Cp4.1LG11g07500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g07500
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionpaired amphipathic helix protein Sin3-like 3
LocationCp4.1LG11: 5683162 .. 5686972 (+)
RNA-Seq ExpressionCp4.1LG11g07500
SyntenyCp4.1LG11g07500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTGCTCAACTCTTGCTCATTCGACAAAGCTTCCGCAGATTTTCTTCAGGTAATCGTTTATCTTTTTCTTCCATAATCGTGTCTTTGTTGCCTTGCTATGAACAAATGTTAATTGTTTTCGTTCCTTCGATCTTCTTGTTCTTTTAGGATTTTATTGTCGTGTGTTGCTATCAAGAAATGTGAATTTGTTTTGTTCCTTCAATCTTTTTGTTCTTTTAGGATTTTATTATCGTTGCGTTGCTATCAAGAAATGTGAACTGGTTTGTTCTTTTAGGATTTTATTATCGTTGCTTTCAATCGAGAAGTATATTGGTTATGGTTGAGGATTAAATGAAAACTAATGATCAGGATAGAGGTTTGCCAAATCAATAGAATAGGACGTGCTTGTGTCTGTATCTTGATACTGGTTCAGTAGTGAGTTCTATAGATCACCGTAGTTAACAGGTGCTTTGTCAGAAATGAAGAACCGCGGGGAGGCAGATGGAAGTATCCGGAAATTAACAGCGGAGGATGCCTTAGAATTTCTCAAGAATGTGAAGGACGTCATTGGAAACGAGACGGAAAAATATGAAGAATTTCTTCAACTCATGAAGGATTTAGCGTTTCAAAGGTTTGGTTGCAATATAAAATATCTAGTTTATAGGTTTCTCCATTTGAGTTTTGAAGTGATCTGTGTTGTTATCGATTTGCAGAATTGACATTGTGGGCGTCATAACAGGGGTAAAGCGTCTATTCAGAGGTCATAATGACCTGATTTTGGGCTTTAATACTTTTTTGCCACAAAGATATGCAATAGCTTGTCCTCTTGAGGATGAAACGCCTCCTCGAAGGAGGCGGCCTCTTAAACTTGGAGACGCTTTGGACTATGTCAGTGAGGTTAAGGTAAATTTTGTCTCAAAACTTGAAAACTTTCATTTTAACCATTGAAGTTTGGAATTTGAAGTTTTTTCTCGTTAAATTCATGATGGAAAAGTTTGTATCTGCTTATATATTGTTGAAATGAACAATCTAAACACATGCGGGATGAAAATTTTGGTTTAGGTTTAGTGAAGAAGTTACAAACAGAAGAAAGAAAATTTGGGGCTTGAGGTTGAAGGATGAGGACGACCAGATGAACAATGTGTTTCTATTGTTCACTTATGCAAATTAAACCTTTTTTGTCTATGAATTTAATAGCGAAAGGTTGTTTTGAAACAAACTTCAAACTTCAAACGTTAAAATGAAGCATTTACGAGTTTCAGTATAAATGAAACCAACTTCGTAGTTTAGGAGTACTTTCAATCACTTTTTGACGTAGTTTGATGTCATTATTTTGCTTTCCTGCATTGTATACATTTTTGTTTTTGTAAATGCAGAGACGGTTTGAAGGTGAGTTCCATATATTCAATTCATTTATGAGAAATTTGCATTTGTACAAAAGAGGAAAAAAGCCTCTAAGTGAGCTCCACCGGGAGGTTTGTTTTCACTTTTCAAGTTCAAGTAAGAAACAAAATTGCTGTTTTTGTTGCTTCATTTAAGATTAATAGTTTTGGGTTTGCAGGTTTGTGTACTGATGCAAGACCACCCAGACCTTGTTGAGGGTTTTGCTGATTTTCTTCCTTGTCCTTCACTCACAACAACCTCAAACAATGATCCTGAGCAGAACATTGGTGTTGACCGTCCTGATGAAGAAGGTGATGAGCTTTCTGAAGTGGGTTTCATAATGTCCTAATCATAATGCAATGAAAAGTTAATATTGTTTTCATTACACATCCTTTCTGCTTGGTGGTTCGGTTTGGTTATTCAAGTTTTTCGTCTCTGTTTAAACAAGATCTTGGCATTGATCAATATCTTTGTTCTTGTTGTTGTTTAACAAGCCATTTTTGAGTATTCTTTTTGTTGCATCTGTATTCTTGGTGTCGGTGTTTCTTGTTCTCGCAAGTGTTCTAGCTTTTAGTCCTATTGATTCTCTTTTTGCATTCAATTCTTCTTCCTTTTCACCAATCAATCAAAAGTTTGTTTCGTTTCTTTCTTTGGGATCTGTAATATTGTCCTGTATTTCATGACAGGTATGTCTTTAATTGAGAAGATGAATCAAAAGTTACGAGAAGTTGACGTTCCACAACAATTTGTGAAATGCCTTGATGTTTTTGACAGGGAAATAATCACTCCATCGGAACTGCATTCTATGGTATAGAAGAAACTCATTTGTTACTCTTATATTGGAAACTATGGATCATGCTCAATATTCTTGTGTTCTCAAGGGAAGATGTTTACTGATGTTGACGTGTCTGACAGGTGGCTCTTCTACTAATTACACGTGTAGCTGACGTGGACACGGAACACAGTGAAGATTTCTATAAGCGTTCAACTTTCAGGTTAGCATGTTTCTCCCTGTTTTTGTTTTTTGCTTTACTCTTCAACTCAATCCTTCTCACATTCAATTGCACCATTTTCTTGAATTTGAGTCGAGTCTGGAGGCTCTTGGTTTGATTACCCTTCAAAAGAAACTGTCACAGACTTAGGTTTTCATAATTTTGAACTTGAAAAAAGCTTGAATATGGGTCAGTTTTGTAACTCACATCTCAATCTTCCTTTAATCATGAACAAGGGAATTGATGGTTTGGTAAAGATTAGTTCCCTTTCAAACTCTTGAGTAAATATCTTATTAGATCAGTCTTTAACCTTTTAGGGAAGCTTGAAGATAAGTCCAAGTCTAAACCATAATAGAAAATTAAGACAAAATTCTTATCAAGGAAGAACTTGCTTTTTTGTTTTTAATTTTTAAATATGGAGCTTTATTAATACTATTTACACCTATTAATTTCTTTGTTTTGTTACCTATTTTATACTAAAAAATTTAAAATTTAAAATTTAAATTTATTGAACACTAATTTAATTATCTAAGTTAGTTTTGAAAAAAGATTGTAGTTCCACAAAGTCTCTTATACTAACTCGATAGGTTTTAAAATTAAGACTATATAAGAAATCTAATTTTATTTTTATTTTGTCTTCTCCCTCTTTGTCGTTTTTTTTTTTGTCTTTTTCTTTTATGATCAGTTGCTTCACTACCTTGATTTCCAACTTGTCTTGTCTATAGTAAGTAATTAATACTAAATTGTTGTGATTTAGTTATTATAACTAAAATAATGTCTATTTTTGTGCTTTAAATATAAAACTATGTAATAAAGATGGATATCTAACTTTATATATAAAATAGGGAAATAGACGTGATAAATAATAATTTTTTTAAAATGTCCATTTCAGTAATAAACTCCTAATTTATGTGATTTTTTTTTTCCTTTTTTCAAGTTTTTATTTATTTATTTATTTATTTTAATTTTGAAACAGGAATGGATGCAGGATTACAAATATCACCTTGAAAAAATGACAATGACCAATCCAAAAGCCATAAACAAAAAAAATTGAAGTAATTAAACACAAAATCAATAGTTTAAAAATATAGCAGATATCATTTAGGGGTAGTAACATACATCACCATATTCAATTAGGTATTTTTGTTAGATGAACACGACTTCATAATGGTATGATATTGTTCACTTTGAGAATAAGTTTTCTTGACTTTACATTGGATTTCTCGAAAAGGCTCACACGAGGAGGGCTCATCCATGAAGAGAGTATTCTTTGATTGGGCTTCCCCAAAAGATTCATACATGAGTATTCTTTTATTATTATTCTTTTATTATTAACTATGATGATTCCCTAAATTAGTTAAGACTTAAATTTCTTTTTATAAAATTTACAGGTTTGAGAGAAAAAAAATAAAAAATTAAAATGATGGTGGCGCCGGCGGCCTGCGAGATAATATGA

mRNA sequence

TACTGCTCAACTCTTGCTCATTCGACAAAGCTTCCGCAGATTTTCTTCAGAAATGAAGAACCGCGGGGAGGCAGATGGAAGTATCCGGAAATTAACAGCGGAGGATGCCTTAGAATTTCTCAAGAATGTGAAGGACGTCATTGGAAACGAGACGGAAAAATATGAAGAATTTCTTCAACTCATGAAGGATTTAGCGTTTCAAAGAATTGACATTGTGGGCGTCATAACAGGGGTAAAGCGTCTATTCAGAGGTCATAATGACCTGATTTTGGGCTTTAATACTTTTTTGCCACAAAGATATGCAATAGCTTGTCCTCTTGAGGATGAAACGCCTCCTCGAAGGAGGCGGCCTCTTAAACTTGGAGACGCTTTGGACTATGTCAGTGAGGTTAAGAGACGGTTTGAAGGTGAGTTCCATATATTCAATTCATTTATGAGAAATTTGCATTTGTACAAAAGAGGAAAAAAGCCTCTAAGTGAGCTCCACCGGGAGGTTTGTGTACTGATGCAAGACCACCCAGACCTTGTTGAGGGTTTTGCTGATTTTCTTCCTTGTCCTTCACTCACAACAACCTCAAACAATGATCCTGAGCAGAACATTGGTGTTGACCGTCCTGATGAAGAAGGTATGTCTTTAATTGAGAAGATGAATCAAAAGTTACGAGAAGTTGACGTTCCACAACAATTTGTGAAATGCCTTGATGTTTTTGACAGGGAAATAATCACTCCATCGGAACTGCATTCTATGGTGGCTCTTCTACTAATTACACGTGTAGCTGACGTGGACACGGAACACAGTGAAGATTTCTATAAGCGTTCAACTTTCAGGAATGGATGCAGGATTACAAATATCACCTTGAAAAAATGACAATGACCAATCCAAAAGCCATAAACAAAAAAAATTGAAGTAATTAAACACAAAATCAATAGTTTAAAAATATAGCAGATATCATTTAGGGGTAGTAACATACATCACCATATTCAATTAGGTATTTTTGTTAGATGAACACGACTTCATAATGGTATGATATTGTTCACTTTGAGAATAAGTTTTCTTGACTTTACATTGGATTTCTCGAAAAGGCTCACACGAGGAGGGCTCATCCATGAAGAGAGTATTCTTTGATTGGGCTTCCCCAAAAGATTCATACATGAGTATTCTTTTATTATTATTCTTTTATTATTAACTATGATGATTCCCTAAATTAGTTAAGACTTAAATTTCTTTTTATAAAATTTACAGGTTTGAGAGAAAAAAAATAAAAAATTAAAATGATGGTGGCGCCGGCGGCCTGCGAGATAATATGA

Coding sequence (CDS)

ATGAAGAACCGCGGGGAGGCAGATGGAAGTATCCGGAAATTAACAGCGGAGGATGCCTTAGAATTTCTCAAGAATGTGAAGGACGTCATTGGAAACGAGACGGAAAAATATGAAGAATTTCTTCAACTCATGAAGGATTTAGCGTTTCAAAGAATTGACATTGTGGGCGTCATAACAGGGGTAAAGCGTCTATTCAGAGGTCATAATGACCTGATTTTGGGCTTTAATACTTTTTTGCCACAAAGATATGCAATAGCTTGTCCTCTTGAGGATGAAACGCCTCCTCGAAGGAGGCGGCCTCTTAAACTTGGAGACGCTTTGGACTATGTCAGTGAGGTTAAGAGACGGTTTGAAGGTGAGTTCCATATATTCAATTCATTTATGAGAAATTTGCATTTGTACAAAAGAGGAAAAAAGCCTCTAAGTGAGCTCCACCGGGAGGTTTGTGTACTGATGCAAGACCACCCAGACCTTGTTGAGGGTTTTGCTGATTTTCTTCCTTGTCCTTCACTCACAACAACCTCAAACAATGATCCTGAGCAGAACATTGGTGTTGACCGTCCTGATGAAGAAGGTATGTCTTTAATTGAGAAGATGAATCAAAAGTTACGAGAAGTTGACGTTCCACAACAATTTGTGAAATGCCTTGATGTTTTTGACAGGGAAATAATCACTCCATCGGAACTGCATTCTATGGTGGCTCTTCTACTAATTACACGTGTAGCTGACGTGGACACGGAACACAGTGAAGATTTCTATAAGCGTTCAACTTTCAGGAATGGATGCAGGATTACAAATATCACCTTGAAAAAATGA

Protein sequence

MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSMVALLLITRVADVDTEHSEDFYKRSTFRNGCRITNITLKK
Homology
[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy Swiss-Prot
Match: O48686 (Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=SNL3 PE=1 SV=3)

HSP 1 Score: 160.2 bits (404), Expect = 3.2e-38
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = 0 

Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS +KLT  DAL +LK VKD   ++  KY+EFL++MK+   QR+D  GVIT VK LF+GH
Sbjct: 5   GSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGH 64

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            +LILGFNTFLP+ + I    ED  PP ++R ++  +A+ +V+++K RF+G+  ++ SF+
Sbjct: 65  QELILGFNTFLPKGFEITLQPEDGQPPLKKR-VEFEEAISFVNKIKTRFQGDDRVYKSFL 124

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIGVDRP 188
             L++Y+R  K ++E+++EV +L +DH DL+  F  FLP  S T +    P     V   
Sbjct: 125 DILNMYRRDSKSITEVYQEVAILFRDHSDLLVEFTHFLPDTSATASI---PSVKTSV--- 184

Query: 189 DEEGMSLIEKMNQ 202
            E G+SL +K ++
Sbjct: 185 RERGVSLADKKDR 190

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy Swiss-Prot
Match: O04539 (Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=SNL4 PE=3 SV=3)

HSP 1 Score: 158.7 bits (400), Expect = 9.4e-38
Identity = 72/168 (42.86%), Postives = 116/168 (69.05%), Query Frame = 0 

Query: 10  SIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHN 69
           S +KLT  DAL +LK VKD   ++ +KY+EFL++MKD   QR+D  GVI  VK LF+G+ 
Sbjct: 6   SAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNR 65

Query: 70  DLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMR 129
           +LILGFNTFLP+ + I    ED+ P   ++P++  +A+ +V+++K RF+G+  ++ SF+ 
Sbjct: 66  ELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVYKSFLD 125

Query: 130 NLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
            L++Y++  K ++E++ EV +L +DH DL+  F  FLP  S T ++N+
Sbjct: 126 ILNMYRKENKSITEVYHEVAILFRDHHDLLGEFTHFLPDTSATASTND 173

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy Swiss-Prot
Match: Q9SRH9 (Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=SNL1 PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 6.3e-34
Identity = 68/156 (43.59%), Postives = 106/156 (67.95%), Query Frame = 0 

Query: 12  RKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDL 71
           +KLT  DAL +L+ VK++  ++ EKY+ FL++MKD   QR D  GVI  VK LF+GHN+L
Sbjct: 51  QKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNL 110

Query: 72  ILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNL 131
           I GFNTFLP+ Y I    ED+  P  ++ ++   A+++V+++K RF+ + H++ SF+  L
Sbjct: 111 IYGFNTFLPKGYEITLIEEDDALP--KKTVEFEQAINFVNKIKMRFKHDEHVYKSFLEIL 170

Query: 132 HLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
           ++Y++  K + E++ EV +L Q H DL+E F  FLP
Sbjct: 171 NMYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP 204

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy Swiss-Prot
Match: Q9XIE1 (Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=SNL5 PE=3 SV=3)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-33
Identity = 75/171 (43.86%), Postives = 109/171 (63.74%), Query Frame = 0 

Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           G+   LT  DAL +LK VKD+  +  EKYE FL +MKD   QR+D  GVI  VK LF+G+
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
           +DL+LGFNTFLP+ Y I    EDE P   ++P+    A+++V+ +K RF G+   +  F+
Sbjct: 96  DDLLLGFNTFLPKGYKITLQPEDEKP---KKPVDFQVAIEFVNRIKARFGGDDRAYKKFL 155

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDP 180
             L++Y++  K ++E+++EV +L QDH DL+  F  FLP     + S NDP
Sbjct: 156 DILNMYRKETKSINEVYQEVTLLFQDHEDLLGEFVHFLP-DFRGSVSVNDP 202

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy Swiss-Prot
Match: Q9LFQ3 (Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=SNL2 PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-32
Identity = 67/163 (41.10%), Postives = 110/163 (67.48%), Query Frame = 0 

Query: 5   GEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRL 64
           GE   + +KLT +DAL +LK VK++  ++ +KY+ FL++MKD   Q+ D  GVI+ VK L
Sbjct: 39  GEGGINTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKEL 98

Query: 65  FRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIF 124
           F+GHN+LI GFNTFLP+ + I   L+D   P  ++ ++  +A+ +V+++K RF+    ++
Sbjct: 99  FKGHNNLIFGFNTFLPKGFEIT--LDDVEAP-SKKTVEFEEAISFVNKIKTRFQHNELVY 158

Query: 125 NSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
            SF+  L++Y++  K ++E++ EV  L +DH DL+E F  FLP
Sbjct: 159 KSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTRFLP 198

[Close]
BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: XP_023547238.1 (paired amphipathic helix protein Sin3-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 549 bits (1415), Expect = 3.03e-197
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 

Query: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60
           MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG
Sbjct: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60

Query: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120
           VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE
Sbjct: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120

Query: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180
           FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE
Sbjct: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180

Query: 181 QNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR 240
           QNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR
Sbjct: 181 QNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR 240

Query: 241 VADVDTEHSEDFYKRSTFRNGCRITNITLKK 271
           VADVDTEHSEDFYKRSTFRNGCRITNITLKK
Sbjct: 241 VADVDTEHSEDFYKRSTFRNGCRITNITLKK 271

[Close]
BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: XP_022946192.1 (paired amphipathic helix protein Sin3-like 3 [Cucurbita moschata])

HSP 1 Score: 527 bits (1357), Expect = 5.29e-188
Identity = 260/271 (95.94%), Postives = 263/271 (97.05%), Query Frame = 0 

Query: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60
           MKNRGEADGS RKLTAEDALEFLKNVKDVIGNE EKYEEFLQLMKDLAFQRIDIVGVITG
Sbjct: 1   MKNRGEADGSTRKLTAEDALEFLKNVKDVIGNEAEKYEEFLQLMKDLAFQRIDIVGVITG 60

Query: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120
           VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE
Sbjct: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120

Query: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180
           FHIFNSFMRNLHLYKRGKKPL+ELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE
Sbjct: 121 FHIFNSFMRNLHLYKRGKKPLNELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180

Query: 181 QNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR 240
           QNIGVDRPDEEGMSLIEKMNQKL EVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR
Sbjct: 181 QNIGVDRPDEEGMSLIEKMNQKLPEVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR 240

Query: 241 VADVDTEHSEDFYKRSTFRNGCRITNITLKK 271
           VADVD+EH EDFYKRSTFRNGCRI    L+K
Sbjct: 241 VADVDSEHREDFYKRSTFRNGCRIYKYHLEK 271

[Close]
BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: XP_022999412.1 (paired amphipathic helix protein Sin3-like 3 [Cucurbita maxima])

HSP 1 Score: 362 bits (928), Expect = 1.86e-124
Identity = 174/178 (97.75%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60
           MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRID VGVITG
Sbjct: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDTVGVITG 60

Query: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120
           VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRP+KLGDAL+Y+SEVKRRFEGE
Sbjct: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPVKLGDALEYISEVKRRFEGE 120

Query: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNND 178
           FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNND
Sbjct: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNND 178

[Close]
BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: KAG6599047.1 (Paired amphipathic helix protein Sin3-like 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355 bits (911), Expect = 1.14e-121
Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 0 

Query: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60
           MKNRGEADGSI ++ +       +  +  IGNE EKYEEFLQLMKDLAFQRIDIVGVITG
Sbjct: 1   MKNRGEADGSIPEINSGGCPRISQECEGRIGNEAEKYEEFLQLMKDLAFQRIDIVGVITG 60

Query: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120
           VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE
Sbjct: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120

Query: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180
           FHIFNSFMRNLHLYKRGKKPL+ELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE
Sbjct: 121 FHIFNSFMRNLHLYKRGKKPLNELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180

Query: 181 QNIGVDRPDEEG 192
           QNIGVDRPDEEG
Sbjct: 181 QNIGVDRPDEEG 192

[Close]
BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match: KAG7029992.1 (Paired amphipathic helix protein Sin3-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307 bits (786), Expect = 5.41e-103
Identity = 159/197 (80.71%), Postives = 159/197 (80.71%), Query Frame = 0 

Query: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60
           MKNRGEADGSIRKLTAEDALEFLKNVKD IGNETEKYE FLQLMKDLAFQRIDIVGVITG
Sbjct: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDAIGNETEKYEAFLQLMKDLAFQRIDIVGVITG 60

Query: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120
           VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVK      
Sbjct: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVK------ 120

Query: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180
                                      VCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE
Sbjct: 121 ---------------------------VCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 164

Query: 181 QNIGVDRPDEEGMSLIE 197
           QNIGVDRPDEEG  L E
Sbjct: 181 QNIGVDRPDEEGDELSE 164

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy TrEMBL
Match: A0A6J1G327 (paired amphipathic helix protein Sin3-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111450349 PE=4 SV=1)

HSP 1 Score: 527 bits (1357), Expect = 2.56e-188
Identity = 260/271 (95.94%), Postives = 263/271 (97.05%), Query Frame = 0 

Query: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60
           MKNRGEADGS RKLTAEDALEFLKNVKDVIGNE EKYEEFLQLMKDLAFQRIDIVGVITG
Sbjct: 1   MKNRGEADGSTRKLTAEDALEFLKNVKDVIGNEAEKYEEFLQLMKDLAFQRIDIVGVITG 60

Query: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120
           VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE
Sbjct: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120

Query: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180
           FHIFNSFMRNLHLYKRGKKPL+ELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE
Sbjct: 121 FHIFNSFMRNLHLYKRGKKPLNELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPE 180

Query: 181 QNIGVDRPDEEGMSLIEKMNQKLREVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR 240
           QNIGVDRPDEEGMSLIEKMNQKL EVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR
Sbjct: 181 QNIGVDRPDEEGMSLIEKMNQKLPEVDVPQQFVKCLDVFDREIITPSELHSMVALLLITR 240

Query: 241 VADVDTEHSEDFYKRSTFRNGCRITNITLKK 271
           VADVD+EH EDFYKRSTFRNGCRI    L+K
Sbjct: 241 VADVDSEHREDFYKRSTFRNGCRIYKYHLEK 271

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy TrEMBL
Match: A0A6J1KAT5 (paired amphipathic helix protein Sin3-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111493793 PE=4 SV=1)

HSP 1 Score: 362 bits (928), Expect = 8.99e-125
Identity = 174/178 (97.75%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITG 60
           MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRID VGVITG
Sbjct: 1   MKNRGEADGSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDTVGVITG 60

Query: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGE 120
           VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRP+KLGDAL+Y+SEVKRRFEGE
Sbjct: 61  VKRLFRGHNDLILGFNTFLPQRYAIACPLEDETPPRRRRPVKLGDALEYISEVKRRFEGE 120

Query: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNND 178
           FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNND
Sbjct: 121 FHIFNSFMRNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNND 178

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy TrEMBL
Match: A0A5D3DIK1 (Paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00170 PE=4 SV=1)

HSP 1 Score: 233 bits (594), Expect = 1.31e-66
Identity = 135/333 (40.54%), Postives = 181/333 (54.35%), Query Frame = 0 

Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS++KLT  DALE+LKNVK +  +  EKYE+FL++MK+   QRID VGVI  VK+LF+GH
Sbjct: 5   GSLQKLTTNDALEYLKNVKTIFRDRKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGH 64

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            DLILGFNTFLP+ YAI CPLEDETPP++++P++  +A+++V ++K RFEG+ H++ SF+
Sbjct: 65  RDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFL 124

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN----------- 188
             L+LY++  K +SE++REV  L+QDHPDL+  F  FLP  S TT++N+           
Sbjct: 125 EILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNHVSSMRNSVLRD 184

Query: 189 -----DPEQ------------NIGVDRPD------------------------------- 237
                 P Q            +IGV+ PD                               
Sbjct: 185 RNSSIPPIQQKERAMAPHAYHDIGVNHPDCDHARVTIKGDKEKCQHSEKEKDRRDNTDSM 244

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy TrEMBL
Match: A0A0A0KQL9 (HDAC_interact domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G484650 PE=4 SV=1)

HSP 1 Score: 234 bits (598), Expect = 1.42e-66
Identity = 133/333 (39.94%), Postives = 181/333 (54.35%), Query Frame = 0 

Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS++KLT  DALE+LKNVKD+  ++ EKYE+FL++MK+   QRID VGVI  VK+LF+GH
Sbjct: 26  GSLQKLTTNDALEYLKNVKDIFRDKKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGH 85

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            DLILGFNTFLP+ YAI CPLEDETPP++++P++  +A+++V ++K RFEG+ H++ SF+
Sbjct: 86  RDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFL 145

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN----------- 188
             L+LY++  K +SE++REV  L+QDHPDL+  F  FLP  S TT++N+           
Sbjct: 146 EILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNHVSSMRNSVLRD 205

Query: 189 -----------------DPEQNIGVDRPD------------------------------- 237
                              + +IGV+ PD                               
Sbjct: 206 RNSSIPPIQQKERATTPHTDHDIGVNHPDCDHARVTIKGDKEKCQHSEKEKDRRDNTDSM 265

[Close]
BLAST of Cp4.1LG11g07500 vs. ExPASy TrEMBL
Match: A0A1S3CPW0 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503331 PE=4 SV=1)

HSP 1 Score: 234 bits (597), Expect = 1.94e-66
Identity = 133/333 (39.94%), Postives = 180/333 (54.05%), Query Frame = 0 

Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS++KLT  DALE+LKNVK +  +  EKYE+FL++MK+   QRID VGVI  VK+LF+GH
Sbjct: 35  GSLQKLTTNDALEYLKNVKTIFRDRKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGH 94

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            DLILGFNTFLP+ YAI CPLEDETPP++++P++  +A+++V ++K RFEG+ H++ SF+
Sbjct: 95  RDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFL 154

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN----------- 188
             L+LY++  K +SE++REV  L+QDHPDL+  F  FLP  S TT++N+           
Sbjct: 155 EILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNHVSSMRNSVLRD 214

Query: 189 -----------------DPEQNIGVDRPD------------------------------- 237
                              + +IGV+ PD                               
Sbjct: 215 RNSSIPPIQQKERAMAPHADHDIGVNHPDCGHARVTIKGDKEKCQHSEKEKDRKDNTDSM 274

[Close]
BLAST of Cp4.1LG11g07500 vs. TAIR 10
Match: AT1G24190.1 (SIN3-like 3 )

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-39
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = 0 

Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS +KLT  DAL +LK VKD   ++  KY+EFL++MK+   QR+D  GVIT VK LF+GH
Sbjct: 5   GSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGH 64

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            +LILGFNTFLP+ + I    ED  PP ++R ++  +A+ +V+++K RF+G+  ++ SF+
Sbjct: 65  QELILGFNTFLPKGFEITLQPEDGQPPLKKR-VEFEEAISFVNKIKTRFQGDDRVYKSFL 124

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIGVDRP 188
             L++Y+R  K ++E+++EV +L +DH DL+  F  FLP  S T +    P     V   
Sbjct: 125 DILNMYRRDSKSITEVYQEVAILFRDHSDLLVEFTHFLPDTSATASI---PSVKTSV--- 184

Query: 189 DEEGMSLIEKMNQ 202
            E G+SL +K ++
Sbjct: 185 RERGVSLADKKDR 190

[Close]
BLAST of Cp4.1LG11g07500 vs. TAIR 10
Match: AT1G24190.2 (SIN3-like 3 )

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-39
Identity = 82/193 (42.49%), Postives = 126/193 (65.28%), Query Frame = 0 

Query: 9   GSIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGH 68
           GS +KLT  DAL +LK VKD   ++  KY+EFL++MK+   QR+D  GVIT VK LF+GH
Sbjct: 5   GSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKELFKGH 64

Query: 69  NDLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFM 128
            +LILGFNTFLP+ + I    ED  PP ++R ++  +A+ +V+++K RF+G+  ++ SF+
Sbjct: 65  QELILGFNTFLPKGFEITLQPEDGQPPLKKR-VEFEEAISFVNKIKTRFQGDDRVYKSFL 124

Query: 129 RNLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNNDPEQNIGVDRP 188
             L++Y+R  K ++E+++EV +L +DH DL+  F  FLP  S T +    P     V   
Sbjct: 125 DILNMYRRDSKSITEVYQEVAILFRDHSDLLVEFTHFLPDTSATASI---PSVKTSV--- 184

Query: 189 DEEGMSLIEKMNQ 202
            E G+SL +K ++
Sbjct: 185 RERGVSLADKKDR 190

[Close]
BLAST of Cp4.1LG11g07500 vs. TAIR 10
Match: AT1G70060.1 (SIN3-like 4 )

HSP 1 Score: 158.7 bits (400), Expect = 6.7e-39
Identity = 72/168 (42.86%), Postives = 116/168 (69.05%), Query Frame = 0 

Query: 10  SIRKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHN 69
           S +KLT  DAL +LK VKD   ++ +KY+EFL++MKD   QR+D  GVI  VK LF+G+ 
Sbjct: 6   SAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNR 65

Query: 70  DLILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMR 129
           +LILGFNTFLP+ + I    ED+ P   ++P++  +A+ +V+++K RF+G+  ++ SF+ 
Sbjct: 66  ELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVYKSFLD 125

Query: 130 NLHLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLPCPSLTTTSNN 178
            L++Y++  K ++E++ EV +L +DH DL+  F  FLP  S T ++N+
Sbjct: 126 ILNMYRKENKSITEVYHEVAILFRDHHDLLGEFTHFLPDTSATASTND 173

[Close]
BLAST of Cp4.1LG11g07500 vs. TAIR 10
Match: AT3G01320.1 (SIN3-like 1 )

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-35
Identity = 68/156 (43.59%), Postives = 106/156 (67.95%), Query Frame = 0 

Query: 12  RKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDL 71
           +KLT  DAL +L+ VK++  ++ EKY+ FL++MKD   QR D  GVI  VK LF+GHN+L
Sbjct: 51  QKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNL 110

Query: 72  ILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNL 131
           I GFNTFLP+ Y I    ED+  P  ++ ++   A+++V+++K RF+ + H++ SF+  L
Sbjct: 111 IYGFNTFLPKGYEITLIEEDDALP--KKTVEFEQAINFVNKIKMRFKHDEHVYKSFLEIL 170

Query: 132 HLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
           ++Y++  K + E++ EV +L Q H DL+E F  FLP
Sbjct: 171 NMYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP 204

[Close]
BLAST of Cp4.1LG11g07500 vs. TAIR 10
Match: AT3G01320.2 (SIN3-like 1 )

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-35
Identity = 68/156 (43.59%), Postives = 106/156 (67.95%), Query Frame = 0 

Query: 12  RKLTAEDALEFLKNVKDVIGNETEKYEEFLQLMKDLAFQRIDIVGVITGVKRLFRGHNDL 71
           +KLT  DAL +L+ VK++  ++ EKY+ FL++MKD   QR D  GVI  VK LF+GHN+L
Sbjct: 51  QKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNNL 110

Query: 72  ILGFNTFLPQRYAIACPLEDETPPRRRRPLKLGDALDYVSEVKRRFEGEFHIFNSFMRNL 131
           I GFNTFLP+ Y I    ED+  P  ++ ++   A+++V+++K RF+ + H++ SF+  L
Sbjct: 111 IYGFNTFLPKGYEITLIEEDDALP--KKTVEFEQAINFVNKIKMRFKHDEHVYKSFLEIL 170

Query: 132 HLYKRGKKPLSELHREVCVLMQDHPDLVEGFADFLP 168
           ++Y++  K + E++ EV +L Q H DL+E F  FLP
Sbjct: 171 NMYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP 204

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g07500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O486863.2e-3842.49Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=... [more]
O045399.4e-3842.86Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q9SRH96.3e-3443.59Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q9XIE13.1e-3343.86Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q9LFQ32.0e-3241.10Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of Cp4.1LG11g07500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023547238.13.03e-197100.00paired amphipathic helix protein Sin3-like 3 [Cucurbita pepo subsp. pepo][more]
XP_022946192.15.29e-18895.94paired amphipathic helix protein Sin3-like 3 [Cucurbita moschata][more]
XP_022999412.11.86e-12497.75paired amphipathic helix protein Sin3-like 3 [Cucurbita maxima][more]
KAG6599047.11.14e-12189.58Paired amphipathic helix protein Sin3-like 3, partial [Cucurbita argyrosperma su... [more]
KAG7029992.15.41e-10380.71Paired amphipathic helix protein Sin3-like 3, partial [Cucurbita argyrosperma su... [more]
BLAST of Cp4.1LG11g07500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G3272.56e-18895.94paired amphipathic helix protein Sin3-like 3 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1KAT58.99e-12597.75paired amphipathic helix protein Sin3-like 3 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A5D3DIK11.31e-6640.54Paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucumis melo var. mak... [more]
A0A0A0KQL91.42e-6639.94HDAC_interact domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G4846... [more]
A0A1S3CPW01.94e-6639.94paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucumis melo OX=3656 ... [more]
BLAST of Cp4.1LG11g07500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G24190.12.3e-3942.49SIN3-like 3 [more]
AT1G24190.22.3e-3942.49SIN3-like 3 [more]
AT1G70060.16.7e-3942.86SIN3-like 4 [more]
AT3G01320.14.5e-3543.59SIN3-like 1 [more]
AT3G01320.24.5e-3543.59SIN3-like 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003822Paired amphipathic helixPFAMPF02671PAHcoord: 35..79
e-value: 8.6E-13
score: 48.1
coord: 123..166
e-value: 2.9E-7
score: 30.5
IPR003822Paired amphipathic helixPROSITEPS51477PAHcoord: 99..169
score: 15.56893
IPR003822Paired amphipathic helixPROSITEPS51477PAHcoord: 12..82
score: 14.917297
IPR036600Paired amphipathic helix superfamilyGENE3D1.20.1160.11Paired amphipathic helixcoord: 105..167
e-value: 1.5E-14
score: 56.1
IPR036600Paired amphipathic helix superfamilyGENE3D1.20.1160.11Paired amphipathic helixcoord: 18..80
e-value: 1.3E-18
score: 69.1
IPR036600Paired amphipathic helix superfamilySUPERFAMILY47762PAH2 domaincoord: 98..167
IPR036600Paired amphipathic helix superfamilySUPERFAMILY47762PAH2 domaincoord: 13..80
NoneNo IPR availablePANTHERPTHR12346:SF0SIN3A, ISOFORM Gcoord: 3..237
IPR039774Transcriptional regulatory protein Sin3-likePANTHERPTHR12346SIN3B-RELATEDcoord: 3..237

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g07500.1Cp4.1LG11g07500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003714 transcription corepressor activity