Cp4.1LG11g07130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g07130
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	Cp4.1LG11: 5215137 .. 5215613 (-)
RNA-Seq Expression	Cp4.1LG11g07130
Synteny	Cp4.1LG11g07130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA

mRNA sequence

ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA

Coding sequence (CDS)

ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA

Protein sequence

MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAEVCALITI

Homology

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.8e-34
Identity = 78/140 (55.71%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 19  HRCHRHPFPIISASLSIQ-----RRHIATALALVAGLQAAAPPALAQ-TWGTHSFIKERY 78
           HR    PF ++  +   Q     RR   T+L     +  A   ALAQ  WGT SFIKE+Y
Sbjct: 20  HRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKY 79

Query: 79  FEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQ 138
           F PGLS E+A ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM++LP+
Sbjct: 80  FMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPE 139

Query: 139 ARQNEYVKTANELVDNMAEV 153
           +R+N+YV+ ANELV+NM+E+
Sbjct: 140 SRRNDYVQAANELVENMSEL 159

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.1e-05
Identity = 23/85 (27.06%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +KER++   L   EAVAR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 128 SVLPQARQNEYVKTANELVDNMAEV 153
           +  P+  +    +   +L   + ++
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDL 182

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.1e-05
Identity = 22/85 (25.88%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +KER++   L   EA AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 128 SVLPQARQNEYVKTANELVDNMAEV 153
           +  P+  +    +   +L   + ++
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDL 186

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04
Identity = 22/82 (26.83%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 128 SVLPQARQNEYVKTANELVDNM 150
           S  P+  +        +L D +
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTI 190

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04
Identity = 20/65 (30.77%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           ++ER++   L   EA AR +++A+ + +++ ++E   W +V   +RL+++YL  DLKT +
Sbjct: 102 LRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVI 161

Query: 128 SVLPQ 133
           +  P+
Sbjct: 162 NSKPK 166

[Close]

BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: XP_023545788.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298 bits (764), Expect = 2.28e-101
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ 60
           MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ 60

Query: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120
           TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS
Sbjct: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120

Query: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           QDLKTAMSVLPQARQNEYVKTANELVDNMAE+
Sbjct: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEL 152

[Close]

BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: KAG6598987.1 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011082.1 Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295 bits (755), Expect = 5.37e-100
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ 60
           MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSI RRHIATALALV GLQAAAPPALAQ
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSISRRHIATALALVVGLQAAAPPALAQ 60

Query: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120
           TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS
Sbjct: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120

Query: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           QDLKTAMSVLPQARQNEYVKTANELVDNMAE+
Sbjct: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEL 152

[Close]

BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 295 bits (755), Expect = 5.37e-100
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ 60
           MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSI RRHIATALALV GLQAAAPPALAQ
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPPALAQ 60

Query: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120
           TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS
Sbjct: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120

Query: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           QDLKTAMSVLPQARQNEYVKTANELVDNMAE+
Sbjct: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEL 152

[Close]

BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 295 bits (754), Expect = 7.62e-100
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ 60
           MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALV GLQAAAPPALAQ
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPPALAQ 60

Query: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120
           TWGTHSFIKERYF+PGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS
Sbjct: 61  TWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120

Query: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           QDLKTAMSVLPQARQN+YVKTANELVDNMAE+
Sbjct: 121 QDLKTAMSVLPQARQNDYVKTANELVDNMAEL 152

[Close]

BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 252 bits (644), Expect = 4.86e-83
Identity = 131/155 (84.52%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MPAFANATTLFSSRIPTPHRC---HRHPFPIISASLSIQRRHIATALALVAGLQAAAPPA 60
           M +FANA TLF SRI TPH+C    RH FPII+ASLSI RRHIATALA V GLQA AP A
Sbjct: 1   MTSFANANTLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQATAPLA 60

Query: 61  LAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSA 120
           LAQ+WGTHSFIKERYFEPGLS EEAVARI+QTAEGLHSIR+MLETMSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           YLSQDLKTAMSVLPQARQN++VKTANELVDNMAE+
Sbjct: 121 YLSQDLKTAMSVLPQARQNDFVKTANELVDNMAEL 155

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 295 bits (755), Expect = 2.60e-100
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ 60
           MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSI RRHIATALALV GLQAAAPPALAQ
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPPALAQ 60

Query: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120
           TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS
Sbjct: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120

Query: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           QDLKTAMSVLPQARQNEYVKTANELVDNMAE+
Sbjct: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEL 152

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 295 bits (754), Expect = 3.69e-100
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQ 60
           MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALV GLQAAAPPALAQ
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPPALAQ 60

Query: 61  TWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120
           TWGTHSFIKERYF+PGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS
Sbjct: 61  TWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLS 120

Query: 121 QDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           QDLKTAMSVLPQARQN+YVKTANELVDNMAE+
Sbjct: 121 QDLKTAMSVLPQARQNDYVKTANELVDNMAEL 152

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 4.94e-76
Identity = 125/156 (80.13%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MPAFANAT--TLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVAGLQAAAP-P 60
           MP  ANA   TLFSSRI TPH+  HR  FP+I+ASL I RRHIAT LALV GLQAA P  
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKS 120
           ALAQ+WGTHSFIKERYFEPGLS EEAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           AYLSQDLKTAM+ LPQAR+N++VKTANELVDNMAE+
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAEL 156

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 231 bits (590), Expect = 3.91e-75
Identity = 122/150 (81.33%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQTW 64
           ANA +TLFSS I TPH+  HR  FPII+ASL I RRHIAT LA+V GLQAA P ALAQ+W
Sbjct: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65

Query: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125

Query: 125 LKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           LKTAM+ LPQARQN++VKTANELVDNMAE+
Sbjct: 126 LKTAMTTLPQARQNDFVKTANELVDNMAEL 155

[Close]

BLAST of Cp4.1LG11g07130 vs. ExPASy TrEMBL
Match: A0A1S3AVQ2 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483197 PE=3 SV=1)

HSP 1 Score: 231 bits (590), Expect = 3.91e-75
Identity = 122/150 (81.33%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQTW 64
           ANA +TLFSS I TPH+  HR  FPII+ASL I RRHIAT LA+V GLQAA P ALAQ+W
Sbjct: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65

Query: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125

Query: 125 LKTAMSVLPQARQNEYVKTANELVDNMAEV 152
           LKTAM+ LPQARQN++VKTANELVDNMAE+
Sbjct: 126 LKTAMTTLPQARQNDFVKTANELVDNMAEL 155

[Close]

BLAST of Cp4.1LG11g07130 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-35
Identity = 79/140 (56.43%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 19  HRCHRHPFPIISASLSIQ-----RRHIATALALVAGLQAAAPPALAQ-TWGTHSFIKERY 78
           HR    PF ++  +   Q     RR   T+L     +  A   ALAQ  WGT SFIKE+Y
Sbjct: 20  HRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKY 79

Query: 79  FEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQ 138
           F PGLS E+A ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM++LP+
Sbjct: 80  FMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPE 139

Query: 139 ARQNEYVKTANELVDNMAEV 153
           +R+N+YV+ ANELV+NM+EV
Sbjct: 140 SRRNDYVQAANELVENMSEV 159

[Close]

BLAST of Cp4.1LG11g07130 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-35
Identity = 78/140 (55.71%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 19  HRCHRHPFPIISASLSIQ-----RRHIATALALVAGLQAAAPPALAQ-TWGTHSFIKERY 78
           HR    PF ++  +   Q     RR   T+L     +  A   ALAQ  WGT SFIKE+Y
Sbjct: 20  HRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKY 79

Query: 79  FEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQ 138
           F PGLS E+A ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM++LP+
Sbjct: 80  FMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPE 139

Query: 139 ARQNEYVKTANELVDNMAEV 153
           +R+N+YV+ ANELV+NM+E+
Sbjct: 140 SRRNDYVQAANELVENMSEL 159

[Close]

BLAST of Cp4.1LG11g07130 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-05
Identity = 22/82 (26.83%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 108 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 167

Query: 128 SVLPQARQNEYVKTANELVDNM 150
           S  P+  +        +L D +
Sbjct: 168 SSKPKDEKKSLKDLTTKLFDTI 189

[Close]

BLAST of Cp4.1LG11g07130 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-05
Identity = 22/82 (26.83%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 128 SVLPQARQNEYVKTANELVDNM 150
           S  P+  +        +L D +
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTI 190

[Close]

BLAST of Cp4.1LG11g07130 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 24/90 (26.67%), Postives = 44/90 (48.89%), Query Frame = 0


Query: 63  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 122
           GT +FIK+  +   +  +  + R+++ A  L ++ D++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 123 LKTAMSVLPQARQNEYVKTANELVDNMAEV 153
               +S      +      AN L DN  ++
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKL 189

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	4.8e-34	55.71	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	2.1e-05	27.06	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q41048	6.1e-05	25.88	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q9XFT3	4.0e-04	26.83	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	4.0e-04	30.77	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]

BLAST of Cp4.1LG11g07130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545788.1	2.28e-101	99.34	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo ...	[more]
KAG6598987.1	5.37e-100	98.03	Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurb...	[more]
XP_022946003.1	5.37e-100	98.03	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_022972860.1	7.62e-100	97.37	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]
XP_038880767.1	4.86e-83	84.52	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]

BLAST of Cp4.1LG11g07130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2K7	2.60e-100	98.03	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	3.69e-100	97.37	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]
A0A0A0L3W3	4.94e-76	80.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A5D3DC39	3.91e-75	81.33	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3AVQ2	3.91e-75	81.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo ...	[more]

BLAST of Cp4.1LG11g07130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.2	1.5e-35	56.43	PsbQ-like 2	[more]
AT1G14150.1	3.4e-35	55.71	PsbQ-like 2	[more]
AT4G21280.1	2.8e-05	26.83	photosystem II subunit QA	[more]
AT4G21280.2	2.8e-05	26.83	photosystem II subunit QA	[more]
AT3G01440.1	2.4e-04	26.67	PsbQ-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 56..151 e-value: 5.4E-23 score: 81.8
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..153
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 40..156 e-value: 1.7E-28 score: 101.5
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 72..151
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07130.1	Cp4.1LG11g07130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity