Cp4.1LG11g04600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g04600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Protein CutA
Location	Cp4.1LG11: 2646556 .. 2650081 (+)
RNA-Seq Expression	Cp4.1LG11g04600
Synteny	Cp4.1LG11g04600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAGGCTTTGGTTTGTTCGAATTCCCAAGTGAAGGCATCAAGTAAGCTCAAGCCGGAGCGTCGAAAAGGCGCGACACGATTAGCGCTATAAAACCGAAATGGCCTTTACTCTCTGCAGCAGAGTCGCGACTCCATTGCTATCACCCTCTGTCCTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGATTCTCCAATCTCTTCGTCTCCAAAACGGGCTCCGCTCTGTCGCTGCCTTTCGCACCTCTCTTGAGGTACTTCTTTTCGCTGATTCATTTCTTCCACGATTGTTTCTTGCTGTGAATTTGCTTTAGTTGCTGGTTATTTTGTTTAGATTCTTTATTTGATTTGTATTCATGTTGATTTGCTAACGGAAAACGTATATCAGATCGACGTTTGGAAGTCAAGGACCTGCTAGGAACGTGCATTTGATAAAAATGGAAGGGAATAGTGCCGCGGTGCCTAGCATTGTTGTTTATGTCACTGTTCCTAACAGGGAAGCAGGTTCTGTATTTTCTCTCTGCTCTAGAAGTCTCGCGTTATTTTGTGGTTTGGAATTCATTGATCATTCACTGGCATCTTGTAAATTGGAACAAGATATTATAATCGGATTAGCATAGATATTTATCGTAGCGATGCCTTTTGTTTTGAGGTTTCCAATATCTCGTGTTCGGCATTTGACTTGGTTGCTTGTCAGTCAATCTAGTGTCAGGCTCTTCTAGCAGCGGTATATACACTTTGGTTGATGGTAACATAGTTGTATGTTGATCGAATAGTATGGTAATTGACGATATGGTTTCAGTATTGTACTTCTTATGCTAGTAATGTCTTTACTGTACTTGGCTACGATGGAGTTGAGTGTTGATACTTGATAGGATCTTGTTGATTATGATTTAGACATATATATATAATTGGCGCATTGTACTAATAATGACCAGACTCGGTAGGCCGATGATGAAGTATATTGTAGCTTAGGAAATGCTGTGATGTATATATATTATTGTTGAATATATAGCATGTGTTCTTATCCAAGAACAAAAAAGAATATGTAGCATGGTTTGTTTTCTTCTGGTGTTAAAGAATGTTTAACGGGGACCGACTCACTTGGATGATTAATGTTCTAAGATAGTAAGGGTCTTTTTGGTATTTAACATGGAGTATGTTTTATGCTTTTGAATTCTCTGGGTTAAATGGGTTCAACAAATATCTGTTTGGCATATATTTCTTTAAACGGTTTGTGGATTTAGTGATCCAAATAGTAGAAATTCTAAGATCAACATATTTATGCCGGTGTATCCAATTTTGAGTTTGAAATTTAAAAATCCAGAATTATACTTAAAAAGATTAAGGTTTTGATAAATATAGAATTTTATTTTATTAACTACTCCATTGTTGTTAAAATTAAATTAACATAATAAATTAATCCAATGTTTCATATTCCAATCCAATAAGTTCCTCTATTTTTTCCGTTGTGACCACTTGCTTCTATTTATTTTTTAAAAAGAAAATGATATGTCTAACCATGTAATTTAAGTGTCTAGAAAGCGTTGGATTGGTGTTTAATGCCCAAGCTAAGGTGTAATGTGTTTCATAAGACTGATTGGTTGGGCAATGGGTAGAGAAAGGGAGGTTGTAGAATTAACTGACTTTTCAGTACTATAGGATTTACATTTTAGTAGATGTTATGTTTCTTATCTCACTCGTTCACATTCTTTCTACAGGTAAGAAACTAGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTTCCCGGTATGTGCATCTTCTCCTGCTGCTTGTCAGCTTAAAGTGAAAGAATGCATTCTTCATAGTTTGGAAAAGATATTAGTTCAACAATATTTATAATCCATGCTAGCAGAACATTTGTTATCCTCCTTTAAGTTCTCTATTCATATAAATAAAGTTGCTTCTGACCATTTAAAATTGATGGATCTTCCCTGGAATAAATGCTGTTTTTGAGTGAAGGAAACTTGTTATAAATACTCTACTTGATCATGTTGGGAACAGAATTTCTTTCCTTTTTCTTATAAAAAAAAAAAAAAAAGAATTGCTTTCCTTTTCATCTGTTGGCACTTCAGACCGTGTGATTTCACAAACAGAAGTGATGCATCAAGACGTTTTCACAGCCCCGTTTTATTTTTTTTTTCTCCCAATTTTCACAATGCATTTCTTTTCTTTTAGAGGTTTATTTTTATTTATTGCAACTGCCTATAGTAATATGACTTTTCAGATTTCTAATGAATACTTTATATATGCAGGTATAGAATCCGTCTACCAGTGGAAGGGAGAGGTATGGTTCTCATTTTCATAAATTGCTATATAGTTATCAAGTATGTGATCACTTGTATGTCTTTTCCAGAAAAAGAATTTAACTGTAGGCTTTTTGTTTCTGGTTGACGCAGATCCAGACAGACGCTGAGGAACTTCTGATTATTAAGACCAGGCAATCACTTCTGGGAGCACTGACAGATCATGTCAAGGCAAATCACCCATACGAGTAAGCCTAACATTCTTCCTTTGTTTTTGTCTTTTGTTTTGTTTGTTGCTGTCTGTGTGTGTGTTTCTCATTTTCAATGTCGGGTACAATGTGAACTGTTCAGCTTATCGGCTAGACATTTAGGGGTTTTAAGGATAATATTTTTATTTTGTTAACCATATTCATTTGCTGATATCTTTTTTTTTTTTGTTAGTCATTATTTTCATGAATGACTGTAAAATCTTAGCTAAAATTTGAAAACTAAGTAGCAGAATACCAAAAGAAAATATAATAATAATAAAACCATTATAAAAAATGAGATAATGGACCGTATTTGGTTTTTGAAATTAAGCTTATAAACTGTATTTGACCTCTGGGTTCTTGTTTTTCAAATTTATCTAAGAATTTAAATTTTTACTTGGGAAAGATGAAAGCTGTGGTAAAGATAAGAATTGAAATCTTTACTTGGGAAATATGAAAACTGTGGTAAAAATGATGAGAAAACAAGCTAGTTATATGTTTAAAAGCCCTATTTTATCCCTTCCAAGGATTTACCTCTATCTTTTTTACACAGGGTGCCTGAAGTTATTGCTTTGCCTATCAATGGTGGCAGCATGGAGTACCTAGAGTGGATCAAGAGCAGCACGAAGGACTAAGTTTCTCTGCTTTAACAAGTTTATTCGACTATATCAAGTATTCTGTTTAATTTGGTATTATTCGACTATATCAATAAACTTGATGCTGTCTTGTAAATAACAGTCCTTATTTGGTTTCAAAGAGTTATATCTTTTGTTCATCTTATGCATTGTGTTATGTCAATGACTCATTCCCTGAACTTACAGCAAATATGTGTTTGCAAAATACGAGGGGAAAAAACTGCGGGAGTTTTCGACTTCGTTCGAGGTCAGAAATCTCAACCTCAAAACTTCATTACCATTTAGAGGAGTCCCTGGGAAACATTCTTTAAATTTGCAGCTAGGTACTGGGATGGTTGACATTCAGT

mRNA sequence

CGAAGGCTTTGGTTTGTTCGAATTCCCAAGTGAAGGCATCAAGTAAGCTCAAGCCGGAGCGTCGAAAAGGCGCGACACGATTAGCGCTATAAAACCGAAATGGCCTTTACTCTCTGCAGCAGAGTCGCGACTCCATTGCTATCACCCTCTGTCCTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGATTCTCCAATCTCTTCGTCTCCAAAACGGGCTCCGCTCTGTCGCTGCCTTTCGCACCTCTCTTGAGATCGACGTTTGGAAGTCAAGGACCTGCTAGGAACGTGCATTTGATAAAAATGGAAGGGAATAGTGCCGCGGTGCCTAGCATTGTTGTTTATGTCACTGTTCCTAACAGGGAAGCAGGTAAGAAACTAGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTTCCCGGTATAGAATCCGTCTACCAGTGGAAGGGAGAGATCCAGACAGACGCTGAGGAACTTCTGATTATTAAGACCAGGCAATCACTTCTGGGAGCACTGACAGATCATGTCAAGGCAAATCACCCATACGAGGTGCCTGAAGTTATTGCTTTGCCTATCAATGGTGGCAGCATGGAGTACCTAGAGTGGATCAAGAGCAGCACGAAGGACTAAGTTTCTCTGCTTTAACAAGTTTATTCGACTATATCAAGTATTCTGTTTAATTTGCAAATATGTGTTTGCAAAATACGAGGGGAAAAAACTGCGGGAGTTTTCGACTTCGTTCGAGGTCAGAAATCTCAACCTCAAAACTTCATTACCATTTAGAGGAGTCCCTGGGAAACATTCTTTAAATTTGCAGCTAGGTACTGGGATGGTTGACATTCAGT

Coding sequence (CDS)

ATGGCCTTTACTCTCTGCAGCAGAGTCGCGACTCCATTGCTATCACCCTCTGTCCTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGATTCTCCAATCTCTTCGTCTCCAAAACGGGCTCCGCTCTGTCGCTGCCTTTCGCACCTCTCTTGAGATCGACGTTTGGAAGTCAAGGACCTGCTAGGAACGTGCATTTGATAAAAATGGAAGGGAATAGTGCCGCGGTGCCTAGCATTGTTGTTTATGTCACTGTTCCTAACAGGGAAGCAGGTAAGAAACTAGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTTCCCGGTATAGAATCCGTCTACCAGTGGAAGGGAGAGATCCAGACAGACGCTGAGGAACTTCTGATTATTAAGACCAGGCAATCACTTCTGGGAGCACTGACAGATCATGTCAAGGCAAATCACCCATACGAGGTGCCTGAAGTTATTGCTTTGCCTATCAATGGTGGCAGCATGGAGTACCTAGAGTGGATCAAGAGCAGCACGAAGGACTAA

Protein sequence

MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTFGSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIKSSTKD

Homology

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BLAST of Cp4.1LG11g04600 vs. ExPASy Swiss-Prot
Match: P93009 (Protein CutA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CUTA PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-54
Identity = 118/189 (62.43%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLS-FGFSNLFVS---KTGSALSLPFAPLL 60
           MA +L +R++  + S    RR  P+VGAFCVLS    S+L  S   K+G A S    PLL
Sbjct: 1   MASSLTTRLSAVIGS----RRSFPIVGAFCVLSTLSISSLSSSSPFKSGCAQSFSVVPLL 60

Query: 61  RSTFGSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVP 120
           RS F S+  + +   I+ME +S  VPSIVVYVTVPNREAGKKLA SIV+EKLAACVNIVP
Sbjct: 61  RSKFSSKAFSSS---IRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVP 120

Query: 121 GIESVYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYL 180
           GIESVY+W+G++Q+D+EELLIIKTRQSLL  LT+HV ANH Y+VPEVIALPI GGS +YL
Sbjct: 121 GIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYL 180

Query: 181 EWIKSSTKD 186
           EW+K+ST++
Sbjct: 181 EWLKNSTRN 182

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy Swiss-Prot
Match: Q109R6 (Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CUTA1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.0e-48
Identity = 102/172 (59.30%), Postives = 123/172 (71.51%), Query Frame = 0


Query: 14  LSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTFGSQGPARNVHLIK 73
           LSP +LRRR P+ GA   LS G      S + SA +                       +
Sbjct: 28  LSPLLLRRRAPIAGALLFLSLGAFAGVRSLSSSASA-----------------------R 87

Query: 74  MEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDAE 133
           ME  S  VPSIVVYVTVPN+EAGK+LA SI+ EKLAACVNIVPGIESVY W+G++QTDAE
Sbjct: 88  MESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAE 147

Query: 134 ELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIKSSTKD 186
           ELLIIKTR+SLL ALT+HVKANH Y+VPEVIALPI GG+++YLEW+K+ST++
Sbjct: 148 ELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 176

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy Swiss-Prot
Match: O60888 (Protein CutA OS=Homo sapiens OX=9606 GN=CUTA PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 64/161 (39.75%), Postives = 98/161 (60.87%), Query Frame = 0


Query: 31  VLSFGFSNLFVSKTGSALSLPFA------PLLRSTFGSQGPARNVHLIKMEGNSAAVPSI 90
           VL  G ++L +S       LP A      P +  T  S  P          G+     S+
Sbjct: 9   VLLGGVASLLLSFVWMPALLPVASRLLLLPRVLLTMASGSPPTQPSPASDSGSGYVPGSV 68

Query: 91  -VVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDAEELLIIKTRQS 150
              +VT PN +  K++A ++V+++LAACVN++P I S+Y+WKG+I+ D+E L++IKT+ S
Sbjct: 69  SAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSS 128

Query: 151 LLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIKSSTK 185
           L+ ALTD V++ HPYEV EVIALP+  G+  YL+W++  T+
Sbjct: 129 LVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy Swiss-Prot
Match: P69678 (Protein CutA OS=Bos taurus OX=9913 GN=CUTA PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 69/160 (43.12%), Postives = 100/160 (62.50%), Query Frame = 0


Query: 27  GAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTFGSQGPARNVHLIKMEGNSAAVPSIV- 86
           GA  +LS  +    +      L LP A LL    GS  PA+          SA VP  V 
Sbjct: 14  GAALLLSLFWMPTLLPAASRLLLLPRA-LLSMASGSP-PAQP----SSSSRSAYVPGSVS 73

Query: 87  -VYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDAEELLIIKTRQSL 146
             +VT PN +  K++A ++V+++L ACVN+VP I S+Y+WKG+I+ D+E L++IKT+ SL
Sbjct: 74  AAFVTCPNEKVAKEIARAVVEKRL-ACVNLVPQITSIYEWKGKIEEDSEVLMMIKTQSSL 133

Query: 147 LGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIKSSTK 185
           + ALTD V++ HPYEV EVIALP+  G+  YL+W++  T+
Sbjct: 134 VPALTDFVRSVHPYEVAEVIALPVEQGNSPYLQWVRQVTE 166

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy Swiss-Prot
Match: Q7SIA8 (Divalent-cation tolerance protein CutA OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=cutA PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 85  VVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDAEELLIIKTRQSL 144
           VV +TVP+ E  + +A+++V+E+LAACVNIVPG+ S+Y+W+GE+  D E LL++KT    
Sbjct: 4   VVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHA 63

Query: 145 LGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIKSST 184
              L + VKA HPY VPE++ALPI  G+ EYL+W++ +T
Sbjct: 64  FPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102

[Close]

BLAST of Cp4.1LG11g04600 vs. NCBI nr
Match: XP_023545579.1 (protein CutA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360 bits (923), Expect = 4.22e-125
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF
Sbjct: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
           GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK
Sbjct: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. NCBI nr
Match: XP_022997267.1 (protein CutA, chloroplastic [Cucurbita maxima])

HSP 1 Score: 357 bits (916), Expect = 4.93e-124
Identity = 183/185 (98.92%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVS+TGSALSLPFAPLLRSTF
Sbjct: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSRTGSALSLPFAPLLRSTF 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
           GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS+EYLEWIK
Sbjct: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSVEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. NCBI nr
Match: KAG7029661.1 (Protein CutA, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350 bits (898), Expect = 2.74e-121
Identity = 181/185 (97.84%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTLCSRVATPLLS SVLRRRLPLVGAFCVLS GFSNLFVS+TGSALSLPFAPLLRSTF
Sbjct: 1   MAFTLCSRVATPLLSSSVLRRRLPLVGAFCVLSLGFSNLFVSRTGSALSLPFAPLLRSTF 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
           GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS EYLEWIK
Sbjct: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSGEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. NCBI nr
Match: XP_022962588.1 (protein CutA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 347 bits (890), Expect = 4.54e-120
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTLCSRVATPLLS SVLRRRLPLVGAFCVLS GFSNLFVS+TGSALSLPFAPLLRSTF
Sbjct: 1   MAFTLCSRVATPLLSSSVLRRRLPLVGAFCVLSLGFSNLFVSRTGSALSLPFAPLLRSTF 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
           GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIV GIES
Sbjct: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVSGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS EYLEWIK
Sbjct: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSGEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. NCBI nr
Match: XP_038886215.1 (protein CutA, chloroplastic [Benincasa hispida] >XP_038886216.1 protein CutA, chloroplastic [Benincasa hispida])

HSP 1 Score: 332 bits (850), Expect = 5.69e-114
Identity = 170/185 (91.89%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MA T CSR  +PL+S  VLRRRLPLVGAFCVLSFG SNLFVSKTGSALSLPF PLLRS F
Sbjct: 1   MALTFCSRATSPLISSFVLRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLLRSKF 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
            SQGPARNVHLIKMEG+SAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  ASQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQTD EELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS+EYLEWIK
Sbjct: 121 VYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSLEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy TrEMBL
Match: A0A6J1K4I7 (protein CutA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492224 PE=3 SV=1)

HSP 1 Score: 357 bits (916), Expect = 2.39e-124
Identity = 183/185 (98.92%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVS+TGSALSLPFAPLLRSTF
Sbjct: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSRTGSALSLPFAPLLRSTF 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
           GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS+EYLEWIK
Sbjct: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSVEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy TrEMBL
Match: A0A6J1HF76 (protein CutA, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462991 PE=3 SV=1)

HSP 1 Score: 347 bits (890), Expect = 2.20e-120
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTLCSRVATPLLS SVLRRRLPLVGAFCVLS GFSNLFVS+TGSALSLPFAPLLRSTF
Sbjct: 1   MAFTLCSRVATPLLSSSVLRRRLPLVGAFCVLSLGFSNLFVSRTGSALSLPFAPLLRSTF 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
           GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIV GIES
Sbjct: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVSGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS EYLEWIK
Sbjct: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSGEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy TrEMBL
Match: A0A1S3BBF3 (protein CutA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488107 PE=3 SV=1)

HSP 1 Score: 327 bits (838), Expect = 1.86e-112
Identity = 168/185 (90.81%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTL SR ATPL+S   LRRRLPLVGAFCVLSFG SNLFVSKTGSALS+PF PLLRS  
Sbjct: 1   MAFTLSSRAATPLISCFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSVPFVPLLRSKL 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
             QGPARNVHLIKMEG+SAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           +YQWKGEIQTD EELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS+EYLEWIK
Sbjct: 121 IYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSLEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy TrEMBL
Match: A0A0A0LRU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370360 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 2.64e-112
Identity = 168/185 (90.81%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTL SR ATPL++   LRRRLPLVGAFCVLSFG SNLFVSKTGSALSLPF PLLRS  
Sbjct: 1   MAFTLSSRAATPLITSFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLLRSKL 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
             QGPARNVHLIKMEG+SAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           VYQWKGEIQ+D EELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGS+EYLEWIK
Sbjct: 121 VYQWKGEIQSDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSLEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. ExPASy TrEMBL
Match: A0A5A7VD29 (Protein CutA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004450 PE=3 SV=1)

HSP 1 Score: 325 bits (832), Expect = 1.53e-111
Identity = 168/185 (90.81%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLLRSTF 60
           MAFTL SR ATPL+S   LRRRLPLVGAFCVLSFG SNLFVSKTGSALSLPF PLLRS  
Sbjct: 1   MAFTLSSRAATPLISCFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLLRSKL 60

Query: 61  GSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120
             QGPARNVHLIKMEG+SAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES
Sbjct: 61  AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIES 120

Query: 121 VYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYLEWIK 180
           +YQWKGEIQTD EELLIIKTRQSLLGALTDHVKA HPYEVPEVIALPINGGS+EYLEWIK
Sbjct: 121 IYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKAIHPYEVPEVIALPINGGSLEYLEWIK 180

Query: 181 SSTKD 185
           SSTKD
Sbjct: 181 SSTKD 185

[Close]

BLAST of Cp4.1LG11g04600 vs. TAIR 10
Match: AT2G33740.2 (Nitrogen regulatory PII-like, alpha/beta )

HSP 1 Score: 211.5 bits (537), Expect = 5.9e-55
Identity = 118/189 (62.43%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLS-FGFSNLFVS---KTGSALSLPFAPLL 60
           MA +L +R++  + S    RR  P+VGAFCVLS    S+L  S   K+G A S    PLL
Sbjct: 1   MASSLTTRLSAVIGS----RRSFPIVGAFCVLSTLSISSLSSSSPFKSGCAQSFSVVPLL 60

Query: 61  RSTFGSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVP 120
           RS F S+  + +   I+ME +S  VPSIVVYVTVPNREAGKKLA SIV+EKLAACVNIVP
Sbjct: 61  RSKFSSKAFSSS---IRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVP 120

Query: 121 GIESVYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSMEYL 180
           GIESVY+W+G++Q+D+EELLIIKTRQSLL  LT+HV ANH Y+VPEVIALPI GGS +YL
Sbjct: 121 GIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYL 180

Query: 181 EWIKSSTKD 186
           EW+K+ST++
Sbjct: 181 EWLKNSTRN 182

[Close]

BLAST of Cp4.1LG11g04600 vs. TAIR 10
Match: AT2G33740.1 (Nitrogen regulatory PII-like, alpha/beta )

HSP 1 Score: 171.0 bits (432), Expect = 8.9e-43
Identity = 100/163 (61.35%), Postives = 121/163 (74.23%), Query Frame = 0


Query: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLS-FGFSNLFVS---KTGSALSLPFAPLL 60
           MA +L +R++  + S    RR  P+VGAFCVLS    S+L  S   K+G A S    PLL
Sbjct: 1   MASSLTTRLSAVIGS----RRSFPIVGAFCVLSTLSISSLSSSSPFKSGCAQSFSVVPLL 60

Query: 61  RSTFGSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVP 120
           RS F S+  + +   I+ME +S  VPSIVVYVTVPNREAGKKLA SIV+EKLAACVNIVP
Sbjct: 61  RSKFSSKAFSSS---IRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVP 120

Query: 121 GIESVYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYE 160
           GIESVY+W+G++Q+D+EELLIIKTRQSLL  LT+HV ANH YE
Sbjct: 121 GIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYE 156

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g04600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93009	8.3e-54	62.43	Protein CutA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CUTA PE=1 SV=1	[more]
Q109R6	4.0e-48	59.30	Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CUTA1 ...	[more]
O60888	1.1e-26	39.75	Protein CutA OS=Homo sapiens OX=9606 GN=CUTA PE=1 SV=2	[more]
P69678	2.8e-25	43.13	Protein CutA OS=Bos taurus OX=9913 GN=CUTA PE=1 SV=1	[more]
Q7SIA8	2.8e-25	50.51	Divalent-cation tolerance protein CutA OS=Thermus thermophilus (strain ATCC 2763...	[more]

BLAST of Cp4.1LG11g04600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545579.1	4.22e-125	100.00	protein CutA, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022997267.1	4.93e-124	98.92	protein CutA, chloroplastic [Cucurbita maxima]	[more]
KAG7029661.1	2.74e-121	97.84	Protein CutA, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962588.1	4.54e-120	97.30	protein CutA, chloroplastic [Cucurbita moschata]	[more]
XP_038886215.1	5.69e-114	91.89	protein CutA, chloroplastic [Benincasa hispida] >XP_038886216.1 protein CutA, ch...	[more]

BLAST of Cp4.1LG11g04600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4I7	2.39e-124	98.92	protein CutA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492224 PE=3 SV=...	[more]
A0A6J1HF76	2.20e-120	97.30	protein CutA, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462991 PE=3 S...	[more]
A0A1S3BBF3	1.86e-112	90.81	protein CutA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488107 PE=3 SV=1	[more]
A0A0A0LRU0	2.64e-112	90.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370360 PE=3 SV=1	[more]
A0A5A7VD29	1.53e-111	90.81	Protein CutA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004450 P...	[more]

BLAST of Cp4.1LG11g04600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33740.2	5.9e-55	62.43	Nitrogen regulatory PII-like, alpha/beta	[more]
AT2G33740.1	8.9e-43	61.35	Nitrogen regulatory PII-like, alpha/beta	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015867	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	GENE3D	3.30.70.120		coord: 63..184 e-value: 2.6E-49 score: 167.7
IPR004323	Divalent ion tolerance protein, CutA	PFAM	PF03091	CutA1	coord: 84..181 e-value: 2.4E-38 score: 129.9
IPR004323	Divalent ion tolerance protein, CutA	PANTHER	PTHR23419	DIVALENT CATION TOLERANCE CUTA-RELATED	coord: 8..183
None	No IPR available	PANTHER	PTHR23419:SF8	FI09726P	coord: 8..183
IPR011322	Nitrogen regulatory PII-like, alpha/beta	SUPERFAMILY	54913	GlnB-like	coord: 83..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g04600.1	Cp4.1LG11g04600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010038	response to metal ion
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005507	copper ion binding