Cp4.1LG11g07290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g07290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	single-stranded DNA-binding protein WHY1, chloroplastic-like
Location	Cp4.1LG11: 6021650 .. 6025315 (-)
RNA-Seq Expression	Cp4.1LG11g07290
Synteny	Cp4.1LG11g07290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGGCGGTGGCGGATAGCTGGTGCCGGCTGAATGGGGAGTCGCTCACTGAGCTGCAAAACCGAGTAGGATGATGGCGTAGTCGGTTTGGTTACGAACAAATTTGGCTCAATCGTCTTCCCCTAGCCTTAAACGAACAAGGAATCACATTCTTTTGGGCAATAAACATCTCGAGAGTACACAAAAAGAATCTAGCAGCAAGTAGAACATTGAAGGAGTTCGAAACGTTAAGGGGCTGGAGGACTACACTCGTTTGTGAGGGCTCGCTAATTAAGAACATGGGCTTATAAATAAGGAATACAGGAGCCTTATAAATAGGTTCTACTTTTACGCTTATCCATAGAACATTTTGGTTACGAAAGGATATAAAACTTTGTAGGGCCATGAGCTTTGGCGGTGAAAAAATGGCGCTCTAACTCCTGCCGGTTGTCTCTCTAATCCTCTGCGAAGACGAAGCCGAAACCATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGTCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCCGGCTCTCAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGGTACTTCTTTATCCCTTTCCTTTCAAGTTTTTTCGGGAAGAACTTCGTGTATCCTGTAGTATTGATGCTATTTGGAAATTTTGGTTCATGTTGGAAGGAAAATGTAGTATATAGCTCCGTTTGTGACTGATTTTGTTTAACCGTGGATGGACTGAATTATTATGACCTTGTTTTCTTTTTGCTTATCTCCTATTCCTCAAATTTTACTGGATTACTTAGAACTGATTCAATTTCAAGGAGCTCTCCAAATCCAGGGGCATTTTTCTTGAAATTCTTTGTTTATTCCTTGTTAGTTGTTTTGATTTCTCGGGTTCTGAAGTGTTTATGGTTTGGCTTGTTTGTAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATGTATGTTTGACTTGAATTCTGAGCTTTAAATCATGATAGGCTGTTTTTCCTCGTTAGTTCTTTCTTTATGGTTATTAATCTTTTAAAATTTGTCAGTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAGTTTGCCCCAGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTTCTAAAAAACAAGCTGATATTTAACTTAGCTTAAGTGAAATTCTAGGTTAATGCTGATTACTATTCCACTGGTTTCATATTGGGCATCTGTAGTATCATTTCCATGATGGAGTCGATGAGATTGAAAATACCAAGACATGTTTGGGGAGCTGTGTTCATCATTCGTTTTTCTAATTATTTTTAAGAACAAAAATAGATGCTGTCTTGTAAAGATTAAATCATTGTGCAATTGAAATCACTAAATCAGACAGTGAAGAACTTTTCGTGAAAACCATTCCCTTGTCTTTATTGTTTATAATAATTTTCTGATATGTACCAATTAGATTATAGTTTGTTTTGTATGTAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGCGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGGTACCATCTAAACTTGTACTTTTAGAAACTACGACTCTCTACAATGGTATGATATTGTCCACTTTGTGCATAAGCTCTCATGGTTTTGCTTTTGGAATCCCTTAGTTAGTCGATGTGTGACTCCTCTCCCAACAATCCTCAACAATCCTCCCCTCGAACAAAGTACACTATAGAGCTTCCCCTGAGGCTTATGGAGCCCTCGAATAGCCTCTCCTTAATCGAGGCTAGACTGCTTCTCTAGAGCCCTTGAACAAAGTACATCCTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAGCCTCACAACTTCTTTGTTCGACACTTGAGGATTCTATTGACATGGCTCTTATACCATGTTAGAAACCATGACTCTCCAAAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGTTTTTGGTTTCCCTGAAAGGCTTCATACCAACGGAGATAGTATTCGTTACTTATAAACCCATAATCAACCCCTTAATGAACCGATGTGAGACTCCTCTTCCAACAATCCTCAACATATACCATTCGTTGAGTCGTATTCATGTTTAGGTATTGTGCATCTTTGGTTTCCTCAAATATTTTGCTCTTCTTAGATCTCAAAATTGCTTGATTTTAACATTGAAAACAATGACGCATCGATCTTTTTCGTAGCACAAACCACCCCCTTCTTGAGTGTACATGCTGACCATTTTCTTTTTAATAGCCAAATATTTAGGTCGTAAGTTGTTTGTAAACAAAGGTCTGCAGGTTTGAAAACATAGTATGTTATGATAACAAGAGACAAAATATTTGTTCTACAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAACCTCAGTAAGTCTTGTGTTGAAACCTTCATGATCCATTGAGGTTGAATGTAAACTGCAATGATGCTAGAGAAAGTCTTTATTTTATCCCCTTAACTTTTCTGTTCTATTTTGTTGCACAAGGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGGTAAAGTTCTTTCCAGTTTACATGCTTATCTTTCTTCTCAAGCTTGTTTGATTCGATTAGGACGCATGATCGAGACCATAGAGTGATAAACTGGCGTGTATGATTTGGGTCACTTCGAAACTGCAAAATTTCAGAAAAATAACTACTAAACAACTATAATTGAATTGGTTCGGTTGGTTTAAGAAACACATATTTGTCTGGTTCAGTTTCATTAAGTTTAAAATTGACAATTAGTCGGCTGATTCAGTTTTATCACTTTGTGTTTGTGTAACGGCTCAAGCTTATCGTTAGCAGATATGGATTGTGAGTTCCCACGTCGGTTGATGATCCCTCTACTCTTACAAATTTTGTGATTATAATTGGTAGACTGTATGTTTATTCATTATTTGTGCAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACAAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAGTCTCTACTTGGATGGAGACGATTGTTGTTGTGCTCGTAATCTTTCACAGATTGCTATTCACTCTCTTCTTTATCTCGTTTTGCATATTAGTTTTAAATATTATTTTGGGAGTTACTGAGTTTTTGCACCCAAATATTGGGTTTACTTAATTCTCCCTTCTTAATTTATTAGCCATTTTAATATTTGAATGTCATAAAAAAATATATTTTTTATTTTAATTTTAGGCTCAATTTTATATATAAAAAATAGTTACTTCTAC

mRNA sequence

TGTTGGCGGTGGCGGATAGCTGGTGCCGGCTGAATGGGGAGTCGCTCACTGAGCTGCAAAACCGAGTAGGATGATGGCGTAGTCGGTTTGGTTACGAACAAATTTGGCTCAATCGTCTTCCCCTAGCCTTAAACGAACAAGGAATCACATTCTTTTGGGCAATAAACATCTCGAGAGTACACAAAAAGAATCTAGCAGCAAGTAGAACATTGAAGGAGTTCGAAACGTTAAGGGGCTGGAGGACTACACTCGTTTGTGAGGGCTCGCTAATTAAGAACATGGGCTTATAAATAAGGAATACAGGAGCCTTATAAATAGGTTCTACTTTTACGCTTATCCATAGAACATTTTGGTTACGAAAGGATATAAAACTTTGTAGGGCCATGAGCTTTGGCGGTGAAAAAATGGCGCTCTAACTCCTGCCGGTTGTCTCTCTAATCCTCTGCGAAGACGAAGCCGAAACCATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGTCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCCGGCTCTCAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAGTTTGCCCCAGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGCGAATCTTGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACAAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAGTCTCTACTTGGATGGAGACGATTGTTGTTGTGCTCGTAATCTTTCACAGATTGCTATTCACTCTCTTCTTTATCTCGTTTTGCATATTAGTTTTAAATATTATTTTGGGAGTTACTGAGTTTTTGCACCCAAATATTGGGTTTACTTAATTCTCCCTTCTTAATTTATTAGCCATTTTAATATTTGAATGTCATAAAAAAATATATTTTTTATTTTAATTTTAGGCTCAATTTTATATATAAAAAATAGTTACTTCTAC

Coding sequence (CDS)

ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGTCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCCGGCTCTCAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAGTTTGCCCCAGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGCGAATCTTGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACAAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAG

Protein sequence

MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSMTRTEDNRRANDANPRYGGDFEWSR

Homology

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy Swiss-Prot
Match: Q66GR6 (Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY3 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-60
Identity = 123/210 (58.57%), Postives = 145/210 (69.05%), Query Frame = 0


Query: 64  FESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISR 123
           FE     DS SSQ     A    PRF+VGHSIYKGKAALT+EPR PEF  L+SGAFK+++
Sbjct: 64  FEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTK 123

Query: 124 EGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---------------- 183
           EGF+LLQFAPAAGVRQYDWSRKQVFSLSVTE+G+LV+LGPRESC                
Sbjct: 124 EGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGK 183

Query: 184 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDES+YIPITKAE+ VL+ AF F+LPHL+GW 
Sbjct: 184 VRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWS 243

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy Swiss-Prot
Match: Q9M9S3 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 9.9e-60
Identity = 119/210 (56.67%), Postives = 144/210 (68.57%), Query Frame = 0


Query: 69  QTDSFSSQ------TRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKIS 128
           QTD F  Q      +    A  LP RF+VGHSIYKGKAALTV+PR PEF  LDSGAFK+S
Sbjct: 55  QTDYFEKQRFGDSSSSPSPAEGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLS 114

Query: 129 REGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------------- 188
           ++GF+LLQFAP+AGVRQYDWS+KQVFSLSVTE+G+LV+LGPRESC               
Sbjct: 115 KDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGK 174

Query: 189 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDESIYIPIT+AE+ VL+ AF F+LP+L+GWH
Sbjct: 175 VRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWH 234

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy Swiss-Prot
Match: Q9LL85 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=4113 GN=WHY1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.3e-55
Identity = 114/216 (52.78%), Postives = 140/216 (64.81%), Query Frame = 0


Query: 57  TQQHQAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 116
           T +H   FE   Q      Q +     A  P+ FVG+SIYKGKAALTVEPR PEF+PLDS
Sbjct: 64  TCRHSDYFEPQQQQQQQQQQPQ----GASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDS 123

Query: 117 GAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------- 176
           GAFK+SREG V+LQFAPAAGVRQYDWSRKQVFSLSVTE+GS+++LG ++SC         
Sbjct: 124 GAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKG 183

Query: 177 ---------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILP 236
                                      VQNKL N+DE+IYIP+TKAE+ VLV AF F++P
Sbjct: 184 RSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMP 243

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy Swiss-Prot
Match: B2LXS7 (Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=WHY1 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.8e-43
Identity = 90/185 (48.65%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 88  RFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQV 147
           R F  +SIYKGKAAL+ +PRPP F PLDSGA+K+++EGFVLLQFAPA   RQYDW+RKQV
Sbjct: 85  RVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQV 144

Query: 148 FSLSVTELGSLVALGPRESC------------------------------------VQNK 207
           FSLSV E+G+L+ LGP +SC                                    VQN+
Sbjct: 145 FSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNR 204

Query: 208 LTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSMTRTEDNRRANDANPRYGGD 237
           L NVDESIYIPITK E+ V+V  F +I+PHLMGW    +S+ + E++R    + P+   +
Sbjct: 205 LINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWSTFVSSI-KPEESRPY--SRPQSTSE 264

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy Swiss-Prot
Match: Q8VYF7 (Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WHY2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-26
Identity = 67/195 (34.36%), Postives = 99/195 (50.77%), Query Frame = 0


Query: 80  GAAAALPP-RFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVR 139
           G  AA P  R F  +SI+KGKAAL+VEP  P FT +DSG  +I R G +++ F PA G R
Sbjct: 44  GKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGER 103

Query: 140 QYDWSRKQVFSLSVTELGSLVALGPRES-------------------------------- 199
           +YDW +KQ F+LS TE+GSL+++G ++S                                
Sbjct: 104 KYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGY 163

Query: 200 ----CVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSM-TRTEDNRRA 237
                V N +   ++   +P+TKAE+ V+  AF F LPH+MGW+ +   + T    +R  
Sbjct: 164 FISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRLTGHVNTEALPSRNV 223

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: XP_023546045.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 451 bits (1160), Expect = 5.64e-159
Identity = 236/272 (86.76%), Postives = 236/272 (86.76%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60

Query: 61  QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120
           QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK
Sbjct: 61  QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120

Query: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------- 180
           ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC             
Sbjct: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDE 180

Query: 181 -----------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 236
                                  VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: XP_022946771.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita moschata] >KAG6599060.1 Single-stranded DNA-binding protein WHY3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 446 bits (1148), Expect = 3.80e-157
Identity = 234/272 (86.03%), Postives = 234/272 (86.03%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60

Query: 61  QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120
           QAAFESG QTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK
Sbjct: 61  QAAFESGFQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120

Query: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------- 180
           ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC             
Sbjct: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDE 180

Query: 181 -----------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 236
                                  VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKMLKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: KAG7029998.1 (Single-stranded DNA-binding protein WHY1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446 bits (1148), Expect = 3.80e-157
Identity = 234/272 (86.03%), Postives = 234/272 (86.03%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60

Query: 61  QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120
           QAAFESG QTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK
Sbjct: 61  QAAFESGLQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120

Query: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------- 180
           ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC             
Sbjct: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDE 180

Query: 181 -----------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 236
                                  VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: XP_022999747.1 (single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 427 bits (1097), Expect = 2.24e-149
Identity = 225/272 (82.72%), Postives = 227/272 (83.46%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSSLL PLIPELSPETSSNRRLCRLNSFRPLLT +T PK SPKCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSLLLPLIPELSPETSSNRRLCRLNSFRPLLTFTTAPKFSPKCQYSWNTQQH 60

Query: 61  QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120
           QAAFESGS T SF SQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK
Sbjct: 61  QAAFESGSPTGSFPSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120

Query: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------- 180
           ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC             
Sbjct: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDE 180

Query: 181 -----------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 236
                                  VQN LTNVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGRFFNLSVQNNLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

[Close]

BLAST of Cp4.1LG11g07290 vs. NCBI nr
Match: XP_008456468.1 (PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis melo] >KAA0036450.1 single-stranded DNA-binding protein WHY1 [Cucumis melo var. makuwa] >TYK00036.1 single-stranded DNA-binding protein WHY1 [Cucumis melo var. makuwa])

HSP 1 Score: 380 bits (977), Expect = 4.38e-131
Identity = 203/273 (74.36%), Postives = 214/273 (78.39%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQ LSSSLLP   PELSPET SN RLC LN  RPLLTL+TT K SPKCQYSWNT QH
Sbjct: 1   MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQH 60

Query: 61  Q-AAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120
           Q ++FE  SQTDSFS Q+RAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF
Sbjct: 61  QQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120

Query: 121 KISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------ 180
           KISREG V+LQFAPAAGVRQYDWSRKQVFSLSVTELGSL+ALGPRE+C            
Sbjct: 121 KISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSD 180

Query: 181 ------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLM 236
                                   VQNKL NVDESIYIPITKAEYTVLVEAFKFILPHLM
Sbjct: 181 EGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLM 240

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy TrEMBL
Match: A0A6J1G4J7 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111450739 PE=3 SV=1)

HSP 1 Score: 446 bits (1148), Expect = 1.84e-157
Identity = 234/272 (86.03%), Postives = 234/272 (86.03%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60

Query: 61  QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120
           QAAFESG QTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK
Sbjct: 61  QAAFESGFQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120

Query: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------- 180
           ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC             
Sbjct: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDE 180

Query: 181 -----------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 236
                                  VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKMLKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy TrEMBL
Match: A0A6J1KBN5 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494004 PE=3 SV=1)

HSP 1 Score: 427 bits (1097), Expect = 1.09e-149
Identity = 225/272 (82.72%), Postives = 227/272 (83.46%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSSLL PLIPELSPETSSNRRLCRLNSFRPLLT +T PK SPKCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSLLLPLIPELSPETSSNRRLCRLNSFRPLLTFTTAPKFSPKCQYSWNTQQH 60

Query: 61  QAAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120
           QAAFESGS T SF SQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK
Sbjct: 61  QAAFESGSPTGSFPSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFK 120

Query: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------- 180
           ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC             
Sbjct: 121 ISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDE 180

Query: 181 -----------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 236
                                  VQN LTNVDESIYIPITKAEYTVLVEAFKFILPHLMG
Sbjct: 181 GKVRKILKVEPLPDGSGRFFNLSVQNNLTNVDESIYIPITKAEYTVLVEAFKFILPHLMG 240

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy TrEMBL
Match: A0A5D3BP35 (Single-stranded DNA-binding protein WHY1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00810 PE=3 SV=1)

HSP 1 Score: 380 bits (977), Expect = 2.12e-131
Identity = 203/273 (74.36%), Postives = 214/273 (78.39%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQ LSSSLLP   PELSPET SN RLC LN  RPLLTL+TT K SPKCQYSWNT QH
Sbjct: 1   MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQH 60

Query: 61  Q-AAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120
           Q ++FE  SQTDSFS Q+RAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF
Sbjct: 61  QQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120

Query: 121 KISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------ 180
           KISREG V+LQFAPAAGVRQYDWSRKQVFSLSVTELGSL+ALGPRE+C            
Sbjct: 121 KISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSD 180

Query: 181 ------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLM 236
                                   VQNKL NVDESIYIPITKAEYTVLVEAFKFILPHLM
Sbjct: 181 EGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLM 240

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy TrEMBL
Match: A0A1S3C3B0 (single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496412 PE=3 SV=1)

HSP 1 Score: 380 bits (977), Expect = 2.12e-131
Identity = 203/273 (74.36%), Postives = 214/273 (78.39%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQ LSSSLLP   PELSPET SN RLC LN  RPLLTL+TT K SPKCQYSWNT QH
Sbjct: 1   MLRLQWLSSSLLPTFNPELSPETLSNPRLCSLNFRRPLLTLTTTRKPSPKCQYSWNTHQH 60

Query: 61  Q-AAFESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120
           Q ++FE  SQTDSFS Q+RAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF
Sbjct: 61  QQSSFEPASQTDSFSPQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAF 120

Query: 121 KISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC------------ 180
           KISREG V+LQFAPAAGVRQYDWSRKQVFSLSVTELGSL+ALGPRE+C            
Sbjct: 121 KISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKGKSD 180

Query: 181 ------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLM 236
                                   VQNKL NVDESIYIPITKAEYTVLVEAFKFILPHLM
Sbjct: 181 EGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLM 240

[Close]

BLAST of Cp4.1LG11g07290 vs. ExPASy TrEMBL
Match: A0A0A0KG25 (WHY1 OS=Cucumis sativus OX=3659 GN=Csa_6G404240 PE=2 SV=1)

HSP 1 Score: 368 bits (945), Expect = 1.75e-126
Identity = 199/276 (72.10%), Postives = 210/276 (76.09%), Query Frame = 0


Query: 1   MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQH 60
           MLRLQCLSSS LP   PELSPET SN RLC LN  RPL TL+TT K + KCQYSWNTQQH
Sbjct: 1   MLRLQCLSSSFLPTFNPELSPETLSNPRLCTLNFSRPLPTLTTTRKPTSKCQYSWNTQQH 60

Query: 61  Q-AAFESGSQTDSFSSQTRAGAAAA---LPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 120
           Q +AFE    TDS S Q+RAGAAAA   LPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS
Sbjct: 61  QQSAFEPAPHTDSLSPQSRAGAAAAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDS 120

Query: 121 GAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------- 180
           GAFKISREG V+LQFAPAAGVRQYDWSRKQVFSLSVTELGSL+ALGPRE+C         
Sbjct: 121 GAFKISREGLVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPREACEFFHDPYKG 180

Query: 181 ---------------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILP 236
                                      VQNKL NVDESIYIPITKAEYTVLVEAFKFILP
Sbjct: 181 KSDEGKVRKILKVEPLPDGSGHFFNLTVQNKLINVDESIYIPITKAEYTVLVEAFKFILP 240

[Close]

BLAST of Cp4.1LG11g07290 vs. TAIR 10
Match: AT2G02740.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 235.0 bits (598), Expect = 6.4e-62
Identity = 123/209 (58.85%), Postives = 145/209 (69.38%), Query Frame = 0


Query: 64  FESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISR 123
           FE     DS SSQ     A    PRF+VGHSIYKGKAALT+EPR PEF  L+SGAFK+++
Sbjct: 64  FEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTK 123

Query: 124 EGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---------------- 183
           EGF+LLQFAPAAGVRQYDWSRKQVFSLSVTE+G+LV+LGPRESC                
Sbjct: 124 EGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGDEGKV 183

Query: 184 --------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHA 237
                               VQNKL NVDES+YIPITKAE+ VL+ AF F+LPHL+GW A
Sbjct: 184 RKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWSA 243

[Close]

BLAST of Cp4.1LG11g07290 vs. TAIR 10
Match: AT2G02740.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 234.6 bits (597), Expect = 8.3e-62
Identity = 123/210 (58.57%), Postives = 145/210 (69.05%), Query Frame = 0


Query: 64  FESGSQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISR 123
           FE     DS SSQ     A    PRF+VGHSIYKGKAALT+EPR PEF  L+SGAFK+++
Sbjct: 64  FEKQRFGDSSSSQN----AEVSSPRFYVGHSIYKGKAALTIEPRAPEFVALESGAFKLTK 123

Query: 124 EGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC---------------- 183
           EGF+LLQFAPAAGVRQYDWSRKQVFSLSVTE+G+LV+LGPRESC                
Sbjct: 124 EGFLLLQFAPAAGVRQYDWSRKQVFSLSVTEIGNLVSLGPRESCEFFHDPFKGKGSDEGK 183

Query: 184 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDES+YIPITKAE+ VL+ AF F+LPHL+GW 
Sbjct: 184 VRKVLKVEPLPDGSGRFFNLSVQNKLLNVDESVYIPITKAEFAVLISAFNFVLPHLIGWS 243

[Close]

BLAST of Cp4.1LG11g07290 vs. TAIR 10
Match: AT1G14410.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 231.5 bits (589), Expect = 7.0e-61
Identity = 119/210 (56.67%), Postives = 144/210 (68.57%), Query Frame = 0


Query: 69  QTDSFSSQ------TRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKIS 128
           QTD F  Q      +    A  LP RF+VGHSIYKGKAALTV+PR PEF  LDSGAFK+S
Sbjct: 55  QTDYFEKQRFGDSSSSPSPAEGLPARFYVGHSIYKGKAALTVDPRAPEFVALDSGAFKLS 114

Query: 129 REGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESC--------------- 188
           ++GF+LLQFAP+AGVRQYDWS+KQVFSLSVTE+G+LV+LGPRESC               
Sbjct: 115 KDGFLLLQFAPSAGVRQYDWSKKQVFSLSVTEIGTLVSLGPRESCEFFHDPFKGKSDEGK 174

Query: 189 ---------------------VQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWH 237
                                VQNKL NVDESIYIPIT+AE+ VL+ AF F+LP+L+GWH
Sbjct: 175 VRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVLPYLIGWH 234

[Close]

BLAST of Cp4.1LG11g07290 vs. TAIR 10
Match: AT1G71260.1 (WHIRLY 2 )

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-27
Identity = 67/195 (34.36%), Postives = 99/195 (50.77%), Query Frame = 0


Query: 80  GAAAALPP-RFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVR 139
           G  AA P  R F  +SI+KGKAAL+VEP  P FT +DSG  +I R G +++ F PA G R
Sbjct: 44  GKDAAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMPAIGER 103

Query: 140 QYDWSRKQVFSLSVTELGSLVALGPRES-------------------------------- 199
           +YDW +KQ F+LS TE+GSL+++G ++S                                
Sbjct: 104 KYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKSLSVKPHADGSGY 163

Query: 200 ----CVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSM-TRTEDNRRA 237
                V N +   ++   +P+TKAE+ V+  AF F LPH+MGW+ +   + T    +R  
Sbjct: 164 FISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGWNRLTGHVNTEALPSRNV 223

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q66GR6	1.2e-60	58.57	Single-stranded DNA-binding protein WHY3, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q9M9S3	9.9e-60	56.67	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q9LL85	3.3e-55	52.78	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Solanum tuberosum OX=...	[more]
B2LXS7	3.8e-43	48.65	Single-stranded DNA-binding protein WHY1, chloroplastic OS=Zea mays OX=4577 GN=W...	[more]
Q8VYF7	2.5e-26	34.36	Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana ...	[more]

BLAST of Cp4.1LG11g07290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546045.1	5.64e-159	86.76	single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022946771.1	3.80e-157	86.03	single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita moschata...	[more]
KAG7029998.1	3.80e-157	86.03	Single-stranded DNA-binding protein WHY1, chloroplastic [Cucurbita argyrosperma ...	[more]
XP_022999747.1	2.24e-149	82.72	single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucurbita maxima]	[more]
XP_008456468.1	4.38e-131	74.36	PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like [Cucumis...	[more]

BLAST of Cp4.1LG11g07290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4J7	1.84e-157	86.03	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1KBN5	1.09e-149	82.72	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A5D3BP35	2.12e-131	74.36	Single-stranded DNA-binding protein WHY1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3C3B0	2.12e-131	74.36	single-stranded DNA-binding protein WHY1, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A0A0KG25	1.75e-126	72.10	WHY1 OS=Cucumis sativus OX=3659 GN=Csa_6G404240 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g07290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02740.2	6.4e-62	58.85	ssDNA-binding transcriptional regulator	[more]
AT2G02740.1	8.3e-62	58.57	ssDNA-binding transcriptional regulator	[more]
AT1G14410.1	7.0e-61	56.67	ssDNA-binding transcriptional regulator	[more]
AT1G71260.1	1.8e-27	34.36	WHIRLY 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10	Transcriptional Coactivator Pc4; Chain A	coord: 81..167 e-value: 7.1E-38 score: 132.1 coord: 168..223 e-value: 2.7E-13 score: 52.0
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	54447	ssDNA-binding transcriptional regulator domain	coord: 87..236
IPR013742	Whirly transcription factor	PFAM	PF08536	Whirly	coord: 95..168 e-value: 8.5E-30 score: 103.4
IPR013742	Whirly transcription factor	PANTHER	PTHR31745	SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL	coord: 168..236 coord: 69..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..236
None	No IPR available	PANTHER	PTHR31745:SF3	SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC	coord: 168..236 coord: 69..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07290.1	Cp4.1LG11g07290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding