Cp4.1LG11g07350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g07350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	TMV resistance protein N-like
Location	Cp4.1LG11: 5986966 .. 5988830 (+)
RNA-Seq Expression	Cp4.1LG11g07350
Synteny	Cp4.1LG11g07350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTGTACAACAAACTCCTTTGCTCCATCAAATTTCTTCAATCAAAGTTCGTGACCGGTCTCTCTCTAGTTCACGAGTATTGCCATTGCTGCCAACTCCTCCTCAACCTCCATCAATGAGTNAAAACTAATGAATAAAGGGTTATTTACTAAACTCTTGGAAGCAACTCTCAAAGTTGGAAACCGATTGAATTCAGGAACAACGAGAGGTAATGCAAAAGCTTTCCATCTCAATTTACTCTTAAGACTTTCAGATGTAAAAAGCACACATAGAAAATTCATTGTCAAAGAAGTCATAAAATTCGAAGGGAAAAAACAATTCTCAAACACAAATTCAAAGAATCTCAAATCGAAAAAGGAAATAGAAATCGAATACATAATACTTGGATTATCAGCTATGGAATCACTCACCTTAGAGCTCTCTAACGTCAAGAAAGCGTCCACAATCGACTACGAAACCTTCACTATCACTTGCCCTAATCTATTAAGCAAAATCTCAGAGATACAAAACCTTCTATCGATTGAAGGCGGTGGTGAATACAAGAGAAAGATGTTAGAATTTGTGAAATCCGCAACGGAAGAAGTTGAGATAGCAAGAAGAGAACAAAAAAGAGTGTTGGATGAATTGAAGAAGACAAATGAGTACTATGAAACAGGGGATAGAGAAAATTCGTTAGGGATTTTTGTGATAGTAAAGAATTTTGTGAATGCCGTGAATCAGGTGTGTCGTGAAATAGTTGGGGAATTGAGAGGGAAGATCAAGATGGGAAATATGGATGCATGTCTGCCATTGAAGAGCACAATTAGCTTGAGATTTCCACGTTTGGCGGAACATTTCAAGTGTAGAAGATGTCCCGCCGATTCCATGGATTAGCTTTTCTAAATTGGATTCTCCTAAAAAAAAAATCTTTTATATTTGGTCTTGAAAAGATTAAATGTACAAATTATTTTATAAAGAAATACACATTTTTGATTAATATAGTTGATTGATTTCATAGCTAATGTGATATAAATCTTTAGTAAATCTATTTGCCTGTTTGTTGTGATTCTTCTTGATTCTGATAATGTATCATAATTGTTAGATAACTCCAAACTAATAAGAAATATGAATAATATTATAGACTCAACCACTCATGGATATATGGGAATGTGGCTTTCTATCACATGTTAAGGAAGCTTCAAAGCAATTCAACTTCAGGAACACTAGATCCATGAGATCTTAAAGGAAATTTTGAAGGTTGAAAATCTTGATAAAGAAATCAACATGGTAAGAAATAGACTACGTTCAAATAAAGTTCTTATAGCTCTAGATGATATGGATAAGCTTGAGCAAGTAGAAGCATTGGTTGGTAGACATGATTGGTTTGACGCCGGTAGTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGGTCATTCATTGGCTCTTGTTGTTTTGGATTCTTTCCTTTGTACTAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

mRNA sequence

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

Coding sequence (CDS)

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

Protein sequence

RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQIYNHCDNKKPSFTFIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRYDQGEWTSILDEFENSLNKDINICLK

Homology

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: XP_023546416.1 (formin-like protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125 bits (313), Expect = 1.10e-30
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQ 60
           RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQ
Sbjct: 105 RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQ 164

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: XP_022946272.1 (TMV resistance protein N-like [Cucurbita moschata] >XP_022946273.1 TMV resistance protein N-like [Cucurbita moschata])

HSP 1 Score: 127 bits (318), Expect = 1.41e-30
Identity = 65/90 (72.22%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 75  IHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCK------------ 134
           IH+FD+KYRIQRMN NDALKLFS HAFKKSHPPSTYLD+SKRATSYCK            
Sbjct: 345 IHEFDQKYRIQRMNLNDALKLFSWHAFKKSHPPSTYLDLSKRATSYCKGHPLALVVLGSF 404

Query: 135 ---RYDQGEWTSILDEFENSLNKDINICLK 149
              RYDQ EW SILDEFENSLNKDIN  L+
Sbjct: 405 LCTRYDQAEWASILDEFENSLNKDINDILQ 434

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: KAG6599273.1 (Disease resistance protein RUN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125 bits (315), Expect = 3.56e-30
Identity = 64/90 (71.11%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 75  IHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCK------------ 134
           IH+FD+KYR+QRMN NDALKLFS HAFKKSHPPSTYLD+SKRATSYCK            
Sbjct: 345 IHEFDQKYRMQRMNLNDALKLFSWHAFKKSHPPSTYLDLSKRATSYCKGHPLALVVLGSF 404

Query: 135 ---RYDQGEWTSILDEFENSLNKDINICLK 149
              RYDQ EW SILDEFENSLNKDIN  L+
Sbjct: 405 LCTRYDQAEWASILDEFENSLNKDINDILQ 434

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: KAG6599022.1 (Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (297), Expect = 7.16e-28
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  RILAKLKEHQVESQEFTRLEGKLNGLIVEE-----DGLDVMYWKKNNEEDEEMGFARDGS 60
          RILAKLKEHQVESQEFTRLEGKLNGLIVEE     DGLDVMYWKKNNEEDEEMGFARDGS
Sbjct: 31 RILAKLKEHQVESQEFTRLEGKLNGLIVEELIVEEDGLDVMYWKKNNEEDEEMGFARDGS 90

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: KAG6591801.1 (Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (297), Expect = 7.87e-28
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1   RILAKLKEHQVESQEFTRLEGKLNGLIVEE-----DGLDVMYWKKNNEEDEEMGFARDGS 60
           RILAKLKEHQVESQEFTRLEGKLNGLIVEE     DGLDVMYWKKNNEEDEEMGFARDGS
Sbjct: 105 RILAKLKEHQVESQEFTRLEGKLNGLIVEELIVEEDGLDVMYWKKNNEEDEEMGFARDGS 164

[Close]

BLAST of Cp4.1LG11g07350 vs. ExPASy TrEMBL
Match: A0A6J1G3A0 (TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450406 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 6.84e-31
Identity = 65/90 (72.22%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 75  IHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCK------------ 134
           IH+FD+KYRIQRMN NDALKLFS HAFKKSHPPSTYLD+SKRATSYCK            
Sbjct: 345 IHEFDQKYRIQRMNLNDALKLFSWHAFKKSHPPSTYLDLSKRATSYCKGHPLALVVLGSF 404

Query: 135 ---RYDQGEWTSILDEFENSLNKDINICLK 149
              RYDQ EW SILDEFENSLNKDIN  L+
Sbjct: 405 LCTRYDQAEWASILDEFENSLNKDINDILQ 434

[Close]

BLAST of Cp4.1LG11g07350 vs. ExPASy TrEMBL
Match: A0A6J1KG27 (Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493942 PE=3 SV=1)

HSP 1 Score: 110 bits (276), Expect = 2.82e-25
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQ 60
           RILAKLKEHQVESQEFTR EG LNGLIVEEDGLDVMYWKKNNEEDEEMGF+RDGS  IP+
Sbjct: 116 RILAKLKEHQVESQEFTRFEGNLNGLIVEEDGLDVMYWKKNNEEDEEMGFSRDGS-IIPE 175

[Close]

BLAST of Cp4.1LG11g07350 vs. ExPASy TrEMBL
Match: A0A6J1G361 (TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450404 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 4.23e-25
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 75  IHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCK------------ 134
           IH+FD+KY IQ MNH+DAL+LFS HAFKKSHPPS Y+D+SKRATSYCK            
Sbjct: 304 IHEFDQKYGIQGMNHDDALELFSWHAFKKSHPPSAYVDLSKRATSYCKGHPLALVVLGSF 363

Query: 135 ---RYDQGEWTSILDEFENSLNKDINICLK 149
              R D+ EW SILDEFENSL+KDI+  L+
Sbjct: 364 LCTRDDEAEWRSILDEFENSLSKDISDILR 393

[Close]

BLAST of Cp4.1LG11g07350 vs. ExPASy TrEMBL
Match: A0A6J1KCS2 (Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493742 PE=3 SV=1)

HSP 1 Score: 110 bits (274), Expect = 5.36e-25
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQ 60
           RILAKLKEHQVESQEFTR EG LNGLIVEEDGLDVMYWKK+NEEDEEMGFARDGS  IP+
Sbjct: 113 RILAKLKEHQVESQEFTRFEGNLNGLIVEEDGLDVMYWKKDNEEDEEMGFARDGS-IIPE 172

[Close]

BLAST of Cp4.1LG11g07350 vs. ExPASy TrEMBL
Match: A0A6J1G481 (Formin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450601 PE=3 SV=1)

HSP 1 Score: 107 bits (266), Expect = 6.38e-24
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQ 60
           RILAKLKEH+VESQEFTR +G LNGLIVEEDGLDVMYWKK+NEEDEEMGFARDGS  +P+
Sbjct: 114 RILAKLKEHRVESQEFTRFDGNLNGLIVEEDGLDVMYWKKDNEEDEEMGFARDGS-IVPE 173

[Close]

BLAST of Cp4.1LG11g07350 vs. TAIR 10
Match: AT4G14370.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 42.4 bits (98), Expect = 3.8e-04
Identity = 24/88 (27.27%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRAT--------------SYC 135
           H  ++ Y +   +  +AL++F  +AF+KS PP  +  ++KR T              S  
Sbjct: 293 HGINKTYHVGFPSIEEALEIFCIYAFRKSSPPDGFKKLTKRVTNVFDNLPLGLRVMGSSL 352

Query: 136 KRYDQGEWTSILDEFENSLNKDINICLK 150
           +   + EW ++LD  E SL+++I   L+
Sbjct: 353 RGKGEDEWEALLDRLETSLDRNIEGALR 380

[Close]

BLAST of Cp4.1LG11g07350 vs. TAIR 10
Match: AT1G24150.1 (formin homologue 4 )

HSP 1 Score: 41.2 bits (95), Expect = 8.5e-04
Identity = 22/64 (34.38%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 6   LKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQIYNHC 65
           L E  +  + FTR  G + GLI++E+GLDV+YW+K  +   +      G S   +I +  
Sbjct: 123 LAEAALAREGFTRFGGNVKGLILDENGLDVLYWRKLQQSQRD----NKGGSFRKEIIHGD 182

Query: 66  DNKK 70
           D +K
Sbjct: 183 DEEK 182

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07350 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546416.1	1.10e-30	100.00	formin-like protein 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022946272.1	1.41e-30	72.22	TMV resistance protein N-like [Cucurbita moschata] >XP_022946273.1 TMV resistanc...	[more]
KAG6599273.1	3.56e-30	71.11	Disease resistance protein RUN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6599022.1	7.16e-28	92.42	Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6591801.1	7.87e-28	92.42	Formin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG11g07350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3A0	6.84e-31	72.22	TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450406 PE=4...	[more]
A0A6J1KG27	2.82e-25	90.16	Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493942 PE=3 SV=1	[more]
A0A6J1G361	4.23e-25	62.22	TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450404 PE=4...	[more]
A0A6J1KCS2	5.36e-25	90.16	Formin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493742 PE=3 SV=1	[more]
A0A6J1G481	6.38e-24	85.25	Formin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450601 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g07350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14370.1	3.8e-04	27.27	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G24150.1	8.5e-04	34.38	formin homologue 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 76..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07350.1	Cp4.1LG11g07350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016021	integral component of membrane