Cp4.1LG11g05850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g05850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG11: 3511018 .. 3511335 (+)
RNA-Seq Expression	Cp4.1LG11g05850
Synteny	Cp4.1LG11g05850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACTGCCAATCTCAAACCCACAAGAAGGAGAAGGCTAAAGCTTCTTCACCTCCCAAAAAACACCACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGCCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

mRNA sequence

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACTGCCAATCTCAAACCCACAAGAAGGAGAAGGCTAAAGCTTCTTCACCTCCCAAAAAACACCACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGCCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACTGCCAATCTCAAACCCACAAGAAGGAGAAGGCTAAAGCTTCTTCACCTCCCAAAAAACACCACCTCCTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGCCACAACCATGATACCGACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL

Homology

[Close]

BLAST of Cp4.1LG11g05850 vs. NCBI nr
Match: KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (516), Expect = 1.25e-65
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
           MRSIHSFRQRRQATSTANLKPTRRRRLKL+HLPKNTTSSSAISAAATGTTPSPAMHKRLR
Sbjct: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60

Query: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL
Sbjct: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105

[Close]

BLAST of Cp4.1LG11g05850 vs. NCBI nr
Match: KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])

HSP 1 Score: 164 bits (415), Expect = 1.89e-49
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KLLHLPK+T SSS +SA    TTPS AMHKRLR
Sbjct: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHT-SSSTVSATTNRTTPSAAMHKRLR 118

Query: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           NLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 119 NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162

[Close]

BLAST of Cp4.1LG11g05850 vs. NCBI nr
Match: OMP08066.1 (hypothetical protein COLO4_06805 [Corchorus olitorius])

HSP 1 Score: 53.5 bits (127), Expect = 1.32e-06
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
           MRS  S R RR+   T   K  R R++ L +LP N  S S         +   ++ ++L 
Sbjct: 1   MRSKRSPRGRRKVLLTRGRK-LRIRQINLSNLPNNNNSVSE--------SLRTSVERKLE 60

Query: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYG 104
            LQR++P   ++ +++ LFQ TADYI  L+ K+++L++L++FYG
Sbjct: 61  ELQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYG 95

[Close]

BLAST of Cp4.1LG11g05850 vs. NCBI nr
Match: XP_039792937.1 (uncharacterized protein LOC120658853 [Panicum virgatum])

HSP 1 Score: 52.4 bits (124), Expect = 2.70e-06
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 44  AAATGTTPSPAMH---KRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLT 103
           A+  G T  P  H   +RLR L+++VP  + D D++ L +RTADYI  L+LK+ +L+ L+
Sbjct: 19  ASPVGRTTRPFQHMVLRRLRELKKIVPD-SQDADVDMLLRRTADYISILELKVTVLRRLS 78

[Close]

BLAST of Cp4.1LG11g05850 vs. NCBI nr
Match: DAD27572.1 (TPA_asm: hypothetical protein HUJ06_029040 [Nelumbo nucifera])

HSP 1 Score: 51.2 bits (121), Expect = 8.53e-06
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 50  TPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYG 104
           T  P++  RL+ LQR+VPG   + D++ LFQRTADYI AL+L+++ LK L   +G
Sbjct: 33  TIRPSIEGRLKKLQRIVPGCQ-ELDVDALFQRTADYILALELQVSTLKSLILSFG 86

[Close]

BLAST of Cp4.1LG11g05850 vs. ExPASy TrEMBL
Match: A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 1.49e-50
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
           MRSIHSFR RRQAT+ + LKP+RRRR+KLLHLPK+T SSS +SA    TTPS AMHKRLR
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHT-SSSTVSATTNRTTPSAAMHKRLR 60

Query: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           NLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  NLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of Cp4.1LG11g05850 vs. ExPASy TrEMBL
Match: A0A7N0RGC2 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.26e-08
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 49  TTPSPA--MHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105
           T PSPA  + +RLR LQR+VPG +HD  +  LF+RTADYI  L+ K+  L++L+S  GL
Sbjct: 31  TPPSPAVVLQRRLRELQRVVPGSSHD--MGALFRRTADYISMLETKVAALRELSSTLGL 87

[Close]

BLAST of Cp4.1LG11g05850 vs. ExPASy TrEMBL
Match: A0A7N2L281 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.61e-08
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 23  RRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRT 82
           RRR +++    K    S   ++AA  TT    + ++LR LQ+++PG N + DL  LF R 
Sbjct: 10  RRRAMRMRGKKKRLRLSLVKNSAAVNTT----IQRKLRQLQKIIPGCN-EMDLETLFPRI 69

Query: 83  ADYIQALQLKLNILKDLTSFYG 104
           A+YI +LQ+K+NILK++++ YG
Sbjct: 70  ANYILSLQVKVNILKNISTLYG 86

[Close]

BLAST of Cp4.1LG11g05850 vs. ExPASy TrEMBL
Match: A0A1R3KLV4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.39e-07
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLLHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60
           MRS  S R RR+   T   K  R R++ L +LP N  S S         +   ++ ++L 
Sbjct: 1   MRSKRSPRGRRKVLLTRGRK-LRIRQINLSNLPNNNNSVSE--------SLRTSVERKLE 60

Query: 61  NLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYG 104
            LQR++P   ++ +++ LFQ TADYI  L+ K+++L++L++FYG
Sbjct: 61  ELQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYG 95

[Close]

BLAST of Cp4.1LG11g05850 vs. ExPASy TrEMBL
Match: B6TLX1 (Uncharacterized protein OS=Zea mays OX=4577 GN=100276975 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 7.52e-06
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 43  SAAATGTTPSPAMHK---RLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDL 102
           +AAA  T   P  H    RLR L+++VP      D++ L +RTADYI AL+LKL +L+ +
Sbjct: 18  TAAALRTGRRPFQHMALARLRELKKIVPDAQDAADVDVLLRRTADYICALELKLTVLRRV 77

Query: 103 TSFYG 104
           ++ YG
Sbjct: 78  SAIYG 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g05850 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g05850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598843.1	1.25e-65	99.05	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAE8651649.1	1.89e-49	80.95	hypothetical protein Csa_021260, partial [Cucumis sativus]	[more]
OMP08066.1	1.32e-06	35.58	hypothetical protein COLO4_06805 [Corchorus olitorius]	[more]
XP_039792937.1	2.70e-06	42.19	uncharacterized protein LOC120658853 [Panicum virgatum]	[more]
DAD27572.1	8.53e-06	49.09	TPA_asm: hypothetical protein HUJ06_029040 [Nelumbo nucifera]	[more]

BLAST of Cp4.1LG11g05850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ57	1.49e-50	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1	[more]
A0A7N0RGC2	3.26e-08	52.54	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A7N2L281	4.61e-08	40.24	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A1R3KLV4	6.39e-07	35.58	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1	[more]
B6TLX1	7.52e-06	43.08	Uncharacterized protein OS=Zea mays OX=4577 GN=100276975 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g05850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 12..103
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 12..103
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 49..100 e-value: 7.41313E-15 score: 61.4844
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 55..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g05850.1	Cp4.1LG11g05850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity