Cp4.1LG11g08650 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g08650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG11: 7031732 .. 7031935 (-)
RNA-Seq ExpressionCp4.1LG11g08650
SyntenyCp4.1LG11g08650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCGTGACGGACCAGACTAGGTCGTCGACGATCGGAAGGCTGAGAAGGCCGTTAGGCCAGCGGCGGAACCAGGCGGAACTCCAGTTCCATGAGAAGAGCGAGGAGAGGACGTCGCTCCACTGGAATGGCGATCTTGGTAACCTTCCCGCCATTGCCGCTCCTTCGTCTTCCTGA

mRNA sequence

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCGTGACGGACCAGACTAGGTCGTCGACGATCGGAAGGCTGAGAAGGCCGTTAGGCCAGCGGCGGAACCAGGCGGAACTCCAGTTCCATGAGAAGAGCGAGGAGAGGACGTCGCTCCACTGGAATGGCGATCTTGGTAACCTTCCCGCCATTGCCGCTCCTTCGTCTTCCTGA

Coding sequence (CDS)

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCGTGACGGACCAGACTAGGTCGTCGACGATCGGAAGGCTGAGAAGGCCGTTAGGCCAGCGGCGGAACCAGGCGGAACTCCAGTTCCATGAGAAGAGCGAGGAGAGGACGTCGCTCCACTGGAATGGCGATCTTGGTAACCTTCCCGCCATTGCCGCTCCTTCGTCTTCCTGA

Protein sequence

METKATDSKAVVTDQTRSSTIGRLRRPLGQRRNQAELQFHEKSEERTSLHWNGDLGNLPAIAAPSSS
Homology
BLAST of Cp4.1LG11g08650 vs. NCBI nr
Match: KAA0048079.1 (hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 3.11e-18
Identity = 50/81 (61.73%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 1  METKATDSKAVVTDQTRSSTIGRLRRPLGQRRNQAE-LQFHEKSEERTSLHWN------- 60
          METKATDSKAVVTDQ  SST+  LRRP  QRRNQAE LQFHEKSEER S+H N       
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 -------GDLGNLPAIAAPSS 66
                  DLG++PAIA  +S
Sbjct: 61 SNSVQRNADLGDVPAIALSAS 81

BLAST of Cp4.1LG11g08650 vs. ExPASy TrEMBL
Match: A0A5A7U3P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001510 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.51e-18
Identity = 50/81 (61.73%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 1  METKATDSKAVVTDQTRSSTIGRLRRPLGQRRNQAE-LQFHEKSEERTSLHWN------- 60
          METKATDSKAVVTDQ  SST+  LRRP  QRRNQAE LQFHEKSEER S+H N       
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 -------GDLGNLPAIAAPSS 66
                  DLG++PAIA  +S
Sbjct: 61 SNSVQRNADLGDVPAIALSAS 81

BLAST of Cp4.1LG11g08650 vs. ExPASy TrEMBL
Match: A0A0A0LGJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.09e-13
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 1  METKATDSKAVVTDQTRSSTIGRLRRPLGQRRNQAE-LQFHEKSEERTSL 49
          METKATDSKAVVTDQ  SS + +LRRP  QRRNQAE +QFHEKSEER+ L
Sbjct: 1  METKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERSLL 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0048079.13.11e-1861.73hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7U3P71.51e-1861.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LGJ22.09e-1376.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g08650.1Cp4.1LG11g08650.1mRNA