Cp4.1LG11g08370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g08370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box protein SKIP1-like
Location	Cp4.1LG11: 6813590 .. 6815609 (-)
RNA-Seq Expression	Cp4.1LG11g08370
Synteny	Cp4.1LG11g08370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTGTAACATGGCGGGCATCTCATCAAGGGGAGAGAGATAGAACTCTTTTATTGACCTCATAGCTTTCTGTATTCCTGAATTCCTAAGGTCACCCAAGAAATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCACCGAGCAGCGGTGGCGCGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCAACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCGGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTAATTAATTCACTTCTTCTTCTTTAAATTTTAGTTATAATTATTATGAAGCTTTTATTGTTCAATTAGGGTAAAAGATTTCCTTCATTGTTCGGTGTTTTTCCCTCTTCAGCAAGCACTTTGCTCGTGAATTTTATGATGAAGTCAATTAAAAACTATCACTAGATCTTTGCATCTGTTTTAACCAATCAATGTGCAGTTCTTTTAGAATAAAAATTGTTGGATAACACATTCAAGATAGGAACGAAGGATTTCTTGTTCTGGAAACATCCTTTTCTTTATTCTCTTTGGTTGGTCCTTTTCTTGTTAGTTGGATATGCAAAACTTTAGCATAACTGTGAATTTTTATATAAATGTTGCTATAATATCATGAGCATTCCTTATAAGAGCGTGGAAACCTCTCTCGTAGATATTGTCCTCTTTGAGCTTTTTCTCAAGGTTTTAAAACGCGTTTGCTAGAGAGAGAGGTTTCCACACCCTTATATGGAATGCTTAGTTCCTCTCTCCAACCAATGTGGTATCTCACATATTAAGATAGATCGTTGTTCCAATTATGTGGTTGAAATTTTTGAACCGGTCGATCGACTATGGATCATTCCGCAATTTCCAAGAGCTTGTTTGGATTGACCTTTGAAGGGTTTTAATAAATGTTAATCCAAAAGACTCTGGTCATGAGGTTTGGGTTTTGGATAAAATTGATGGCCTTCAACTTACTTACTTACATTTTAGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACTTTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAGTGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTGAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCGAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAATGCAGGGTTAATACTCTCCTAATTCAATGTGTATCAGTGTTGTTTTACTAAGTTGTACAGTTCTTAATTGAGCTGAAATCTGTACTCTCTTTTGAATTTGTATGGTGGATTGATGCGACACAAGGTTTGTATAACTTATAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGATTGTCGGAACCATTTTTCTCTATTCCTCTCAAACTCTTATCTCAACTTGTATACCTCTGAGAGTGGCTGGATA

mRNA sequence

CTTTTGTAACATGGCGGGCATCTCATCAAGGGGAGAGAGATAGAACTCTTTTATTGACCTCATAGCTTTCTGTATTCCTGAATTCCTAAGGTCACCCAAGAAATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCACCGAGCAGCGGTGGCGCGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCAACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCGGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACTTTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAGTGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTGAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCGAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAATGCAGGGTTAATACTCTCCTAATTCAATGTGTATCAGTGTTGTTTTACTAAGTTGTACAGTTCTTAATTGAGCTGAAATCTGTACTCTCTTTTGAATTTGTATGGTGGATTGATGCGACACAAGGTTTGTATAACTTATAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGATTGTCGGAACCATTTTTCTCTATTCCTCTCAAACTCTTATCTCAACTTGTATACCTCTGAGAGTGGCTGGATA

Coding sequence (CDS)

ATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCACCGAGCAGCGGTGGCGCGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCAACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCGGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACTTTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAGTGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTGAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCGAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGA

Protein sequence

MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI

Homology

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BLAST of Cp4.1LG11g08370 vs. ExPASy Swiss-Prot
Match: Q9FDX1 (F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-90
Identity = 171/296 (57.77%), Postives = 208/296 (70.27%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESPA 65
           W  L  E L NI SRLT ++ W GPM V K WL    D  L+S F+LEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 66  WWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVT 125
            WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+VL+I+S  NVT
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 126 DRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIV 185
           D SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  +    S+  G V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIGSV 187

Query: 186 PDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL ACPQD D+EA AI K M NLEHLE+ FS+LS K L  IC+GCP L+YLDLFGCV
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           +L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Cp4.1LG11g08370 vs. ExPASy Swiss-Prot
Match: Q9M096 (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.0e-74
Identity = 147/283 (51.94%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 4   PSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTES 63
           P W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + F+LE RF S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 64  PAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCAN 123
             WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEVL IK+C N
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 124 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 183
           VTD SM KIA+ C  L+E+DISY + I++ SL  +G+ C N+K LKRN    L PS    
Sbjct: 138 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 197

Query: 184 IVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFG 243
           + P  YL+  P+  + EA  I K+M  L+HLE+ +S L+A+ L  +CKGC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           C++LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

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BLAST of Cp4.1LG11g08370 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-23
Identity = 80/244 (32.79%), Postives = 116/244 (47.54%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESP 64
           +WAEL  +  ++I  RL   +  +    VCK W R   D S++   +++ R D       
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRA----- 239

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSL-QLVAQGCPNLEVLSIKSCAN 124
                 F+  ++SM R AV  S G L  I I +   + L   +A    NL+ L +  C  
Sbjct: 240 -----AFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFP 299

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD  +AK       L+ +++SYC   S  SL  IG+ CPN+KTLK N            
Sbjct: 300 ITDEGVAKAVSKVPLLEYLEVSYC-LFSGESLRDIGRSCPNLKTLKLN------------ 359

Query: 185 IVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFG 244
             P+   S      D  A AIA+ MP L HL+L  + L+ K L  I  GCP+L++LDL  
Sbjct: 360 RAPEIMFS--NSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQ 398

Query: 245 CVNL 248
           C N+
Sbjct: 420 CFNI 398

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BLAST of Cp4.1LG11g08370 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-22
Identity = 77/247 (31.17%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESP 64
           +WAEL  E  ++I  RL   +  +    VCK W R   D S++   ++  + +       
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVN---- 79

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSS-LQLVAQGCPNLEVLSIKSCAN 124
              S +    I+ +   AV  S G L  I I +  ++S L  +A    NL  L +  CA 
Sbjct: 80  ---SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAP 139

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           V  R + + A+    L+E+DI+Y   I    L ++G+ CPN++TLK N            
Sbjct: 140 VLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN------------ 199

Query: 185 IVPDSYLSACPQDV---DSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 244
                    C  DV   D  A+AIA+ MP L HL+L  + LS   L  I +GCP+LK L 
Sbjct: 200 ---------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLG 238

Query: 245 LFGCVNL 248
           L  C+N+
Sbjct: 260 LHQCLNI 238

[Close]

BLAST of Cp4.1LG11g08370 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.1e-18
Identity = 74/244 (30.33%), Postives = 110/244 (45.08%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESP 64
           +W EL  E  + I  RL   +       VC+ W R   D S++   ++    D       
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD------- 77

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSD-SSLQLVAQGCPNLEVLSIKSCAN 124
                  +  ++ M R AV  S G L  I I +      L  +A    NL  L +  C+ 
Sbjct: 78  ---LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQ 137

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD    + A+    L+E+++SYC   S  SL ++G+ C N+KTLK      L+   QK 
Sbjct: 138 ITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK------LNKHPQK- 197

Query: 185 IVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFG 244
                       + D +A+AIA+ MP L HL+LC + LS   L  I   C NL++LDL  
Sbjct: 198 ------------ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRR 230

Query: 245 CVNL 248
           C N+
Sbjct: 258 CFNV 230

[Close]

BLAST of Cp4.1LG11g08370 vs. NCBI nr
Match: XP_023545430.1 (F-box protein SKIP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 611 bits (1576), Expect = 7.02e-221
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Cp4.1LG11g08370 vs. NCBI nr
Match: KAG6599142.1 (F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030085.1 F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 605 bits (1559), Expect = 2.74e-218
Identity = 294/298 (98.66%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLT EQRWRGPMLVCKLWLRAATDSSLFSHF+LEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYL+ACPQDVDSEAVAIAKFMPNLEHL+LCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Cp4.1LG11g08370 vs. NCBI nr
Match: XP_022946543.1 (F-box protein SKIP1-like [Cucurbita moschata])

HSP 1 Score: 603 bits (1556), Expect = 7.86e-218
Identity = 293/298 (98.32%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLT EQRWRGPMLVCKLWLRAATDSSLFSHF+LEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYL+ACPQDVDSEAVAIAKFMPNLEHL+LCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298
           LFGCVNLTSRDIVNATS+LENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSNLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Cp4.1LG11g08370 vs. NCBI nr
Match: XP_022999743.1 (F-box protein SKIP1-like [Cucurbita maxima])

HSP 1 Score: 599 bits (1544), Expect = 5.31e-216
Identity = 291/298 (97.65%), Postives = 295/298 (98.99%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60
           MAE SWAELTQECLTNIFSRLT EQRWRGPMLVCKLWLRAATDSSLFSHF+L+PRFDSTP
Sbjct: 1   MAEASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFE KIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYL+ACPQDVDSEAVAIAKFMPNLEHLELCFSK+SAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Cp4.1LG11g08370 vs. NCBI nr
Match: XP_038890479.1 (F-box protein SKIP1 [Benincasa hispida])

HSP 1 Score: 556 bits (1432), Expect = 7.56e-199
Identity = 269/303 (88.78%), Postives = 283/303 (93.40%), Query Frame = 0


Query: 1   MAEP-----SWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPR 60
           MAEP     SWAELT ECLTNI SRLT EQRWRGPMLVCKLW RAATD SLFSHF+LEPR
Sbjct: 1   MAEPLSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+STPTESPAWWSP+FE KIDSMLRSAV WSLGSLSLIRIRHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESTPTESPAWWSPEFETKIDSMLRSAVHWSLGSLSLIRIRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180
           LSIKSCANVTDRSMAKIALGCQKL+EVDISYCHEISN+SL+LIGKHCPNIKT+KRNFFN 
Sbjct: 121 LSIKSCANVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTIKRNFFNN 180

Query: 181 LDPSQQKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YL++CPQDVDSEA AIAKFMPNLEHLEL FSKLSAKAL+LIC+GCP 
Sbjct: 181 LDPSQHKGIVPDNYLNSCPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICEGCPK 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 298
           LK+LDLFGCVNLTSRDI NATSS+ENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI
Sbjct: 241 LKFLDLFGCVNLTSRDIANATSSMENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 300

[Close]

BLAST of Cp4.1LG11g08370 vs. ExPASy TrEMBL
Match: A0A6J1G461 (F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111450576 PE=4 SV=1)

HSP 1 Score: 603 bits (1556), Expect = 3.81e-218
Identity = 293/298 (98.32%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLT EQRWRGPMLVCKLWLRAATDSSLFSHF+LEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYL+ACPQDVDSEAVAIAKFMPNLEHL+LCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298
           LFGCVNLTSRDIVNATS+LENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSNLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Cp4.1LG11g08370 vs. ExPASy TrEMBL
Match: A0A6J1KKL1 (F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111494002 PE=4 SV=1)

HSP 1 Score: 599 bits (1544), Expect = 2.57e-216
Identity = 291/298 (97.65%), Postives = 295/298 (98.99%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60
           MAE SWAELTQECLTNIFSRLT EQRWRGPMLVCKLWLRAATDSSLFSHF+L+PRFDSTP
Sbjct: 1   MAEASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120
           TESPAWWSPQFE KIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS
Sbjct: 61  TESPAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKS 120

Query: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180
           CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ
Sbjct: 121 CANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYL+ACPQDVDSEAVAIAKFMPNLEHLELCFSK+SAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Cp4.1LG11g08370 vs. ExPASy TrEMBL
Match: A0A5D3BD72 (F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00320 PE=4 SV=1)

HSP 1 Score: 540 bits (1390), Expect = 9.20e-193
Identity = 262/303 (86.47%), Postives = 275/303 (90.76%), Query Frame = 0


Query: 1   MAEPS-----WAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPR 60
           MAEPS     WAELT ECLTNI SRLT EQRWRGPMLVCK W RAA D SLFSHF+LEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+S PTESPAWW P+FE KIDSMLRSAV+WSLGSLS+IR+RHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180
           LSIKSCANVTD SMAKIA GCQKL+EVDISYCHEISN+SL+LIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQQKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YL ACPQDVDSEA AIAKFM NLEHLEL FSKLSAKALT IC+GCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 298
           LKYLDLFGCVNLTSRDI NATSSLENLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

[Close]

BLAST of Cp4.1LG11g08370 vs. ExPASy TrEMBL
Match: A0A1S3BUE6 (F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1)

HSP 1 Score: 540 bits (1390), Expect = 9.20e-193
Identity = 262/303 (86.47%), Postives = 275/303 (90.76%), Query Frame = 0


Query: 1   MAEPS-----WAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPR 60
           MAEPS     WAELT ECLTNI SRLT EQRWRGPMLVCK W RAA D SLFSHF+LEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+S PTESPAWW P+FE KIDSMLRSAV+WSLGSLS+IR+RHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 LSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNT 180
           LSIKSCANVTD SMAKIA GCQKL+EVDISYCHEISN+SL+LIG+HCPNIKTLKRN+FN 
Sbjct: 121 LSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRNYFNN 180

Query: 181 LDPSQQKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YL ACPQDVDSEA AIAKFM NLEHLEL FSKLSAKALT IC+GCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 298
           LKYLDLFGCVNLTSRDI NATSSLENLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

[Close]

BLAST of Cp4.1LG11g08370 vs. ExPASy TrEMBL
Match: A0A0A0LM72 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G036050 PE=4 SV=1)

HSP 1 Score: 538 bits (1385), Expect = 4.59e-192
Identity = 264/299 (88.29%), Postives = 277/299 (92.64%), Query Frame = 0


Query: 1   MAEPS-WAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDST 60
           MAEPS WAELT ECLTNI SRLT EQRWRGPMLVCK W RAATD SLFSHF+LE RF+S 
Sbjct: 1   MAEPSPWAELTHECLTNILSRLTMEQRWRGPMLVCKHWFRAATDPSLFSHFDLEKRFESA 60

Query: 61  PTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIK 120
           PTE PAWW P+FE KIDSMLRSAV+WSLGSLS+IRIRHCSDSSL LVAQGCPNLEVLSIK
Sbjct: 61  PTELPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRIRHCSDSSLDLVAQGCPNLEVLSIK 120

Query: 121 SCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPS 180
           SCANVTDRSMAKIA GCQKL+EVDISYCHEISNVSL+LIG+HCPNIKTLKRNFFN LDPS
Sbjct: 121 SCANVTDRSMAKIAFGCQKLREVDISYCHEISNVSLALIGRHCPNIKTLKRNFFNNLDPS 180

Query: 181 QQKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYL 240
           Q KGIVPD+YL A PQDVDSEA AIAKFM NLE+LEL FSKLSAKALTLIC+GCPNLKYL
Sbjct: 181 QHKGIVPDNYLDARPQDVDSEAAAIAKFMHNLEYLELGFSKLSAKALTLICEGCPNLKYL 240

Query: 241 DLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298
           DLFGCVNLTSRDI+NATSSLE+LEIRKPNFYIPRSVFHTERY HWRLYDERFQTDIFRI
Sbjct: 241 DLFGCVNLTSRDIMNATSSLEHLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDIFRI 299

[Close]

BLAST of Cp4.1LG11g08370 vs. TAIR 10
Match: AT5G57900.1 (SKP1 interacting partner 1 )

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-91
Identity = 171/296 (57.77%), Postives = 208/296 (70.27%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESPA 65
           W  L  E L NI SRLT ++ W GPM V K WL    D  L+S F+LEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 66  WWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVT 125
            WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+VL+I+S  NVT
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 126 DRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIV 185
           D SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  +    S+  G V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIGSV 187

Query: 186 PDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL ACPQD D+EA AI K M NLEHLE+ FS+LS K L  IC+GCP L+YLDLFGCV
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           +L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Cp4.1LG11g08370 vs. TAIR 10
Match: AT4G30640.1 (RNI-like superfamily protein )

HSP 1 Score: 279.6 bits (714), Expect = 2.8e-75
Identity = 147/283 (51.94%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 4   PSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTES 63
           P W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + F+LE RF S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 64  PAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCAN 123
             WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEVL IK+C N
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 124 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 183
           VTD SM KIA+ C  L+E+DISY + I++ SL  +G+ C N+K LKRN    L PS    
Sbjct: 138 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 197

Query: 184 IVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFG 243
           + P  YL+  P+  + EA  I K+M  L+HLE+ +S L+A+ L  +CKGC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           C++LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of Cp4.1LG11g08370 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-23
Identity = 77/247 (31.17%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESP 64
           +WAEL  E  ++I  RL   +  +    VCK W R   D S++   ++  + +       
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVN---- 79

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSS-LQLVAQGCPNLEVLSIKSCAN 124
              S +    I+ +   AV  S G L  I I +  ++S L  +A    NL  L +  CA 
Sbjct: 80  ---SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAP 139

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           V  R + + A+    L+E+DI+Y   I    L ++G+ CPN++TLK N            
Sbjct: 140 VLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN------------ 199

Query: 185 IVPDSYLSACPQDV---DSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 244
                    C  DV   D  A+AIA+ MP L HL+L  + LS   L  I +GCP+LK L 
Sbjct: 200 ---------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLG 238

Query: 245 LFGCVNL 248
           L  C+N+
Sbjct: 260 LHQCLNI 238

[Close]

BLAST of Cp4.1LG11g08370 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 6.5e-19
Identity = 74/244 (30.33%), Postives = 110/244 (45.08%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTPTESP 64
           +W EL  E  + I  RL   +       VC+ W R   D S++   ++    D       
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD------- 77

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSD-SSLQLVAQGCPNLEVLSIKSCAN 124
                  +  ++ M R AV  S G L  I I +      L  +A    NL  L +  C+ 
Sbjct: 78  ---LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQ 137

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD    + A+    L+E+++SYC   S  SL ++G+ C N+KTLK      L+   QK 
Sbjct: 138 ITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK------LNKHPQK- 197

Query: 185 IVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLDLFG 244
                       + D +A+AIA+ MP L HL+LC + LS   L  I   C NL++LDL  
Sbjct: 198 ------------ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRR 230

Query: 245 CVNL 248
           C N+
Sbjct: 258 CFNV 230

[Close]

BLAST of Cp4.1LG11g08370 vs. TAIR 10
Match: AT4G15475.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 8.4e-19
Identity = 55/183 (30.05%), Postives = 92/183 (50.27%), Query Frame = 0


Query: 87  LGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVTDRSMAKIALGCQKLQEVDISY 146
           L  L+L+  +   +S+LQ + +GC +LE+L +  C+ + D +M  IA GC+ L+++ I  
Sbjct: 374 LKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRR 433

Query: 147 CHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGI-----VPDSYLSACPQDVDSEA 206
           C+EI N  +  IGKHC ++  L   F + +       I     +    +S C Q  D+  
Sbjct: 434 CYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCSLQQLNVSGCNQISDAGI 493

Query: 207 VAIAKFMPNLEHLEL-CFSKLSAKALTLICKGCPNLKYLDLFGCVNLTSRDIVNATSSLE 264
            AIA+  P L HL++     +    L  + +GCP LK L L  C ++T   + +     +
Sbjct: 494 TAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCK 553

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g08370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDX1	1.8e-90	57.77	F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1	[more]
Q9M096	4.0e-74	51.94	Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE...	[more]
Q9S9V9	2.5e-23	32.79	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9S9V8	4.7e-22	31.17	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
Q9M0U9	9.1e-18	30.33	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]

BLAST of Cp4.1LG11g08370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545430.1	7.02e-221	100.00	F-box protein SKIP1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6599142.1	2.74e-218	98.66	F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030085...	[more]
XP_022946543.1	7.86e-218	98.32	F-box protein SKIP1-like [Cucurbita moschata]	[more]
XP_022999743.1	5.31e-216	97.65	F-box protein SKIP1-like [Cucurbita maxima]	[more]
XP_038890479.1	7.56e-199	88.78	F-box protein SKIP1 [Benincasa hispida]	[more]

BLAST of Cp4.1LG11g08370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G461	3.81e-218	98.32	F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111450576 PE=4 SV=1	[more]
A0A6J1KKL1	2.57e-216	97.65	F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111494002 PE=4 SV=1	[more]
A0A5D3BD72	9.20e-193	86.47	F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G...	[more]
A0A1S3BUE6	9.20e-193	86.47	F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1	[more]
A0A0A0LM72	4.59e-192	88.29	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G036050 PE=4 ...	[more]

BLAST of Cp4.1LG11g08370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57900.1	1.3e-91	57.77	SKP1 interacting partner 1	[more]
AT4G30640.1	2.8e-75	51.94	RNI-like superfamily protein	[more]
AT4G05497.1	3.3e-23	31.17	RNI-like superfamily protein	[more]
AT4G05460.1	6.5e-19	30.33	RNI-like superfamily protein	[more]
AT4G15475.1	8.4e-19	30.05	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 208..232 e-value: 140.0 score: 5.5 coord: 136..161 e-value: 0.014 score: 24.6 coord: 233..258 e-value: 0.017 score: 24.3 coord: 110..135 e-value: 2.1E-4 score: 30.6 coord: 87..109 e-value: 140.0 score: 5.5
None	No IPR available	GENE3D	1.20.1280.50		coord: 5..46 e-value: 7.4E-8 score: 34.1
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 6..298
None	No IPR available	PANTHER	PTHR16134:SF29	F-BOX PROTEIN SKIP1	coord: 6..298
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 82..262
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 136..158 e-value: 0.36 score: 11.0
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 75..269 e-value: 3.0E-33 score: 116.8
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 3..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g08370.1	Cp4.1LG11g08370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding