Cp4.1LG11g07340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g07340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	TMV resistance protein N-like
Location	Cp4.1LG11: 5988840 .. 5989235 (+)
RNA-Seq Expression	Cp4.1LG11g07340
Synteny	Cp4.1LG11g07340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAAAAAACAGTCAATGTAGAATCTTCTGAGCCTGAAAAAATGTGTAGGTTGTGGTTGGTACAAGATGTTTTGAAGGTGTTCAATGATAATTCAGTGAGTAGCACTTACCCAAACTTTCTTTAATTTACTTGTTTGCTATACTTGGTGATCGAAAATGTTTGTCAAAGTAAGTCGATAGTAATGTTGAATTACTAAACTATGAGTTTGTAGGGAACCGATGCAATTAAAGCTATAAAGTTGGAGTTACCAAAACCCACAAGGTTGGATGTTGATCCTCGAGCTTTTAGAAACATGAAAAACCTAAGATTGCTAATGGTTCAAAATGCAAGATTTTTCACTAATATTGAATATCTACGGAATATCTACAGATTTTTCACAATACAAACATGA

mRNA sequence

ATGGTCAATGTAGAATCTTCTGAGCCTGAAAAAATGTGTAGGTTGTGGTTGGTACAAGATGTTTTGAAGGTGTTCAATGATAATTCAGGAACCGATGCAATTAAAGCTATAAAGTTGGAGTTACCAAAACCCACAAGGTTGGATGTTGATCCTCGAGCTTTTAGAAACATGAAAAACCTAAGATTGCTAATGGTTCAAAATGCAAGATTTTTCACTAATATTGAATATCTACGGAATATCTACAGATTTTTCACAATACAAACATGA

Coding sequence (CDS)

ATGGTCAATGTAGAATCTTCTGAGCCTGAAAAAATGTGTAGGTTGTGGTTGGTACAAGATGTTTTGAAGGTGTTCAATGATAATTCAGGAACCGATGCAATTAAAGCTATAAAGTTGGAGTTACCAAAACCCACAAGGTTGGATGTTGATCCTCGAGCTTTTAGAAACATGAAAAACCTAAGATTGCTAATGGTTCAAAATGCAAGATTTTTCACTAATATTGAATATCTACGGAATATCTACAGATTTTTCACAATACAAACATGA

Protein sequence

MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNLRLLMVQNARFFTNIEYLRNIYRFFTIQT

Homology

[Close]

BLAST of Cp4.1LG11g07340 vs. ExPASy Swiss-Prot
Match: F4JT78 (Disease resistance protein RPP2A OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 1    MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
            +V+ E  +P +  RLW  +D++ V  +NSGT+AI+ I L+    T  ++ P  F  M NL
Sbjct: 1038 IVHEEDEDPCERSRLWDSKDIVDVLTNNSGTEAIEGIFLDASDLT-CELSPTVFGKMYNL 1097

Query: 61   RLL 64
            RLL
Sbjct: 1098 RLL 1099

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: XP_022946272.1 (TMV resistance protein N-like [Cucurbita moschata] >XP_022946273.1 TMV resistance protein N-like [Cucurbita moschata])

HSP 1 Score: 134 bits (338), Expect = 2.60e-34
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEPEK  RLWLVQDVLKV +DNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL
Sbjct: 507 IVNGESSEPEKRSRLWLVQDVLKVLSDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 566

Query: 61  RLLMVQNARFFTNIEYLRN 79
           RLLMV NARF T+I+YL N
Sbjct: 567 RLLMVGNARFSTDIKYLPN 585

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: XP_022946583.1 (TMV resistance protein N-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 122 bits (307), Expect = 4.01e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEP K  RLWL +D+LKVF DNSGTDA+KAIKLELP  TRLDVDPRAFR MKNL
Sbjct: 398 IVNGESSEPGKRSRLWLEEDILKVFIDNSGTDAVKAIKLELPNLTRLDVDPRAFRKMKNL 457

Query: 61  RLLMVQNARFFTNIEYL 77
           RLLMVQNARF TN++YL
Sbjct: 458 RLLMVQNARFSTNLKYL 474

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: XP_022946582.1 (TMV resistance protein N-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 122 bits (307), Expect = 4.01e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEP K  RLWL +D+LKVF DNSGTDA+KAIKLELP  TRLDVDPRAFR MKNL
Sbjct: 411 IVNGESSEPGKRSRLWLEEDILKVFIDNSGTDAVKAIKLELPNLTRLDVDPRAFRKMKNL 470

Query: 61  RLLMVQNARFFTNIEYL 77
           RLLMVQNARF TN++YL
Sbjct: 471 RLLMVQNARFSTNLKYL 487

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: KAG6598998.1 (Disease resistance protein RUN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (307), Expect = 4.02e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEP K  RLWL +D+LKVF DNSGTDA+KAIKLELP  TRLDVDPRAFR MKNL
Sbjct: 507 IVNGESSEPGKRSRLWLEEDILKVFIDNSGTDAVKAIKLELPNLTRLDVDPRAFRKMKNL 566

Query: 61  RLLMVQNARFFTNIEYL 77
           RLLMVQNARF TN++YL
Sbjct: 567 RLLMVQNARFSTNLKYL 583

[Close]

BLAST of Cp4.1LG11g07340 vs. NCBI nr
Match: XP_022946581.1 (TMV resistance protein N-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 122 bits (307), Expect = 4.02e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEP K  RLWL +D+LKVF DNSGTDA+KAIKLELP  TRLDVDPRAFR MKNL
Sbjct: 507 IVNGESSEPGKRSRLWLEEDILKVFIDNSGTDAVKAIKLELPNLTRLDVDPRAFRKMKNL 566

Query: 61  RLLMVQNARFFTNIEYL 77
           RLLMVQNARF TN++YL
Sbjct: 567 RLLMVQNARFSTNLKYL 583

[Close]

BLAST of Cp4.1LG11g07340 vs. ExPASy TrEMBL
Match: A0A6J1G3A0 (TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450406 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 1.26e-34
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEPEK  RLWLVQDVLKV +DNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL
Sbjct: 507 IVNGESSEPEKRSRLWLVQDVLKVLSDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 566

Query: 61  RLLMVQNARFFTNIEYLRN 79
           RLLMV NARF T+I+YL N
Sbjct: 567 RLLMVGNARFSTDIKYLPN 585

[Close]

BLAST of Cp4.1LG11g07340 vs. ExPASy TrEMBL
Match: A0A6J1G4A0 (TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.94e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEP K  RLWL +D+LKVF DNSGTDA+KAIKLELP  TRLDVDPRAFR MKNL
Sbjct: 398 IVNGESSEPGKRSRLWLEEDILKVFIDNSGTDAVKAIKLELPNLTRLDVDPRAFRKMKNL 457

Query: 61  RLLMVQNARFFTNIEYL 77
           RLLMVQNARF TN++YL
Sbjct: 458 RLLMVQNARFSTNLKYL 474

[Close]

BLAST of Cp4.1LG11g07340 vs. ExPASy TrEMBL
Match: A0A6J1G440 (TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.94e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEP K  RLWL +D+LKVF DNSGTDA+KAIKLELP  TRLDVDPRAFR MKNL
Sbjct: 411 IVNGESSEPGKRSRLWLEEDILKVFIDNSGTDAVKAIKLELPNLTRLDVDPRAFRKMKNL 470

Query: 61  RLLMVQNARFFTNIEYL 77
           RLLMVQNARF TN++YL
Sbjct: 471 RLLMVQNARFSTNLKYL 487

[Close]

BLAST of Cp4.1LG11g07340 vs. ExPASy TrEMBL
Match: A0A6J1G421 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.95e-30
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ESSEP K  RLWL +D+LKVF DNSGTDA+KAIKLELP  TRLDVDPRAFR MKNL
Sbjct: 507 IVNGESSEPGKRSRLWLEEDILKVFIDNSGTDAVKAIKLELPNLTRLDVDPRAFRKMKNL 566

Query: 61  RLLMVQNARFFTNIEYL 77
           RLLMVQNARF TN++YL
Sbjct: 567 RLLMVQNARFSTNLKYL 583

[Close]

BLAST of Cp4.1LG11g07340 vs. ExPASy TrEMBL
Match: A0A6J1G361 (TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450404 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 8.06e-29
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +VN ES EP K  RLWLVQDVLKVF DNSGTDAI+AIKLELP PT+L+V+PRA RNMKNL
Sbjct: 466 IVNGESFEPGKRSRLWLVQDVLKVFADNSGTDAIRAIKLELPNPTKLEVNPRALRNMKNL 525

Query: 61  RLLMVQNARFFTNIE 75
           RLL+VQNARF TN++
Sbjct: 526 RLLIVQNARFSTNLK 540

[Close]

BLAST of Cp4.1LG11g07340 vs. TAIR 10
Match: AT4G19500.1 (nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 1    MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
            +V+ E  +P +  RLW  +D++ V  +NSGT+AI+ I L+    T  ++ P  F  M NL
Sbjct: 1038 IVHEEDEDPCERSRLWDSKDIVDVLTNNSGTEAIEGIFLDASDLT-CELSPTVFGKMYNL 1097

Query: 61   RLL 64
            RLL
Sbjct: 1098 RLL 1099

[Close]

BLAST of Cp4.1LG11g07340 vs. TAIR 10
Match: AT4G19500.2 (nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 1   MVNVESSEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNL 60
           +V+ E  +P +  RLW  +D++ V  +NSGT+AI+ I L+    T  ++ P  F  M NL
Sbjct: 515 IVHEEDEDPCERSRLWDSKDIVDVLTNNSGTEAIEGIFLDASDLT-CELSPTVFGKMYNL 574

Query: 61  RLL 64
           RLL
Sbjct: 575 RLL 576

[Close]

BLAST of Cp4.1LG11g07340 vs. TAIR 10
Match: AT5G17680.1 (disease resistance protein (TIR-NBS-LRR class), putative )

HSP 1 Score: 42.0 bits (97), Expect = 3.0e-04
Identity = 19/64 (29.69%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 7   SEPEKMCRLWLVQDVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNLRLLMVQ 66
           + P +   LW  +D+  + ++NSGT  ++ I L L + + +    RAF  + NL+LL   
Sbjct: 500 NNPAQRLLLWDPEDICHLLSENSGTQLVEGISLNLSEISEVFASDRAFEGLSNLKLLNFY 559

Query: 67  NARF 71
           +  F
Sbjct: 560 DLSF 563

[Close]

BLAST of Cp4.1LG11g07340 vs. TAIR 10
Match: AT5G22690.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 40.4 bits (93), Expect = 8.6e-04
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = 0


Query: 20  DVLKVFNDNSGTDAIKAIKLELPKPTRLDVDPRAFRNMKNLRLL 64
           D+L V NDN+GT  +  I  ++ +   L +  RAF+ M NLR L
Sbjct: 519 DILDVLNDNTGTKKVLGISFDMSEIEELHIHKRAFKRMPNLRFL 562

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JT78	2.2e-04	39.68	Disease resistance protein RPP2A OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=2 S...	[more]

BLAST of Cp4.1LG11g07340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946272.1	2.60e-34	86.08	TMV resistance protein N-like [Cucurbita moschata] >XP_022946273.1 TMV resistanc...	[more]
XP_022946583.1	4.01e-30	79.22	TMV resistance protein N-like isoform X3 [Cucurbita moschata]	[more]
XP_022946582.1	4.01e-30	79.22	TMV resistance protein N-like isoform X2 [Cucurbita moschata]	[more]
KAG6598998.1	4.02e-30	79.22	Disease resistance protein RUN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946581.1	4.02e-30	79.22	TMV resistance protein N-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG11g07340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3A0	1.26e-34	86.08	TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450406 PE=4...	[more]
A0A6J1G4A0	1.94e-30	79.22	TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G440	1.94e-30	79.22	TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G421	1.95e-30	79.22	TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G361	8.06e-29	77.33	TMV resistance protein N-like OS=Cucurbita moschata OX=3662 GN=LOC111450404 PE=4...	[more]

BLAST of Cp4.1LG11g07340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19500.1	1.6e-05	39.68	nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP bindin...	[more]
AT4G19500.2	1.6e-05	39.68	nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP bindin...	[more]
AT5G17680.1	3.0e-04	29.69	disease resistance protein (TIR-NBS-LRR class), putative	[more]
AT5G22690.1	8.6e-04	40.91	Disease resistance protein (TIR-NBS-LRR class) family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044974	Disease resistance protein, plants	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 2..84
None	No IPR available	PANTHER	PTHR11017:SF434	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 2..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07340.1	Cp4.1LG11g07340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity