM PL+
Sbjct: 361 --RDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

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BLAST of Cp4.1LG11g08860 vs. ExPASy Swiss-Prot
Match: Q7JVL3 (Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.0e-64
Identity = 177/340 (52.06%), Postives = 224/340 (65.88%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   AK++ GTNPQ L+EKI+RS+IY + YWKEQCF LTAE LVDKAMEL  +GG 
Sbjct: 1   MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPT F+CL +KMLQIQPEK+IV+EFIKNE++KYVR LGAFYLRLTG  +D Y+YL
Sbjct: 61  YGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGAALDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLY D RKLRR+   G F + ++DE IDELL  D  CDI LPR++KR  LE    +  +
Sbjct: 121 EPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSILEENNEIEPK 180

Query: 181 KSALEDDFEEE--EEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRR-DSHRHR 240
            S L++D ++E   ++E  +  N   E+    +   R RS  R R R+R+RR    +  R
Sbjct: 181 VSVLDEDLDDELPSDEEKADETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSAR 240

Query: 241 DRDYERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDR-DRDRDRDRDRYHLRDEKEY 300
            RDY    D   DYDR R R R RD   E D DR ++  R DR+R+R +DR  +R+    
Sbjct: 241 SRDY---YDELEDYDRQRNRVRNRDTHNE-DYDRRQNNGRHDRERER-QDRDSIRE---- 300

Query: 301 GRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDR 337
            R+RD +R+ R+RERERE   RDRGR     R     +DR
Sbjct: 301 -RERDGDRDRRDRERERE---RDRGRHDQRERDSRGERDR 327

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy Swiss-Prot
Match: Q4FZQ6 (Pre-mRNA-splicing factor 38A OS=Xenopus laevis OX=8355 GN=prpf38a PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 8.1e-62
Identity = 163/326 (50.00%), Postives = 203/326 (62.27%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A S+ GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR LGA Y+RLTGT  D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRK++ +  DG F L HVDE ID+LL ++  CD+ LPR++KR+ LE T  L  R
Sbjct: 121 EPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR 180

Query: 181 KSALE---DDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHR 240
            SALE   DD E  EE+ED +        + H +NY         RD DR RR  S R+R
Sbjct: 181 VSALEEDMDDVESSEEEEDDDEKGRDPSPEHHRRNY---------RDLDRPRRSPSPRYR 240

Query: 241 DRDYERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYG 300
                  R   R   R R R  +R       R+R R +   R R R R+R H    K  G
Sbjct: 241 -------RSRSRS-PRRRSRSPKRRSPSPPRRERHRSKSPRRHRSRSRERRHRSKSKSPG 300

Query: 301 RDRDREREGRERERERERRDRDRGRR 324
             R        +  ER ++   + RR
Sbjct: 301 HHRSHRHRSHSKSPERSKKSHKKSRR 309

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy Swiss-Prot
Match: Q28H87 (Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis OX=8364 GN=prpf38a PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-61
Identity = 162/326 (49.69%), Postives = 204/326 (62.58%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A S+ GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL ++GG 
Sbjct: 1   MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR LGA Y+RLTGT  D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRTLGALYMRLTGTATDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE ID+LL ++  CD+ LPR++KR+ LE T  L  R
Sbjct: 121 EPLYNDYRKVKVQNRNGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR 180

Query: 181 KSALE---DDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHR 240
            SALE   DD E  EE+ED +        + H +NY         RD DR RR  S R+R
Sbjct: 181 VSALEEDMDDVESSEEEEDEDEKGRDPSPEHHRRNY---------RDLDRPRRSPSPRYR 240

Query: 241 DRDYERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYG 300
                  R   R   R R R  +R       R+R R +   R R R R+R H    K  G
Sbjct: 241 -------RSRSRS-PRRRSRSPKRRSPSPPRRERHRSKSPRRHRSRSRERRHRSKSKSPG 300

Query: 301 RDRDREREGRERERERERRDRDRGRR 324
             R        +  ER ++   + RR
Sbjct: 301 HHRSHRHRSHSKSPERSKKSHKKSRR 309

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy Swiss-Prot
Match: Q0P5I6 (Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.2e-61
Identity = 162/326 (49.69%), Postives = 205/326 (62.88%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR+ LE    L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLE---DDIHEKNYYRGRSPVRERDRDRDRRRDSHRHR 240
            SALE+D ++ E  E+ E  ++ LE      H +  Y        RD D+ RR  + R+R
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSY--------RDLDKPRRSPTLRYR 240

Query: 241 DRDYERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYG 300
                  R   R   R R R  +R R     R+R R +   R R R RDR H    K  G
Sbjct: 241 -------RSRSRS-PRRRSRSPKR-RSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPG 300

Query: 301 RDRDREREGRERERERERRDRDRGRR 324
             R        +  ER ++   + RR
Sbjct: 301 HHRSHRHRSHSKSPERSKKSHKKSRR 309

[Close]

BLAST of Cp4.1LG11g08860 vs. NCBI nr
Match: XP_023545282.1 (pre-mRNA-splicing factor 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 735 bits (1897), Expect = 2.51e-266
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300
           YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR
Sbjct: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300

Query: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360
           DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED
Sbjct: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360

Query: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK
Sbjct: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401

[Close]

BLAST of Cp4.1LG11g08860 vs. NCBI nr
Match: XP_022946772.1 (pre-mRNA-splicing factor 38-like [Cucurbita moschata])

HSP 1 Score: 727 bits (1876), Expect = 3.69e-263
Identity = 399/401 (99.50%), Postives = 399/401 (99.50%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300
           YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR
Sbjct: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300

Query: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360
           DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED
Sbjct: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360

Query: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK
Sbjct: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 399

[Close]

BLAST of Cp4.1LG11g08860 vs. NCBI nr
Match: KAG7030134.1 (Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 717 bits (1850), Expect = 3.92e-259
Identity = 399/405 (98.52%), Postives = 399/405 (98.52%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDR--YHLRDEKEYGR 300
           YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDR  YHLRDEKEYGR
Sbjct: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGR 300

Query: 301 DRDREREGRERERERER--RDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRN 360
           DRDREREGRERERERER  RDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRN
Sbjct: 301 DRDREREGRERERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRN 360

Query: 361 GAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           GAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK
Sbjct: 361 GAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 403

[Close]

BLAST of Cp4.1LG11g08860 vs. NCBI nr
Match: KAG6599199.1 (Pre-mRNA-splicing factor 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 714 bits (1844), Expect = 3.47e-258
Identity = 398/407 (97.79%), Postives = 399/407 (98.03%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDR--YHLRDEKEYGR 300
           YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDR  YHLRDEKEYGR
Sbjct: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGR 300

Query: 301 DRDREREGRERERERER----RDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRR 360
           DRDREREGRERERERER    RDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSSISPRR
Sbjct: 301 DRDREREGRERERERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSISPRR 360

Query: 361 RNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           RNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK
Sbjct: 361 RNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 405

[Close]

BLAST of Cp4.1LG11g08860 vs. NCBI nr
Match: XP_022999384.1 (pre-mRNA-splicing factor 38-like [Cucurbita maxima])

HSP 1 Score: 692 bits (1786), Expect = 1.41e-249
Identity = 384/401 (95.76%), Postives = 388/401 (96.76%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAK+IRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKNIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTH+DEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHMDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPINDSLE DIHEKNYYRGRSPVRERDRDR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEGDIHEKNYYRGRSPVRERDRDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300
           YERDRD     DRDRGRGRERDRDRERDRDRDRDRDRDRDRDR    YHLRDEKEYGRDR
Sbjct: 241 YERDRD----IDRDRGRGRERDRDRERDRDRDRDRDRDRDRDR----YHLRDEKEYGRDR 300

Query: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360
           DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRRRNG ED
Sbjct: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSVSPRRRNGVED 360

Query: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK
Sbjct: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 391

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy TrEMBL
Match: A0A6J1G4M6 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 SV=1)

HSP 1 Score: 727 bits (1876), Expect = 1.79e-263
Identity = 399/401 (99.50%), Postives = 399/401 (99.50%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300
           YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR
Sbjct: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300

Query: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360
           DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED
Sbjct: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360

Query: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK
Sbjct: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 399

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy TrEMBL
Match: A0A6J1KGY3 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=1)

HSP 1 Score: 692 bits (1786), Expect = 6.82e-250
Identity = 384/401 (95.76%), Postives = 388/401 (96.76%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAK+IRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKNIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKLADGCFSLTH+DEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHMDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPINDSLE DIHEKNYYRGRSPVRERDRDR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEGDIHEKNYYRGRSPVRERDRDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300
           YERDRD     DRDRGRGRERDRDRERDRDRDRDRDRDRDRDR    YHLRDEKEYGRDR
Sbjct: 241 YERDRD----IDRDRGRGRERDRDRERDRDRDRDRDRDRDRDR----YHLRDEKEYGRDR 300

Query: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAED 360
           DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRRRNG ED
Sbjct: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSVSPRRRNGVED 360

Query: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK
Sbjct: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 391

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy TrEMBL
Match: A0A1S3BXB0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1)

HSP 1 Score: 677 bits (1746), Expect = 1.06e-243
Identity = 375/403 (93.05%), Postives = 387/403 (96.03%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRRKL+DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+GSLP R
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKE+ EPINDSLEDDIHEKNYYRGRSPVRERDRDR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDR--DRDRDRYHLRDEKEYGR 300
           Y+RDRD DRDYDRDRGRGRERDRDRERDRDR+RDRDRDR+R  DRDRDRY LRDEKEYGR
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRDRERDRDRERDRDRDRERERDRDRDRYRLRDEKEYGR 300

Query: 301 DRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGA 360
           DRDREREGRER    ERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRRR+G 
Sbjct: 301 DRDREREGRER----ERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGV 360

Query: 361 EDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           EDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 EDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 397

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy TrEMBL
Match: A0A6J1FBK8 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 SV=1)

HSP 1 Score: 665 bits (1717), Expect = 3.08e-239
Identity = 373/406 (91.87%), Postives = 384/406 (94.58%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRR+LADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRW LESTGSLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPIND+LED+IHEKNYYRGRSPVRERD+DR  R DSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDR--RHDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDR----DRDRDRDRYHLRDEKEY 300
           Y+RDRD DRDYDRDRGRGRERDRDR+RDRDRDRDRDRDR    DRDRDRDRY LRD+KEY
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRDRDRDRDRDRDRDRDRGRDRDRDRDRDRYRLRDDKEY 300

Query: 301 GRDRDREREGRERERERERRDRDR-GRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRR 360
            RDRDREREGRER    ERRDRD  GRRRSHSRSRSRSKDREDGEYRKRH RSS SPRRR
Sbjct: 301 SRDRDREREGRER----ERRDRDHHGRRRSHSRSRSRSKDREDGEYRKRHARSSASPRRR 360

Query: 361 NGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           +GAEDR+EPKRKKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 DGAEDRDEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 400

[Close]

BLAST of Cp4.1LG11g08860 vs. ExPASy TrEMBL
Match: A0A6J1HPQ9 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=1)

HSP 1 Score: 665 bits (1715), Expect = 5.36e-239
Identity = 370/402 (92.04%), Postives = 382/402 (95.02%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRKLRR+LADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRW LESTGSLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEDVEPIND+LED+IHEKNYYRGRSPVRERD+DR  RRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDR--RRDSHRHRDRD 240

Query: 241 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300
           Y+RDRD DRDYDRDRGRGRERDRDR+RDRDRDRDRDR RDRDRDRDRY LRD+KEY RDR
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRDRDRDRDRDRDRDRGRDRDRDRDRYRLRDDKEYSRDR 300

Query: 301 DREREGRERERERERRDRDR-GRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAE 360
           D EREGRER    ERRDRD  GRRRSHSR+RSRSKDREDGEYRKRH R S SPRRR+GAE
Sbjct: 301 DGEREGRER----ERRDRDHHGRRRSHSRNRSRSKDREDGEYRKRHARCSASPRRRDGAE 360

Query: 361 DREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401
           DR+EPKRKKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 DRDEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 396

[Close]

BLAST of Cp4.1LG11g08860 vs. TAIR 10
Match: AT2G40650.1 (PRP38 family protein )

HSP 1 Score: 463.8 bits (1192), Expect = 1.4e-130
Identity = 273/406 (67.24%), Postives = 313/406 (77.09%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+ +WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180
           EPLYNDYRK+R+KL+DG FSLTHVDEVI+ELLTKDYSCDIA+PR+KKRWTLE  G L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKE+ E I D  ED++ +    R +SP RER+RDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQ----RRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 YER----DRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEY 300
           Y+R    DRD+DRDY+R+RG GR+RDR+R+RD  R+RDRDR+R RDR+RDR         
Sbjct: 241 YDRDYDMDRDHDRDYERERGHGRDRDRERDRDHYRERDRDRERGRDRERDR--------- 300

Query: 301 GRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRN 360
                                RDR RRRS SRSR           RKRH    +      
Sbjct: 301 ---------------------RDRARRRSRSRSRD----------RKRHETDDV------ 354

Query: 361 GAEDREEPKRKKEKKEK-KGDGAGEEDPEIAEWNRIRASLGMAPLK 402
              DREEPK+KKEKKEK K DG    +PEIAE NR+RASLGM PL+
Sbjct: 361 --RDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

[Close]

BLAST of Cp4.1LG11g08860 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 50.1 bits (118), Expect = 4.9e-06
Identity = 102/340 (30.00%), Postives = 160/340 (47.06%), Query Frame = 0


Query: 18  QNLVEKILRSKIYQNNYWKEQCFGL-TAETLVDKAM-ELDHLGGTYGGN-RKPTPFMCLV 77
           ++L+EK+L   I  ++Y+KE  +GL T   ++D+   +++H+    GGN R P+   CL+
Sbjct: 12  ESLLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPSTAYCLL 71

Query: 78  MKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKL 137
            K   ++   + +   +K+ D  Y+R +G  YLR       ++ + EP   D  +     
Sbjct: 72  YKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEEFSPG- 131

Query: 138 ADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTG-----SLPARKSALEDDFE 197
           ++G   +T +   + +LL   Y  D   PR+      +        +LP + S    D  
Sbjct: 132 SNG--RMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGSTGDMT 191

Query: 198 EEEEKEDVEP--INDSLEDDIHEKNYY----RGRSPVRE-----RDR---DRDRRRDSHR 257
              E     P  +  SL     ++  +    RG SPVR       DR   D  ++R   R
Sbjct: 192 RGSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVRRPPPTGYDRNGGDEVQQRSPRR 251

Query: 258 HRDRDYERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKE 317
            + RDY  DRD+D          R+R+R+RE+DR+R+R RDR R+R+RD           
Sbjct: 252 SQSRDYYSDRDSD----------RQREREREKDRERERGRDRYRERERD----------- 311

Query: 318 YGRDRDREREGRERERERE-RRDRDRGRRRSHSRSRSRSK 335
           YG DR   R+   R R  +   DR R  RRS SRSRSRS+
Sbjct: 312 YGNDRRSRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSR 326

[Close]

BLAST of Cp4.1LG11g08860 vs. TAIR 10
Match: AT5G37370.2 (PRP38 family protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-05
Identity = 100/335 (29.85%), Postives = 159/335 (47.46%), Query Frame = 0


Query: 18  QNLVEKILRSKIYQNNYWKEQCFGL-TAETLVDKAM-ELDHLGGTYGGN-RKPTPFMCLV 77
           ++L+EK+L   I  ++Y+KE  +GL T   ++D+   +++H+    GGN R P+   CL+
Sbjct: 12  ESLLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPSTAYCLL 71

Query: 78  MKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKL 137
            K   ++   + +   +K+ D  Y+R +G  YLR       ++ + EP   D  +     
Sbjct: 72  YKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEEFSPG- 131

Query: 138 ADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPARKSALEDDFEEEEEK 197
           ++G  +   V    D L  +     I +P +++  +     +LP + S    D     E 
Sbjct: 132 SNGRMTTMGVYYYFDTLFPR-----IPVPVMRQIVSNLEKMNLPTKPSGSTGDMTRGSED 191

Query: 198 EDVEP--INDSLEDDIHEKNYY----RGRSPVRE-----RDR---DRDRRRDSHRHRDRD 257
               P  +  SL     ++  +    RG SPVR       DR   D  ++R   R + RD
Sbjct: 192 TARRPPSVKASLSVSFGQRAPHRASTRGSSPVRRPPPTGYDRNGGDEVQQRSPRRSQSRD 251

Query: 258 YERDRDNDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 317
           Y  DRD+D          R+R+R+RE+DR+R+R RDR R+R+RD           YG DR
Sbjct: 252 YYSDRDSD----------RQREREREKDRERERGRDRYRERERD-----------YGNDR 311

Query: 318 DREREGRERERERE-RRDRDRGRRRSHSRSRSRSK 335
              R+   R R  +   DR R  RRS SRSRSRS+
Sbjct: 312 RSRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSR 318

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g08860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB54	2.0e-129	67.24	Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1	[more]
Q7JVL3	1.0e-64	52.06	Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=...	[more]
Q4FZQ6	8.1e-62	50.00	Pre-mRNA-splicing factor 38A OS=Xenopus laevis OX=8355 GN=prpf38a PE=2 SV=1	[more]
Q28H87	1.1e-61	49.69	Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis OX=8364 GN=prpf38a PE=2 SV=1	[more]
Q0P5I6	5.2e-61	49.69	Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1	[more]

BLAST of Cp4.1LG11g08860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545282.1	2.51e-266	100.00	pre-mRNA-splicing factor 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946772.1	3.69e-263	99.50	pre-mRNA-splicing factor 38-like [Cucurbita moschata]	[more]
KAG7030134.1	3.92e-259	98.52	Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6599199.1	3.47e-258	97.79	Pre-mRNA-splicing factor 38, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022999384.1	1.41e-249	95.76	pre-mRNA-splicing factor 38-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG11g08860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4M6	1.79e-263	99.50	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 S...	[more]
A0A6J1KGY3	6.82e-250	95.76	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=...	[more]
A0A1S3BXB0	1.06e-243	93.05	Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1	[more]
A0A6J1FBK8	3.08e-239	91.87	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 S...	[more]
A0A6J1HPQ9	5.36e-239	92.04	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=...	[more]

BLAST of Cp4.1LG11g08860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40650.1	1.4e-130	67.24	PRP38 family protein	[more]
AT5G37370.1	4.9e-06	30.00	PRP38 family protein	[more]
AT5G37370.2	1.4e-05	29.85	PRP38 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 10..173 e-value: 1.5E-61 score: 207.3
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..394
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..203
None	No IPR available	PANTHER	PTHR23142:SF1	PRE-MRNA-SPLICING FACTOR 38A	coord: 1..394

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g08860.1	Cp4.1LG11g08860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome