Cp4.1LG11g04810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG11g04810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibosomal RNA small subunit methyltransferase A
LocationCp4.1LG11: 2734598 .. 2739096 (-)
RNA-Seq ExpressionCp4.1LG11g04810
SyntenyCp4.1LG11g04810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGGGCCCAGCAAGCCAGCACATATATCCGACCTGGCATTAAGTTTCTTAGATTTCTTTTCCTCTACACCCAAACCTACAGTATTCAAAATGTAGTCTCCTCCATGGCGTGGATTCTTCAGAAACATTTTATTCTATGAATCGTAACCGTCCACGTGTTACCCTTATATTGACTTCGGAGGATATTGCTTGCATAGGATAAAGTCCTCGTTGCAGCCCTTCGCACCACGTAAACGTAATTGAATATTTTAATTTAGGAAATTTGATTGGCGTTAAATGATTACTGGAGGAGCCCATCGACTGCTTCAAAGGCTTCATCTTAAACTTCTCCAATTTTGCGCTCATTTTTGGCGATCGATTCACTGAGATTTTCGGTGTTTGATTTGGATTCGACTACCTTTGAATCGTCGGTTTGGAGAAGAGCCTTTGCTTCGAGATTTGTTCGTTGAGGTAGCTCTTTTCTGTGTTGCTTCAGCTTTAGTTTTTGCTTTATCACTATTGATTGTGCGTCTGTTTTGTGCATTTGGCCGCTTTTTGCGCAAGATTCCTGGTTTTTTTTGGTTACTTTCGGTTGCAATGTTTGAAAAGCAAGTTTTCGGAAAGTCAATTACTAGTGGGAGGAGGTTGCTTCAGGAAGAGATTGAATTAAGTTTCTATCTGTGTTTGGATTTAAGAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTATCCTCTTTTTTTTAAGGTAGGAACAATATTATATTATAGGTTCTCTGAATCTGGCCGACTTCTTGAGTAGAAGCAATCTCTCAAATGAAAGAGGGGAAAAAGGATTGTTGTTGGCTTTAATCGTGAACTTTGAGGAAGATAAATTTAGTAAAACCGTGTTTCCTTTCTCGGATACAGCTCGATTTTGTCTAGGTAGTGGTTATTGTTTTGATTTATCTATTTCCAATTCTGTGGGAGTTTCTACATAGATGCCACGGGAACTGGATTTAGAAAATTTTATGATTGGCTGTTTATCTTGATTATAACAATCTGGAAAATTGGCCAAATTCCTTGAAGAACCTTGAGATGATTTCCTCATTGTCATGGCTTGAATTAAGGTAAAACCGTGTTATCTCTCTTCTTATCTTCCTTCCTGAGCTTGCGGAATCCTTTGAATACATTCAAAACTTTGGCCTTTAGTCTATGCTACATTAGATGTGATGGAATTTACTTGTTTGTTTATTCCTTTTGTTAACATGTACAATCTTGCAGTAATTCTGTTTTTTGTCGTTTCGAAATTTGATCAATTTCTTCCTACTATTTTATGCTTAACAGGGAAAAGCTGCTCTATTTCTCGTCTGAGACCTTAGAATCTGCATGTAATTAGCTTATATTTCTTTGGAGGAACTTGGTACTCATTGGTGAAGAAAATTAAACTCCCACATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGTGGTTCTTCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGATAGCTTTTCTACTGGTAAGAGTTGTTTCTTCTCAAGCTTGCCTTTCGATTCGTGTTGCATGTTAGTTATTGCTTTTGCCTCCCAAAATAATCTTCTAGTCCTCTTTCGTAAATAGTGAACTCAATAACTTCGTTCATTTCCTATGATAGCTTAATTTCATTGCCCACGATCGAACTTATAATGTAAATAATGTAAATCAGGTCCGTATTCCAAACAAGAAAAAACTTTTATGTAATTTAATTGTTATCTCATATTCATAGACCCTTATTTTTTTTAGGATGATTATACTATTTCCTTTTCTGAATCATGCTCGGGAGTCATTGTGAGACTTCATCTCTAAGAAATATTACTTGACACATTCCCAATAGGATAATTATGCATTAGAAAGATATCGGCAAATCAAAGAACAACCGAAGGATCTATCTTTGTTGCCAAGAAAAGGGTGTCACCAGATCCTTGTTTGCATTTCTTGTAGCAGAGCTAACACAAATTTATGTACATTTATGTAGTAAAGTGATGAGTAAAGATCTCTTGAATGATTGGTACGATTTCTGGTGCAAGTAAAGAAACTCCAGACATGGAGGAGCCGTTAGTTAAAAGTGATTTTGATCATTGGAAACCAATCCAGTAGTTAAATCTATTCTCTATCTGTAGAACTGATTGAGCAAATAGGCTTAGAGCTGATAATAATGACAAGTTCAGAATGATAGAATCAAACCCAACTTCTAGACTTCACCGAATTATATTCTAATTGCTTTGGGCCTCTGCGGCAATATTTACAGTTTCCTTGTTCTATTTGATTTCGTACTGACTTCATATGGTATGATTGTTCTCTGGCCAAATTGAATAATACTAAATTAGTAGCGACATGTGTTAATTTCTTTTCGGTTGCTTTATGTTTTGTTGTAAGCTGATTATGTCTGCACTTTTCCATGAAGCAGAGAGCAAGAAATACATGGAACAGTGGCTGTCCTCTCTTCAGAACTGCTGATACACAGGATTTATAATGGTTGCACGCGGACGCTAATGCCTTGTTTCCAAGAAGAAAACAATTTGTGATCTTAAGCCATTTAAAAATTAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGATGATACAGGACTATCTATTCTGGCTTCGTTTGATTTACTGCTGGGAAGCAAATTGGGTGAACAGATTGGATGCAACCAGTGGGTGAAGGTCTCATCTTTTCAAAAAAAATTTGACCATGTTCTTAAGAAGAGAGAGGCCTAAATTATGACCTCATCTGTGTTGAAACCTGTTAAAATGGGATGTAAATACTTTAGAGACTCCTATATAAACATGGAAGGGAGACAGGAGGAAGAAGGCTGAGACAACCAGCTGGGGTTTGATGAAAAAGAATATTAAGGAGGTGCGAGTGCAAATGTCTTGTTATTCTTTGAAGTTCAGTTCAGTTCAGTTCAGTTCATGTATAAAGTGGGAAGGTGTTTAGTTTAGTTTAGTTCATCTGAAAGTTGCTGTAAAAGTGACTCATTTATGCATGCATCGTGTAAACATGATTTGAGTGGGCTTAGTTCATCTAAATATGGCTGTAAATGTTGACCCATTTGTAAAATTTGTTGTACATAATGACACAGTTGTGCTGTCATGTAAATATTTCTCTCCCCATTCAATGTAATATTCTTTAGATATTTACAGCATTATGAACAGTGAATAATTTCATCTGTTCACATAGTAAAACTTAGACTCAATAGGTTTAAAAGGCTATACTAGATTTAATTAGCGGGATAATAACAATCAAACCTTATAAATCGTAGAATATTAGTTCTCATTTCTGAACTCTTAGTCGAGAATATATTTTTTTCCTTTTTGAACTGTTAGTTGAGAATACATGAAAAAAGAGCTTCCAAAATTTAATTACTTTCTCCCTCTAGAAATTTTGTACAACACTGAAACTTGAATACAATTTTTAGAACATAACCGAATATACATACAATTATTATAATTGAAAGACAAACAAATACGCTTGAAAAGAACCTTATCTCCAAAAATAAACTTTCACATAACTGAATTTAAGAATGAATTAGAGNTTACAGTAAACAAGAGAGACAAAATAAACATACTGTTAGAGGGCTTGTAGCTAGATTTGAACAGAAGTCAAAGCAACGATACCAAGTTTTCCATGTTAGTATATGAACAGCGAACCCTGAGTCCAGACCTTGACATGGATCAGTCAGGAGGCAGAAGAATTTTGAAGTCAGAAACGTAAATGAAACAGGAATTTGAAGAACAAATCAAAATAAATACAGGTACAGAAGATGTTTCTGATTATATGTTGCTGTTCTTCCTTTCACTTCAGGTCAAATGGCTGCTGCTTCTCCGTGA

mRNA sequence

CGGGGCCCAGCAAGCCAGCACATATATCCGACCTGGCATTAAGTTTCTTAGATTTCTTTTCCTCTACACCCAAACCTACAGTATTCAAAATGTAGTCTCCTCCATGGCGTGGATTCTTCAGAAACATTTTATTCTATGAATCGTAACCGTCCACGTGTTACCCTTATATTGACTTCGGAGGATATTGCTTGCATAGGATAAAGTCCTCGTTGCAGCCCTTCGCACCACGTAAACGTAATTGAATATTTTAATTTAGGAAATTTGATTGGCGTTAAATGATTACTGGAGGAGCCCATCGACTGCTTCAAAGGCTTCATCTTAAACTTCTCCAATTTTGCGCTCATTTTTGGCGATCGATTCACTGAGATTTTCGGTGTTTGATTTGGATTCGACTACCTTTGAATCGTCGGTTTGGAGAAGAGCCTTTGCTTCGAGATTTGTTCGTTGAGGGAAAAGCTGCTCTATTTCTCGTCTGAGACCTTAGAATCTGCATGTAATTAGCTTATATTTCTTTGGAGGAACTTGGTACTCATTGGTGAAGAAAATTAAACTCCCACATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGTGGTTCTTCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGATAGCTTTTCTACTGGTCAAATGGCTGCTGCTTCTCCGTGA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGTGGTTCTTCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATTTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGATAGCTTTTCTACTGGTCAAATGGCTGCTGCTTCTCCGTGA

Protein sequence

MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQMAAASP
Homology
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BLAST of Cp4.1LG11g04810 vs. NCBI nr
Match: XP_023545351.1 (uncharacterized protein LOC111804795 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315 bits (807), Expect = 5.31e-108
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQ 157
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

[Close]
BLAST of Cp4.1LG11g04810 vs. NCBI nr
Match: XP_023545352.1 (uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314 bits (805), Expect = 1.04e-107
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155

[Close]
BLAST of Cp4.1LG11g04810 vs. NCBI nr
Match: XP_022997278.1 (uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997279.1 uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997280.1 uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima])

HSP 1 Score: 313 bits (801), Expect = 4.37e-107
Identity = 153/157 (97.45%), Postives = 156/157 (99.36%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQ 157
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

[Close]
BLAST of Cp4.1LG11g04810 vs. NCBI nr
Match: XP_022961798.1 (uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_022961799.1 uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_022961802.1 uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata])

HSP 1 Score: 313 bits (801), Expect = 4.37e-107
Identity = 153/157 (97.45%), Postives = 156/157 (99.36%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQ 157
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

[Close]
BLAST of Cp4.1LG11g04810 vs. NCBI nr
Match: XP_022997281.1 (uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima])

HSP 1 Score: 312 bits (799), Expect = 8.51e-107
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155

[Close]
BLAST of Cp4.1LG11g04810 vs. ExPASy TrEMBL
Match: A0A6J1KDE3 (uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 313 bits (801), Expect = 2.11e-107
Identity = 153/157 (97.45%), Postives = 156/157 (99.36%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQ 157
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

[Close]
BLAST of Cp4.1LG11g04810 vs. ExPASy TrEMBL
Match: A0A6J1HCV2 (uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 313 bits (801), Expect = 2.11e-107
Identity = 153/157 (97.45%), Postives = 156/157 (99.36%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQ 157
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST +
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTAE 157

[Close]
BLAST of Cp4.1LG11g04810 vs. ExPASy TrEMBL
Match: A0A6J1K730 (uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 312 bits (799), Expect = 4.12e-107
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155

[Close]
BLAST of Cp4.1LG11g04810 vs. ExPASy TrEMBL
Match: A0A6J1HCV7 (uncharacterized protein LOC111462457 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462457 PE=4 SV=1)

HSP 1 Score: 312 bits (799), Expect = 4.12e-107
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155
           AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFST 155

[Close]
BLAST of Cp4.1LG11g04810 vs. ExPASy TrEMBL
Match: A0A5A7VFJ3 (Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004290 PE=4 SV=1)

HSP 1 Score: 299 bits (766), Expect = 4.43e-102
Identity = 144/157 (91.72%), Postives = 152/157 (96.82%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISSSSRRV 60
           MSVAFPQLSWWL SGKHKEP+SSNGGS+LNASLDTANRETDTLKF LVNGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  KRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120
           KRKWHSREERK+DREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD+SDNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQ 157
           AVLVPCY RIYNDFVDETK S+LSAVGNI+DSFS G+
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGK 157

[Close]
BLAST of Cp4.1LG11g04810 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-14
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 0 

Query: 1   MSVAFPQLSWWLRSG-----KHKEPQSSNGGSSLNASLDTANRETDTLKFSLVNGANISS 60
           M+V+FP+L  WL  G     + K+     G SSL+ SL    ++T T K       + SS
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSL----KKTTTSK-----TGSSSS 60

Query: 61  SSRRVKRKWHSREERKIDREYDIVLVPSDGGCISGSESDDSDWSIGWSEPHGPGFQSDDD 120
           S ++ KR W  R       E D +      G +   E DD +WSIGW EPHGPGF+++DD
Sbjct: 61  SVKKTKRGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDD 120

Query: 121 SDNSFAVLVPCYARI 131
               F VLVP Y ++
Sbjct: 121 DCGGFVVLVPLYKKV 120

[Close]
BLAST of Cp4.1LG11g04810 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKIS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNN-Q 107

Query: 149 VLSAVGNISDSFSTG 157
           +LSAV N+ +    G
Sbjct: 108 LLSAVKNLPNGLPPG 121

[Close]
BLAST of Cp4.1LG11g04810 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKIS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNN-Q 107

Query: 149 VLSAVGNI 150
           +LSAV N+
Sbjct: 108 LLSAVKNL 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g04810 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g04810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545351.15.31e-10898.73uncharacterized protein LOC111804795 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023545352.11.04e-107100.00uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022997278.14.37e-10797.45uncharacterized protein LOC111492231 isoform X1 [Cucurbita maxima] >XP_022997279... [more]
XP_022961798.14.37e-10797.45uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata] >XP_0229617... [more]
XP_022997281.18.51e-10798.71uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima][more]
BLAST of Cp4.1LG11g04810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KDE32.11e-10797.45uncharacterized protein LOC111492231 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCV22.11e-10797.45uncharacterized protein LOC111462457 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1K7304.12e-10798.71uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HCV74.12e-10798.71uncharacterized protein LOC111462457 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A5A7VFJ34.43e-10291.72Ribosomal RNA small subunit methyltransferase A OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of Cp4.1LG11g04810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65480.15.8e-1437.78unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G38060.11.9e-0945.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G38060.23.3e-0948.53unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..115
NoneNo IPR availablePANTHERPTHR34464:SF5SUBFAMILY NOT NAMEDcoord: 1..157
NoneNo IPR availablePANTHERPTHR34464OS09G0376300 PROTEINcoord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g04810.1Cp4.1LG11g04810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity