Cp4.1LG11g08310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g08310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	autophagy-related protein 18b isoform X1
Location	Cp4.1LG11: 6701413 .. 6708280 (-)
RNA-Seq Expression	Cp4.1LG11g08310
Synteny	Cp4.1LG11g08310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAAGCTCTTGAGTTCACCTTCCGTGTTTGATCTAAAACTTTCACGTTCTTTCTTGCTAGCTCTTGGTGCATTCAATATTGTTGAGATGCTGTTTAGCTCTAATCTTGTTGCCATTGTTGGAGCTGGTGAACAGGTGATTTGGAAGTTGATTATAGCTACAATTCAATAATTATCTATTGTAACATGCGGTATCTCACATTTTATGCATCTGGTTGCTAATTAAAGTATATTTTTCCTTGATTGTCCACAGCCATCTTTATCCCCACGTCGTCTTTGCTTGTTTAATACAATGAGTGGAAATGCCCTTAGAGAACTGAATTTCTTAACTTCAATACTAGCTGTTCGCATGAATAGGAAAAGGTAAAGGAAAAAAAATCTAGCTATTAAGATGCATTATTTTTAAAAATGGTAATGATGTATGATGTGTGATTTTTTATTTATTTATTTTTACAAGAAGCTACATTTCCATTAGTATATGGTAAACACAATTTTTTATTATATTTTATATCATATAAATTTGCTTTTGTTATGGAACTTCTGATGTTAAGTTGGTAACTTGAACAAATTGGTATCAGAGGCAGCTTGTATGCTAATTTGTAGTTGACATAATTTTATAAATGAACTTGAGAAATGAAGCTAGGCTAGATGACGTGAATACTAATAAATAATTGATCCATACATCTTAGATATTTTTGACATTTTCTATATATTGACCATTGACTATTTTACCTACCTTTCAAATCTAGTAACTATGTATCAAGCCCGTTTAATCCAAGAAACCATCTTTCTATTATTTAATTTAAGGGTATAAGATGTTTTCGACATTTTGGTTATCATCTTTCTCCTACAATTAGCTTTTGAGCAATATCCTGTAATTTCCTTTTTGGTGGCTTCAATTCTTGGGTTTAGTTCGTGTTTTCCTTCTTTTTGGTTGTACATGCGTTCTTCTTGATGGAAGTGGCTAAAATATACAAACAACCTTCAACTTGGCTAAATGAGGTTTTTATGTGATCTGGCATACTTTTAGACTCTTTCTTCTAATTGGAAATCGAATTTTAGTGGCCTATTATTGAAAGAAAAAAAGAGTACCTATCTTTTAAGCAAAACTAAAACCATCAAACATACTTGATTTACTAGAAGGAAGTTCGTTTTTGGAAATGGTGGCTGCATTAGACCCTTCCTTTTTCAGAGAGGAGGAATTCATTCGTCTAGACCATTAACAGACTGAACTTTACAAGCATCGGTAACTTTTATTTTCAAGTAAGGTTGAGAATAATTGTGTCAGTTTTTGAAATAATAATCTGGTATCTATGGTGTGAAAAGAATGCAAGAATTTTCAGGGACGTTTTGTCATCTTTTGATAGCTTTTTGGATTTTGTTTTCTTTTATGCATTGTGCTGGTGTAAGCGTAAACACCTTTTTTGAGATTATTCTTTCATCTTTGATTTCAATTATCAAGATTTTTTGCAACTCATCCATAGGTGTCGGGAATCTTTTATGCTTCCTTCATTTCATTTATCAATCGAATTTGTTTCTCCTCCCAAAAAAAGTTATTTTCATAAATATAATAGGAACTTATATTTTATTTATTTATTTATTATTATTATTTTTTGTATTTCTACCGGTCTTTTAAGCTGTACTGACTCTATGATTGGATGGAAAATGCAGACTTATTGTACTACTGCAAGATAAGACATACATATACGACATAAATAGTCTCACAATCTTGGACACGATTGATACGGTACCAAATTTGAAAGGTCAGGTTGGTATATATTCCTTTTTGTACTTGCTATGTCTTGCATAATATGTTCATGCTAGAGAGTTTTGGCAAAGTTTCTTGCATTTCTTTACATTGCTGTTCTATTCAAGAACTGTCATTTGCTCATTCCAGTGCTTGAACTTGGTAAAGAACTTTTAACTGTCATTTTTATATTTTTATGGTTCATTACTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

TATGAAGCTCTTGAGTTCACCTTCCGTGTTTGATCTAAAACTTTCACGTTCTTTCTTGCTAGCTCTTGGTGCATTCAATATTGTTGAGATGCTGTTTAGCTCTAATCTTGTTGCCATTGTTGGAGCTGGTGAACAGCCATCTTTATCCCCACGTCGTCTTTGCTTGTTTAATACAATGAGTGGAAATGCCCTTAGAGAACTGAATTTCTTAACTTCAATACTAGCTGTTCGCATGAATAGGAAAAGACTTATTGTACTACTGCAAGATAAGACATACATATACGACATAAATAGTCTCACAATCTTGGACACGATTGATACGGTACCAAATTTGAAAGGTCAGGTTGGTATATATTCCTTTTTGGCCACACTAGCAATCATAACCTACAATGGTTACTTCCAGGAGTACAACTTAAGTCTCAGTAACCAGAACGAGTTCTCGAGAAGTTTGGACTGTGAATTCAATCTCTTGACTGCGATCGCCAATAACGACGTAGGGTGGGCAAAAGGACTTGATCAAGCCATGTTTGCGCATTTAGAAATTCAAGTTGAGCTATGTCATAATGTC

Coding sequence (CDS)

ATGAAGCTCTTGAGTTCACCTTCCGTGTTTGATCTAAAACTTTCACGTTCTTTCTTGCTAGCTCTTGGTGCATTCAATATTGTTGAGATGCTGTTTAGCTCTAATCTTGTTGCCATTGTTGGAGCTGGTGAACAGCCATCTTTATCCCCACGTCGTCTTTGCTTGTTTAATACAATGAGTGGAAATGCCCTTAGAGAACTGAATTTCTTAACTTCAATACTAGCTGTTCGCATGAATAGGAAAAGACTTATTGTACTACTGCAAGATAAGACATACATATACGACATAAATAGTCTCACAATCTTGGACACGATTGATACGGTACCAAATTTGAAAGGTCAGGTTGGTATATATTCCTTTTTGGCCACACTAGCAATCATAACCTACAATGGTTACTTCCAGGAGTACAACTTAAGTCTCAGTAACCAGAACGAGTTCTCGAGAAGTTTGGACTGTGAATTCAATCTCTTGACTGCGATCGCCAATAACGACGTAGGGTGGGCAAAAGGACTTGATCAAGCCATGTTTGCGCATTTAGAAATTCAAGTTGAGCTATGTCATAATGTC

Protein sequence

MKLLSSPSVFDLKLSRSFLLALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLATLAIITYNGYFQEYNLSLSNQNEFSRSLDCEFNLLTAIANNDVGWAKGLDQAMFAHLEIQVELCHNV

Homology

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy Swiss-Prot
Match: Q8H1Q8 (Autophagy-related protein 18b OS=Arabidopsis thaliana OX=3702 GN=ATG18B PE=2 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 5.9e-31
Identity = 90/185 (48.65%), Postives = 118/185 (63.78%), Query Frame = 0


Query: 9   VFDLKLSR-SFLLALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALREL 68
           +FD    R  +  A GAF IVEML+SS+L+AIVGAGEQ SLSPRRLCLF T +G  LREL
Sbjct: 33  IFDSTTGRLCYERAAGAFVIVEMLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLREL 92

Query: 69  NFLTSILAVRMNRKRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYS------FL 128
           NFLTSILAVRMN+KRL+V+L +KT++YD+N+L +LDTIDTVPN KG +  +S      +L
Sbjct: 93  NFLTSILAVRMNKKRLVVVLLEKTFVYDLNTLVMLDTIDTVPNPKG-LSAFSPSLEGCYL 152

Query: 129 ATLAIITYNGYFQEYNLSLSNQNEFSRSLDCEFNLLTAIA--NNDVGWAKGLDQAMFAHL 185
           A  A  T         + L + +E    +D   + L AIA  +N +  A G +Q     +
Sbjct: 153 AVPASTTKGSVLVYNVMDLQSHSE----IDAHRSPLAAIALSSNGMYIATGSEQGTLIRV 212

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy Swiss-Prot
Match: A7A258 (Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=ATG18 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 52/105 (49.52%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 23  GAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKR 82
           G + IVEMLFS++L+A+VG G+QP+LSPRRL + NT   + + E+ F TSIL+V+MN+ R
Sbjct: 45  GGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSR 104

Query: 83  LIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLATLAII 128
           L+VLLQ++ YIYDIN++ +L TI+T PN +G + +   +A   ++
Sbjct: 105 LVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMSPSVANSYLV 149

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy Swiss-Prot
Match: P43601 (Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ATG18 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 52/105 (49.52%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 23  GAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKR 82
           G + IVEMLFS++L+A+VG G+QP+LSPRRL + NT   + + E+ F TSIL+V+MN+ R
Sbjct: 45  GGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSR 104

Query: 83  LIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLATLAII 128
           L+VLLQ++ YIYDIN++ +L TI+T PN +G + +   +A   ++
Sbjct: 105 LVVLLQEQIYIYDINTMRLLHTIETNPNPRGLMAMSPSVANSYLV 149

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy Swiss-Prot
Match: Q8X1F5 (Autophagy-related protein 18 OS=Komagataella pastoris OX=4922 GN=ATG18 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-21
Identity = 59/116 (50.86%), Postives = 82/116 (70.69%), Query Frame = 0


Query: 5   SSPSVFDLK-LSRSFLLALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNA 64
           S   +F+++  ++   LA  +  IVEMLFSS+LVAIVG GE P  SPR+L +FNT   + 
Sbjct: 40  SGYKIFNVEPFTKCLSLADTSIGIVEMLFSSSLVAIVGLGELPDSSPRKLKVFNTKRRSI 99

Query: 65  LRELNFLTSILAVRMNRKRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYS 120
           + EL F TSILAV+MNR+R++VLL+D  YIYDIN++ IL TI+T  N +G + + S
Sbjct: 100 ICELTFPTSILAVKMNRERMVVLLEDTIYIYDINTMRILHTIETPSNPEGLIALSS 155

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy Swiss-Prot
Match: Q75F47 (Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ATG18 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-20
Identity = 51/95 (53.68%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 23  GAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKR 82
           G   IVEMLFS++L+A+VG G+ PS+SPRRL + NT   + + E+ F T+ILAV+MNR R
Sbjct: 46  GGCGIVEMLFSTSLLAVVGIGDNPSMSPRRLRILNTKRHSVICEVTFPTTILAVKMNRSR 105

Query: 83  LIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGI 118
           L+VLLQ++ YIYDINS+ +L TI+T  N +G + +
Sbjct: 106 LVVLLQEQIYIYDINSMRLLYTIETSSNPRGLISM 140

[Close]

BLAST of Cp4.1LG11g08310 vs. NCBI nr
Match: XP_023547342.1 (autophagy-related protein 18b-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (489), Expect = 1.27e-59
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 32  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 91

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLATLAI 126
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFL  L +
Sbjct: 92  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLYLLCL 137

[Close]

BLAST of Cp4.1LG11g08310 vs. NCBI nr
Match: XP_023547340.1 (autophagy-related protein 18b-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (489), Expect = 1.94e-59
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 45  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 104

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLATLAI 126
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFL  L +
Sbjct: 105 KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLYLLCL 150

[Close]

BLAST of Cp4.1LG11g08310 vs. NCBI nr
Match: XP_022999717.1 (autophagy-related protein 18b isoform X2 [Cucurbita maxima])

HSP 1 Score: 189 bits (481), Expect = 1.86e-55
Identity = 140/321 (43.61%), Postives = 141/321 (43.93%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 45  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 104

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 105 KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 164

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 165 NVMELQLHCEIDAHLAPLATMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 224

[Close]

BLAST of Cp4.1LG11g08310 vs. NCBI nr
Match: XP_022946795.1 (autophagy-related protein 18b isoform X1 [Cucurbita moschata])

HSP 1 Score: 189 bits (481), Expect = 1.86e-55
Identity = 140/321 (43.61%), Postives = 141/321 (43.93%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 45  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 104

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 105 KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 164

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 165 NVMELQLHCEIDAHLAPLSTMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 224

[Close]

BLAST of Cp4.1LG11g08310 vs. NCBI nr
Match: XP_022999718.1 (autophagy-related protein 18b isoform X3 [Cucurbita maxima])

HSP 1 Score: 189 bits (480), Expect = 1.93e-55
Identity = 140/322 (43.48%), Postives = 141/322 (43.79%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 32  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 91

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 92  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 151

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 152 NVMELQLHCEIDAHLAPLATMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 211

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy TrEMBL
Match: A0A6J1KBK9 (autophagy-related protein 18b isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493984 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 9.01e-56
Identity = 140/321 (43.61%), Postives = 141/321 (43.93%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 45  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 104

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 105 KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 164

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 165 NVMELQLHCEIDAHLAPLATMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 224

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy TrEMBL
Match: A0A6J1G519 (autophagy-related protein 18b isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450756 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 9.01e-56
Identity = 140/321 (43.61%), Postives = 141/321 (43.93%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 45  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 104

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 105 KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 164

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 165 NVMELQLHCEIDAHLAPLSTMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 224

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy TrEMBL
Match: A0A6J1KKJ0 (autophagy-related protein 18b isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493984 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 9.33e-56
Identity = 140/322 (43.48%), Postives = 141/322 (43.79%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 32  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 91

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 92  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 151

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 152 NVMELQLHCEIDAHLAPLATMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 211

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy TrEMBL
Match: A0A6J1G4L9 (autophagy-related protein 18b isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450756 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 9.33e-56
Identity = 140/322 (43.48%), Postives = 141/322 (43.79%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 32  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 91

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 92  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 151

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 152 NVMELQLHCEIDAHLAPLSTMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 211

[Close]

BLAST of Cp4.1LG11g08310 vs. ExPASy TrEMBL
Match: A0A6J1KDW4 (autophagy-related protein 18b isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493984 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 1.30e-55
Identity = 140/322 (43.48%), Postives = 141/322 (43.79%), Query Frame = 0


Query: 21  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 80
           ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR
Sbjct: 45  ALGAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNR 104

Query: 81  KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG--------------------------- 140
           KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKG                           
Sbjct: 105 KRLIVLLQDKTYIYDINSLTILDTIDTVPNLKGICAFSPSLDGCFLALPASITKGSLLLY 164

Query: 141 ------------------------------------------------------------ 165
                                                                       
Sbjct: 165 NVMELQLHCEIDAHLAPLATMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYP 224

[Close]

BLAST of Cp4.1LG11g08310 vs. TAIR 10
Match: AT4G30510.1 (homolog of yeast autophagy 18 (ATG18) B )

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-29
Identity = 80/163 (49.08%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 30  MLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKRLIVLLQD 89
           ML+SS+L+AIVGAGEQ SLSPRRLCLF T +G  LRELNFLTSILAVRMN+KRL+V+L +
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 90  KTYIYDINSLTILDTIDTVPNLKGQVGIYS------FLATLAIITYNGYFQEYNLSLSNQ 149
           KT++YD+N+L +LDTIDTVPN KG +  +S      +LA  A  T         + L + 
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKG-LSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSH 120

Query: 150 NEFSRSLDCEFNLLTAIA--NNDVGWAKGLDQAMFAHLEIQVE 185
           +E    +D   + L AIA  +N +  A G +Q     + +  E
Sbjct: 121 SE----IDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSE 158

HSP 2 Score: 53.5 bits (127), Expect = 2.1e-07
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 96  INSLTILDTIDTVPNLKGQVGIYSFLATLAIITYNGYFQEYNLSLSNQNEFSRSLDCEFN 155
           I S  ++  ID +          S  AT+++ITYNGYFQEY LS++N+NE   +L+ EFN
Sbjct: 246 IRSYAVVRKIDKLEGTSSPSHFTSLRATVSVITYNGYFQEYTLSINNKNESLWTLEREFN 305

Query: 156 LLT 159
           L +
Sbjct: 306 LFS 308

[Close]

BLAST of Cp4.1LG11g08310 vs. TAIR 10
Match: AT4G30510.2 (homolog of yeast autophagy 18 (ATG18) B )

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-29
Identity = 80/163 (49.08%), Postives = 106/163 (65.03%), Query Frame = 0


Query: 30  MLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKRLIVLLQD 89
           ML+SS+L+AIVGAGEQ SLSPRRLCLF T +G  LRELNFLTSILAVRMN+KRL+V+L +
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 90  KTYIYDINSLTILDTIDTVPNLKGQVGIYS------FLATLAIITYNGYFQEYNLSLSNQ 149
           KT++YD+N+L +LDTIDTVPN KG +  +S      +LA  A  T         + L + 
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKG-LSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSH 120

Query: 150 NEFSRSLDCEFNLLTAIA--NNDVGWAKGLDQAMFAHLEIQVE 185
           +E    +D   + L AIA  +N +  A G +Q     + +  E
Sbjct: 121 SE----IDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSE 158

[Close]

BLAST of Cp4.1LG11g08310 vs. TAIR 10
Match: AT3G62770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-13
Identity = 32/105 (30.48%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 23  GAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKR 82
           G   +VEMLF  N++A+VG G  P   P ++ +++   G  + EL+F + + +VR+ R R
Sbjct: 118 GGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDR 177

Query: 83  LIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLATLAII 128
           +IV+L+ K ++Y+ + L ++  I+T+ N KG   +   + ++ ++
Sbjct: 178 IIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLV 222

[Close]

BLAST of Cp4.1LG11g08310 vs. TAIR 10
Match: AT3G62770.3 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-13
Identity = 32/105 (30.48%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 23  GAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKR 82
           G   +VEMLF  N++A+VG G  P   P ++ +++   G  + EL+F + + +VR+ R R
Sbjct: 118 GGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDR 177

Query: 83  LIVLLQDKTYIYDINSLTILDTIDTVPNLKGQVGIYSFLATLAII 128
           +IV+L+ K ++Y+ + L ++  I+T+ N KG   +   + ++ ++
Sbjct: 178 IIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLV 222

[Close]

BLAST of Cp4.1LG11g08310 vs. TAIR 10
Match: AT3G56440.1 (homolog of yeast autophagy 18 (ATG18) D )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 32/91 (35.16%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 23  GAFNIVEMLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKR 82
           G F IVEMLF SN++A+VG G        ++ +++   G  + E  F + I AV++ R R
Sbjct: 75  GGFKIVEMLFRSNILALVGGGPNSQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDR 134

Query: 83  LIVLLQDKTYIYDINSLTILDTIDTVPNLKG 114
           ++V+L+ K Y+Y+   L +L  I+ + N +G
Sbjct: 135 IVVVLEHKIYVYNFMDLRLLHQIENMANPRG 165

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g08310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1Q8	5.9e-31	48.65	Autophagy-related protein 18b OS=Arabidopsis thaliana OX=3702 GN=ATG18B PE=2 SV=...	[more]
A7A258	1.9e-21	49.52	Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) OX=3077...	[more]
P43601	1.9e-21	49.52	Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]
Q8X1F5	4.3e-21	50.86	Autophagy-related protein 18 OS=Komagataella pastoris OX=4922 GN=ATG18 PE=3 SV=1	[more]
Q75F47	1.2e-20	53.68	Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 ...	[more]

BLAST of Cp4.1LG11g08310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547342.1	1.27e-59	96.23	autophagy-related protein 18b-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023547340.1	1.94e-59	96.23	autophagy-related protein 18b-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022999717.1	1.86e-55	43.61	autophagy-related protein 18b isoform X2 [Cucurbita maxima]	[more]
XP_022946795.1	1.86e-55	43.61	autophagy-related protein 18b isoform X1 [Cucurbita moschata]	[more]
XP_022999718.1	1.93e-55	43.48	autophagy-related protein 18b isoform X3 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG11g08310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBK9	9.01e-56	43.61	autophagy-related protein 18b isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1G519	9.01e-56	43.61	autophagy-related protein 18b isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KKJ0	9.33e-56	43.48	autophagy-related protein 18b isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1G4L9	9.33e-56	43.48	autophagy-related protein 18b isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KDW4	1.30e-55	43.48	autophagy-related protein 18b isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of Cp4.1LG11g08310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30510.1	3.3e-29	49.08	homolog of yeast autophagy 18 (ATG18) B	[more]
AT4G30510.2	3.3e-29	49.08	homolog of yeast autophagy 18 (ATG18) B	[more]
AT3G62770.1	2.0e-13	30.48	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G62770.3	2.0e-13	30.48	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G56440.1	1.4e-11	35.16	homolog of yeast autophagy 18 (ATG18) D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11227:SF17	AUTOPHAGY-RELATED 18A, ISOFORM E	coord: 12..114
None	No IPR available	PANTHER	PTHR11227	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED	coord: 12..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g08310.1	Cp4.1LG11g08310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane