Cp4.1LG11g07320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g07320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor PRE6-like
Location	Cp4.1LG11: 6037674 .. 6038776 (+)
RNA-Seq Expression	Cp4.1LG11g07320
Synteny	Cp4.1LG11g07320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCCGAAGATCCTCGCGTTCCAGAAACACCTCAGGGGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCGCAATACTCGTTCCCATAAGGTAATTAATAAAAATCCCTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTCTACCGAGCTTATTAACTCTCTCTGCCGACATGTCGGCTTGTGGGTCTCCTTTTGTTTCCCTTCCACCAGCATTGCAGCTGGGGGAGTTTTTGATTTTATACCCCAAATTCTCCCCCCTCCCTTACTAACTATCTGATGAAAGTCCCACCTCGGTTAGTTTAGGGAATAATCATGGGTTTATAAACAAAGAATACTCTCTTCACTAGTGTGAGGCCTTGTAAGGAAGCTCAAAGTGAACAATATCATACCATTGTGGAGAGTCGTGTTCGTTTAACACATATGACTCGATGACTAAACTAATCTTAGTAACCCAATTCGGTCATATGATTCGATTCAGTTTGCAAATTGACATGTTATTGGTCGAGTCATCACTAATTCGAAAATAGGGTTACAATTTAACCTAACCCAACTCTATTTTTGAAAAGATTAAGGTTATAATCCTATTTTCGGACCAGTAGGGTTGACTCCTGATTTCATTGATCAAAATTCAACCTAACCCAACTCCATTTTTGAAAAGATTAAGGTTATAAAACATATATTTGAAATTTAAGAGATTTTAGTTATTAATATAATATATATTGCAAATAAATATCGACAACTCAACAATACCGAGCTTGAGAGTTAAGTTGAGTTGTGAACTCTATTCAAGTTGTTCGGGTCACTAATTGAACTTAACCCAATCAACCCGAATACACTCTTGTATATTGAATAGTTTCGATTAATTTAAATCGAAAACTCGTAACGTTATTTGATTTGATTTATTGGTATAGGTATCGGCTTCAAAAGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGCTTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA

mRNA sequence

ATGTCTAGCCGAAGATCCTCGCGTTCCAGAAACACCTCAGGGGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCGCAATACTCGTTCCCATAAGGTATCGGCTTCAAAAGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGCTTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA

Coding sequence (CDS)

ATGTCTAGCCGAAGATCCTCGCGTTCCAGAAACACCTCAGGGGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCGCAATACTCGTTCCCATAAGGTATCGGCTTCAAAAGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGCTTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA

Protein sequence

MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM

Homology

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRR SRSR +  ++I+D+QISDLVSKLQ L+PE R   + +V +S+VLQETCNYIR+L
Sbjct: 1  MSSRR-SRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          H+EVDDLSERLS+LLA ++  SA+AAIIRSL M
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRR SRSR +  ++I+D+QISDLVSKLQ L+PE R   + +V +S+VLQETCNYIR+L
Sbjct: 1  MSSRR-SRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          H+EVDDLSERLS+LLA ++  SA+AAIIRSL M
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.5e-23
Identity = 64/93 (68.82%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSG-AQISDDQISDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIR 60
          MS RR SRSR +SG ++IS+DQI+DL+ KLQ+L+PE+R++ RS KVSA++VLQ+TCNYIR
Sbjct: 1  MSGRR-SRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NLHREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          NLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Sbjct: 61 NLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.5e-23
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRN 60
          MS+RRS ++ N S  +ISDDQ+ DLVSKL++ +PEI    RS KVSASKVLQETCNYIR 
Sbjct: 1  MSNRRSRQTSNAS--RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRK 60

Query: 61 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Sbjct: 61 LHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: XP_023546056.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (433), Expect = 2.40e-53
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          HREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Sbjct: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: XP_022946595.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcription factor PRE6-like [Cucurbita maxima] >XP_022999785.1 transcription factor PRE6-like [Cucurbita maxima] >KAG6599062.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030000.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169 bits (429), Expect = 9.78e-53
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSRN+SGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          HREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Sbjct: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: XP_038886241.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 154 bits (388), Expect = 1.87e-46
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQ-ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIR 60
          MSSRRSSRSRN+SGA  ISDDQISDLVSKLQRLIPE+RN R SHKVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          NLHREVDDLSERLSQLLA+TENDSAEAAIIRSLFM
Sbjct: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 95

[Close]

BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: XP_008465587.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcription factor PRE6-like [Cucumis melo var. makuwa] >TYK00039.1 transcription factor PRE6-like [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 3.73e-44
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN+S +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: XP_004146747.1 (transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa_003742 [Cucumis sativus])

HSP 1 Score: 146 bits (368), Expect = 2.16e-43
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN++ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy TrEMBL
Match: A0A6J1KGK3 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 4.74e-53
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSRN+SGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          HREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Sbjct: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy TrEMBL
Match: A0A6J1G4C0 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 4.74e-53
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSRN+SGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRNSSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          HREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Sbjct: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy TrEMBL
Match: A0A5D3BPI2 (Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00850 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 1.81e-44
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN+S +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy TrEMBL
Match: A0A1S3CPL2 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 1.81e-44
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN+S +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of Cp4.1LG11g07320 vs. ExPASy TrEMBL
Match: A0A0A0KDL6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 1.05e-43
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN++ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of Cp4.1LG11g07320 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 136.7 bits (343), Expect = 9.3e-33
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of Cp4.1LG11g07320 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-24
Identity = 64/93 (68.82%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSG-AQISDDQISDLVSKLQRLIPEIRNT-RSHKVSASKVLQETCNYIR 60
          MS RR SRSR +SG ++IS+DQI+DL+ KLQ+L+PE+R++ RS KVSA++VLQ+TCNYIR
Sbjct: 1  MSGRR-SRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NLHREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          NLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Sbjct: 61 NLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]

BLAST of Cp4.1LG11g07320 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-24
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRN 60
          MS+RRS ++ N S  +ISDDQ+ DLVSKL++ +PEI    RS KVSASKVLQETCNYIR 
Sbjct: 1  MSNRRSRQTSNAS--RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRK 60

Query: 61 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Sbjct: 61 LHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Cp4.1LG11g07320 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 3  SRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRNLH 62
          S R SRSR T  + I+D+QI+DLV +L RL+PE+  N RS KVSAS+VLQETC+YIRNL 
Sbjct: 2  SSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLS 61

Query: 63 REVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          +EVDDLSERLSQLL +T  DSA+AA+IRSL M
Sbjct: 62 KEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]

BLAST of Cp4.1LG11g07320 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRN 60
          MS+RRS +S  +S  +ISD+Q+ DLVSKL++++PEI +  RS K SASKVLQETCNYIRN
Sbjct: 1  MSNRRSRQS--SSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRN 60

Query: 61 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          L+REVD+LSERLSQLL + + DS EAA+IRSL M
Sbjct: 61 LNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.3e-31	81.32	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	1.0e-23	66.67	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	1.0e-23	66.67	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9CA64	6.5e-23	68.82	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q9LJX1	6.5e-23	67.02	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]

BLAST of Cp4.1LG11g07320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546056.1	2.40e-53	100.00	transcription factor PRE6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946595.1	9.78e-53	98.92	transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcriptio...	[more]
XP_038886241.1	1.87e-46	92.63	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_008465587.1	3.73e-44	87.50	PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcrip...	[more]
XP_004146747.1	2.16e-43	86.46	transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa...	[more]

BLAST of Cp4.1LG11g07320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGK3	4.74e-53	98.92	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 ...	[more]
A0A6J1G4C0	4.74e-53	98.92	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=...	[more]
A0A5D3BPI2	1.81e-44	87.50	Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CPL2	1.81e-44	87.50	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1	[more]
A0A0A0KDL6	1.05e-43	86.46	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 S...	[more]

BLAST of Cp4.1LG11g07320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	9.3e-33	81.32	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	4.6e-24	68.82	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G28857.1	4.6e-24	67.02	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	1.3e-23	67.39	BANQUO 3	[more]
AT5G39860.1	1.3e-23	65.96	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..77
None	No IPR available	PANTHER	PTHR46446:SF20	BNAA07G09310D PROTEIN	coord: 1..92
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 16..76 e-value: 2.19155E-21 score: 77.7287
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 20..61 e-value: 3.1E-5 score: 23.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 6..60 score: 10.435723
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 19..89 e-value: 3.1E-9 score: 38.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 20..77
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07320.1	Cp4.1LG11g07320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity