Cp4.1LG11g04460 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g04460
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type E3 ubiquitin transferase
Location	Cp4.1LG11: 2562752 .. 2564606 (+)
RNA-Seq Expression	Cp4.1LG11g04460
Synteny	Cp4.1LG11g04460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGGGGAGAGAATTGTCTGGCTTAAGCGTTACGAGCTAAAGGGTAGTTGGTAGTAACGTAAATTAATTTCTACGACAAATTCCTCGGTCTCGATCACTATCAGGTTTAATTTAAATGTTTGAAAATTGATCAAAGTCTTATGTTAGCTTAGTAAGAAGAATATCATACGTAGATGATGATTGATTTAAAATTTTATTGAAAATATATGTAACCGTCCAAGCTCACCTTTTTGGACTTTTGATTTCGGGCTTTCTCAAACGCGTATGCTAGTGAGAGATTTCTAGACTCTTATAAAGAACGCTCGCCACTCAAGTCCACCGCTGATAAATATTGTCTTATTTGGTTTTCTTTCGGGCTCGAGATTTTAAAATACATTTGTTGAGGAGAGGTTTTTACACCCGTATAAAGAATATTTTTTTCTGTCTCCAACCAATGTGAGATCTCACAATCCACACCATTCTGGGCCAATGTCTTCGTTGTCACTCATTCCTCTCTCCCTCTGCAACTTAGATGGGATCTCACAATCCACTCTATTCGACACCTAACGTACTTGCTGACACTTGTTTCTCCCTCCAACCGATGACGAATCTCGGAATATAGGTTTGAATTGAGATAAAACAAGTTTTGAATGTCGAATTTTGATGTCACGAGCATGCTTGTCCAAAGTATGTTGCCTATGGCTGCATGACAGATGTCCCAATCTTGTTTGTTTGAGTCGGTAGACAGTGAGGATGTCACGGTCATGATTGTCCAAAGCAGGTTGCTTATTCGTCGTTTCATATTATAGTAATAAAATTGAGATTGAAATTTAACCTAATTGTTAAGGTGGAGGAGCTTAGTCATCTTTTAATTACTTTGTTTATTTCATTTCTTCAAACCAAAGAAATTCAGAGATCTTCATTTTTCCTTCCATTCCTCTGTTTCTCTCTCAACATTCTAAGCTTCTTCAGAGCTCCCCTGCCATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCTACCGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTCTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCCGCCGCCGTTTGACGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATAGTCGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGAAACCAAGGGGCGGAGACGTCGCAATTGGACGGCGAAGATGGAGAGTTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTACAGCAATCGATCATCAACTCAATCACGGTTTGCAAATACAAAAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAACTGCTCCGGCTGTTGCCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACATGGCTGAGGACTCATACCACTTGCCCACTCTGTCGAGCCCATATTCTTACTGATTTTCCAACCTCCAACACCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGTCGTAATTGAGGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTCTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTGATGAACAGAGAGACATTGGGGTTCCTCCGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAAATGAAACAATGATGAACTGTTCTTCTGCAACATGA

mRNA sequence

ATGAGGGAGAGAATTGTCTGGCTTAAGCGTTACGAGCTAAAGGTCGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGAAACCAAGGGGCGGAGACGTCGCAATTGGACGGCGAAGATGGAGAGTTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTACAGCAATCGATCATCAACTCAATCACGGTTTGCAAATACAAAAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAACTGCTCCGGCTGTTGCCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACATGGCTGAGGACTCATACCACTTGCCCACTCTGTCGAGCCCATATTCTTACTGATTTTCCAACCTCCAACACCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGTCGTAATTGAGGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTCTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTGATGAACAGAGAGACATTGGGGTTCCTCCGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAAATGAAACAATGATGAACTGTTCTTCTGCAACATGA

Coding sequence (CDS)

ATGAGGGAGAGAATTGTCTGGCTTAAGCGTTACGAGCTAAAGGTCGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGAAACCAAGGGGCGGAGACGTCGCAATTGGACGGCGAAGATGGAGAGTTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTACAGCAATCGATCATCAACTCAATCACGGTTTGCAAATACAAAAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAACTGCTCCGGCTGTTGCCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACATGGCTGAGGACTCATACCACTTGCCCACTCTGTCGAGCCCATATTCTTACTGATTTTCCAACCTCCAACACCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGTCGTAATTGAGGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTCTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTGATGAACAGAGAGACATTGGGGTTCCTCCGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAAATGAAACAATGATGAACTGTTCTTCTGCAACATGA

Protein sequence

MRERIVWLKRYELKVVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIGVPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT

Homology

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-37
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 27  NQGAETSQLDGEDG------EFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLI 86
           NQG  T Q D ED       EF +  QVDHPIW I T GLQQSIINSIT+C YK+G+GLI
Sbjct: 115 NQG--TYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLI 174

Query: 87  EGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHI 131
           E T C VCLNEF+EDE LRLLPKC+HAFHI C+DTWL +HT CPLCRA I
Sbjct: 175 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGI 222

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-31
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 31  ETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLN 90
           +T+Q + ED     +    H +W I TVGL +S INSITV  +KKGEG+I+GT CSVCLN
Sbjct: 81  DTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLN 140

Query: 91  EFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL 132
           EF+EDE LRLLPKCSHAFH+ C+DTWL +H  CPLCRA +L
Sbjct: 141 EFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 7.4e-28
Identity = 76/191 (39.79%), Postives = 102/191 (53.40%), Query Frame = 0


Query: 24  GSGNQGAETSQLDGEDGEFLNENQVDHPIWFIT-TVGLQQSIINSITVCKYKKGEGLIEG 83
           GS + GA      G  G   +     H  W ++   GL +++IN ITVCKY++G+G +  
Sbjct: 95  GSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHT 154

Query: 84  TVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNTARP 143
           T CSVCL EF + E LRLLP+CSHAFH  C+DTWL++H+ CPLCRA+I   F T   A P
Sbjct: 155 TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANI--TFVTVGLASP 214

Query: 144 PNS----GHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVD---------- 198
                  G    +  + VV+    +ENL  E+Q AVS     ++  DA D          
Sbjct: 215 EPEGCAPGETGGDNTHEVVVVMDGLENLCEEQQEAVSRASTADDDHDAKDVAEGMEEANG 274

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-24
Identity = 50/96 (52.08%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 59  GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLR 118
           GL +S+I SITV KYK G+G ++G+ CSVCL+EF+E+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175

Query: 119 THTTCPLCRAHIL-TDFPTSNTARPPNSGHLNQNEA 154
           +H+ CPLCRA +   + PT++  +  +    NQ+ +
Sbjct: 176 SHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNS 211

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 8.5e-24
Identity = 69/194 (35.57%), Postives = 106/194 (54.64%), Query Frame = 0


Query: 59  GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLR 118
           GL +S+I SITV KY+K +G +E + CSVCL+EFQE+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query: 119 THTTCPLCRAHILTD-----FPTSNTARPPNSGHLNQNEANLVVI----------EET-- 178
           +H+ CPLCRA I+T         +N      +  ++  + ++VV+           ET  
Sbjct: 193 SHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVN 252

Query: 179 ---------QMENLEGEEQ--SAVSGGGGVENRGDAV----DEQRDIGVPPIGEIVPKEG 221
                      ++ +GEE+  ++++ GGGV +  D +    D++   GV     +   EG
Sbjct: 253 EGSTPKPPEMQDSRDGEERRSASLNSGGGVVSIADILREIEDDEESAGVGTSRWVEEGEG 312

[Close]

BLAST of Cp4.1LG11g04460 vs. NCBI nr
Match: XP_023546737.1 (RING-H2 finger protein ATL54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 438 bits (1126), Expect = 1.41e-153
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK
Sbjct: 82  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 141

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 142 KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 201

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 194
           PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG
Sbjct: 202 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 261

Query: 195 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
           VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT
Sbjct: 262 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 295

[Close]

BLAST of Cp4.1LG11g04460 vs. NCBI nr
Match: XP_022962175.1 (RING-H2 finger protein ATL54-like [Cucurbita moschata])

HSP 1 Score: 419 bits (1078), Expect = 3.10e-146
Identity = 205/214 (95.79%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           +VKCQAWRSGSGNQGAE SQL+GEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK
Sbjct: 84  IVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 143

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           KGEGLIEGTVCSVCLNEFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 144 KGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 203

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 194
           PTSN ARPPNSGHLNQNEANL VIEETQMENLEGEEQSAVSGGGGVENRGDAV EQRDIG
Sbjct: 204 PTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQSAVSGGGGVENRGDAVYEQRDIG 263

Query: 195 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
           VP IGEIVPKEGVFESDDSKMEV ETMMNCSSAT
Sbjct: 264 VPQIGEIVPKEGVFESDDSKMEVTETMMNCSSAT 297

[Close]

BLAST of Cp4.1LG11g04460 vs. NCBI nr
Match: KAG6598705.1 (RING-H2 finger protein ATL54, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 418 bits (1074), Expect = 1.26e-145
Identity = 203/214 (94.86%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           +VKCQAWRSGSGNQGAE SQL+GEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK
Sbjct: 84  IVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 143

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           KGEGLIEGTVCSVCLNEFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 144 KGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 203

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 194
           PTSN ARPPNSGHLNQNEANL VI+ETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG
Sbjct: 204 PTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 263

Query: 195 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
           VP IGEI PKEGVFESDDSKMEV ET MNCSSAT
Sbjct: 264 VPQIGEIAPKEGVFESDDSKMEVTETTMNCSSAT 297

[Close]

BLAST of Cp4.1LG11g04460 vs. NCBI nr
Match: XP_022997232.1 (RING-H2 finger protein ATL54-like [Cucurbita maxima])

HSP 1 Score: 417 bits (1071), Expect = 3.03e-145
Identity = 203/214 (94.86%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           +VK QAWRSGSGNQGAE SQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK
Sbjct: 79  IVKWQAWRSGSGNQGAEASQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 138

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           KGEGLIEGTVCSVCLNEFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 139 KGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 198

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 194
            TSN  RPPNSGH+NQNEANL VIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRD+G
Sbjct: 199 ATSNFPRPPNSGHVNQNEANLAVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDVG 258

Query: 195 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
           VP IGEIVPKEGVFESDDSKMEVNETMMNCSSAT
Sbjct: 259 VPQIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 292

[Close]

BLAST of Cp4.1LG11g04460 vs. NCBI nr
Match: KAG7029647.1 (RING-H2 finger protein ATL54, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 416 bits (1070), Expect = 5.32e-145
Identity = 202/214 (94.39%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           +VKCQAWRSGSGNQGAE SQL+GEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK
Sbjct: 85  IVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 144

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           KGEGLIEGTVCSVCLNEFQEDE+LRLLPKCSHAFHIGCVDTWLR+HTTCPLCRAHILTDF
Sbjct: 145 KGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRAHILTDF 204

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 194
           PTSN ARPPNSGHLNQNEANL VI+ETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG
Sbjct: 205 PTSNAARPPNSGHLNQNEANLGVIQETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 264

Query: 195 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
           VP IGEI PKEGVFESDDSKMEV ET MNCSSAT
Sbjct: 265 VPQIGEIAPKEGVFESDDSKMEVTETTMNCSSAT 298

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy TrEMBL
Match: A0A6J1HEB6 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111462708 PE=3 SV=1)

HSP 1 Score: 419 bits (1078), Expect = 1.50e-146
Identity = 205/214 (95.79%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           +VKCQAWRSGSGNQGAE SQL+GEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK
Sbjct: 84  IVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 143

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           KGEGLIEGTVCSVCLNEFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 144 KGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 203

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 194
           PTSN ARPPNSGHLNQNEANL VIEETQMENLEGEEQSAVSGGGGVENRGDAV EQRDIG
Sbjct: 204 PTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQSAVSGGGGVENRGDAVYEQRDIG 263

Query: 195 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
           VP IGEIVPKEGVFESDDSKMEV ETMMNCSSAT
Sbjct: 264 VPQIGEIVPKEGVFESDDSKMEVTETMMNCSSAT 297

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy TrEMBL
Match: A0A6J1K4G1 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111492196 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 1.46e-145
Identity = 203/214 (94.86%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           +VK QAWRSGSGNQGAE SQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK
Sbjct: 79  IVKWQAWRSGSGNQGAEASQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 138

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           KGEGLIEGTVCSVCLNEFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 139 KGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 198

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDIG 194
            TSN  RPPNSGH+NQNEANL VIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRD+G
Sbjct: 199 ATSNFPRPPNSGHVNQNEANLAVIEETQMENLEGEEQSAVSGGGGVENRGDAVDEQRDVG 258

Query: 195 VPPIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 228
           VP IGEIVPKEGVFESDDSKMEVNETMMNCSSAT
Sbjct: 259 VPQIGEIVPKEGVFESDDSKMEVNETMMNCSSAT 292

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy TrEMBL
Match: A0A0A0LPJ4 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE=3 SV=1)

HSP 1 Score: 307 bits (787), Expect = 3.86e-102
Identity = 159/218 (72.94%), Postives = 176/218 (80.73%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           VVKC++W SGS N+GAE  Q DG +GEF+NENQVDHPIWFITT GLQQS+INSITVCKYK
Sbjct: 81  VVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYK 140

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           K EGLIEGT CSVCL+EFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 141 KSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 200

Query: 135 PTSNTARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAV--SGGGGV-------ENRGD 194
            T N+ RPPN G LNQNE NL + E+TQMEN E   + AV  + GGGV       ENRGD
Sbjct: 201 TTPNSVRPPNIGPLNQNEGNLGLNEDTQMEN-ENTNREAVRENEGGGVSISSESSENRGD 260

Query: 195 AVDEQRDIGVPPIGEIVPKEGVFESDDSKMEVNETMMN 223
           AVDEQR++      EIV KEG FESDDSK+E NE+M N
Sbjct: 261 AVDEQREV-----EEIVQKEGNFESDDSKVEGNESMRN 292

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy TrEMBL
Match: A0A5A7VDK2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004620 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 1.57e-99
Identity = 155/219 (70.78%), Postives = 172/219 (78.54%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           VVKC++W SGSGN+GAE  Q DG +GEF+NENQVDHPIWFITT GLQQS+INSITVCKYK
Sbjct: 81  VVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYK 140

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           K EGLIEGT CSVCL+EFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 141 KSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 200

Query: 135 PTSNT--ARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGV--------ENRG 194
            TSN+   RPPN G LNQNE NL + E+TQMEN     ++     GGV        ENRG
Sbjct: 201 TTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENINGEAVRENEGGVVSISSESSENRG 260

Query: 195 DAVDEQRDIGVPPIGEIVPKEGVFESDDSKMEVNETMMN 223
           D VDEQR++      EIV KEG FESDDSK+E NE+  N
Sbjct: 261 DVVDEQREV-----EEIVQKEGNFESDDSKVEGNESTRN 294

[Close]

BLAST of Cp4.1LG11g04460 vs. ExPASy TrEMBL
Match: A0A1S3BAW8 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103488086 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 1.57e-99
Identity = 155/219 (70.78%), Postives = 172/219 (78.54%), Query Frame = 0


Query: 15  VVKCQAWRSGSGNQGAETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYK 74
           VVKC++W SGSGN+GAE  Q DG +GEF+NENQVDHPIWFITT GLQQS+INSITVCKYK
Sbjct: 81  VVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDHPIWFITTAGLQQSVINSITVCKYK 140

Query: 75  KGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 134
           K EGLIEGT CSVCL+EFQEDE+LRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF
Sbjct: 141 KSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDF 200

Query: 135 PTSNT--ARPPNSGHLNQNEANLVVIEETQMENLEGEEQSAVSGGGGV--------ENRG 194
            TSN+   RPPN G LNQNE NL + E+TQMEN     ++     GGV        ENRG
Sbjct: 201 TTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENINGEAVRENEGGVVSISSESSENRG 260

Query: 195 DAVDEQRDIGVPPIGEIVPKEGVFESDDSKMEVNETMMN 223
           D VDEQR++      EIV KEG FESDDSK+E NE+  N
Sbjct: 261 DVVDEQREV-----EEIVQKEGNFESDDSKVEGNESTRN 294

[Close]

BLAST of Cp4.1LG11g04460 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-38
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 27  NQGAETSQLDGEDG------EFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLI 86
           NQG  T Q D ED       EF +  QVDHPIW I T GLQQSIINSIT+C YK+G+GLI
Sbjct: 115 NQG--TYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLI 174

Query: 87  EGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHI 131
           E T C VCLNEF+EDE LRLLPKC+HAFHI C+DTWL +HT CPLCRA I
Sbjct: 175 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGI 222

[Close]

BLAST of Cp4.1LG11g04460 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-32
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 31  ETSQLDGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLN 90
           +T+Q + ED     +    H +W I TVGL +S INSITV  +KKGEG+I+GT CSVCLN
Sbjct: 81  DTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLN 140

Query: 91  EFQEDELLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHIL 132
           EF+EDE LRLLPKCSHAFH+ C+DTWL +H  CPLCRA +L
Sbjct: 141 EFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL 181

[Close]

BLAST of Cp4.1LG11g04460 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 3.9e-32
Identity = 68/131 (51.91%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 48  VDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHA 107
           VDHPIW I T+GL  ++I+SI VC+Y K +G++EGT CSVCL+EF+E+E LRLLPKC HA
Sbjct: 180 VDHPIWHIRTIGLNPTVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHA 239

Query: 108 FHIGCVDTWLRTHTTCPLCRAHILTDFPTSNTARPPNSGHLNQNEANLVVIEET---QME 167
           FH+ C+DTWLR+HT CPLCRA I+     +NT    +S  L   E ++++ EE      E
Sbjct: 240 FHLYCIDTWLRSHTNCPLCRAPIV----EANTMIDDHSEGL--EEISVMIPEENGDDTDE 299

Query: 168 NLEGEEQSAVS 176
            +E E    VS
Sbjct: 300 EIEEERDGFVS 304

[Close]

BLAST of Cp4.1LG11g04460 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-25
Identity = 50/96 (52.08%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 59  GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLR 118
           GL +S+I SITV KYK G+G ++G+ CSVCL+EF+E+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175

Query: 119 THTTCPLCRAHIL-TDFPTSNTARPPNSGHLNQNEA 154
           +H+ CPLCRA +   + PT++  +  +    NQ+ +
Sbjct: 176 SHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNS 211

[Close]

BLAST of Cp4.1LG11g04460 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 6.0e-25
Identity = 69/194 (35.57%), Postives = 106/194 (54.64%), Query Frame = 0


Query: 59  GLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDELLRLLPKCSHAFHIGCVDTWLR 118
           GL +S+I SITV KY+K +G +E + CSVCL+EFQE+E LRLLPKC+HAFH+ C+DTWL+
Sbjct: 133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query: 119 THTTCPLCRAHILTD-----FPTSNTARPPNSGHLNQNEANLVVI----------EET-- 178
           +H+ CPLCRA I+T         +N      +  ++  + ++VV+           ET  
Sbjct: 193 SHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVN 252

Query: 179 ---------QMENLEGEEQ--SAVSGGGGVENRGDAV----DEQRDIGVPPIGEIVPKEG 221
                      ++ +GEE+  ++++ GGGV +  D +    D++   GV     +   EG
Sbjct: 253 EGSTPKPPEMQDSRDGEERRSASLNSGGGVVSIADILREIEDDEESAGVGTSRWVEEGEG 312

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g04460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFY8	1.8e-37	68.18	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]
Q9LX93	2.5e-31	61.39	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q7XLY8	7.4e-28	39.79	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9LF64	1.7e-24	52.08	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SRQ8	8.5e-24	35.57	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of Cp4.1LG11g04460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546737.1	1.41e-153	100.00	RING-H2 finger protein ATL54-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962175.1	3.10e-146	95.79	RING-H2 finger protein ATL54-like [Cucurbita moschata]	[more]
KAG6598705.1	1.26e-145	94.86	RING-H2 finger protein ATL54, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022997232.1	3.03e-145	94.86	RING-H2 finger protein ATL54-like [Cucurbita maxima]	[more]
KAG7029647.1	5.32e-145	94.39	RING-H2 finger protein ATL54, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Cp4.1LG11g04460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEB6	1.50e-146	95.79	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111462708...	[more]
A0A6J1K4G1	1.46e-145	94.86	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111492196 P...	[more]
A0A0A0LPJ4	3.86e-102	72.94	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE...	[more]
A0A5A7VDK2	1.57e-99	70.78	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S3BAW8	1.57e-99	70.78	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103488086 PE=3 ...	[more]

BLAST of Cp4.1LG11g04460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72220.1	1.2e-38	68.18	RING/U-box superfamily protein	[more]
AT5G10380.1	1.7e-32	61.39	RING/U-box superfamily protein	[more]
AT4G33565.1	3.9e-32	51.91	RING/U-box superfamily protein	[more]
AT5G17600.1	1.2e-25	52.08	RING/U-box superfamily protein	[more]
AT3G03550.1	6.0e-25	35.57	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 85..126 e-value: 8.2E-7 score: 38.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 84..127 e-value: 7.1E-13 score: 48.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 85..127 score: 12.769585
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 60..133 e-value: 8.7E-21 score: 74.9
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 11..213
None	No IPR available	PANTHER	PTHR45676:SF121	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 11..213
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 84..127 e-value: 1.84032E-18 score: 73.8753
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 78..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g04460.1	Cp4.1LG11g04460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane